Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03865 and BPUM_1818
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:23
# Commandline: needle
# -asequence dna-align/BSNT_03865___bltR.1.24716.seq
# -bsequence dna-align/BPUM_1818___bltR.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03865___bltR-BPUM_1818___bltR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03865___bltR-BPUM_1818___bltR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03865___bltR
# 2: BPUM_1818___bltR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1011
# Identity: 479/1011 (47.4%)
# Similarity: 479/1011 (47.4%)
# Gaps: 378/1011 (37.4%)
# Score: 927.0
#
#
#=======================================
BSNT_03865___ 1 ATGAGCGAAGATGT-TAAGAAGTATTTCACAACAGGGGAGTTTTCGAAGC 49
||||...|.||||| .||.||..||||..| ||.||.||.|||.|.|||.
BPUM_1818___b 1 ATGATAAATGATGTGCAAAAAACATTTTTC-ACTGGAGAATTTGCCAAGT 49
BSNT_03865___ 50 TCTGCCGTGTAAAAAAACAAACCTTATTTCATTATGATGAGATTGGTCTT 99
|.|....||||||.||..|.||.||.|||.||||.|||.|.||| |.|||
BPUM_1818___b 50 TATTTGATGTAAAGAAGGATACTTTGTTTTATTACGATAAAATT-GACTT 98
BSNT_03865___ 100 TT---------CTCG---CCGGAAATAAAAAAAGAAAATGGGTATAGATA 137
.| ||.| || |.|||||||||||..|.||
BPUM_1818___b 99 ATTTAAGCCAGCTGGTGTCC-----------ATGAAAATGGGTACCGTTA 137
BSNT_03865___ 138 TTATTCCTATCATCAATTTGAGATTTTTCAAGTCAT-CAGTCTATTTAAA 186
.|||.||..|.|.||||||||...||||..||..|| ||.||..|| .
BPUM_1818___b 138 CTATACCCTTGAGCAATTTGATCATTTTATAGCGATCCAATCCCTT---C 184
BSNT_03865___ 187 GAGCTTGGGG----TTCCATTAAAAGAAATAAAGTGTCTAATA------- 225
||||| |.| ||||..||||||||.|||| ..||||
BPUM_1818___b 185 GAGCT--GTGCAATTTCCGATAAAAGAATTAAA----ACAATATTTCACT 228
BSNT_03865___ 226 -------------AAAGGAAAAACACCAGACAAGATCCT-GCA--TGTTC 259
||||| |.||| ||| ||| ||| ||..|
BPUM_1818___b 229 GAGCCTTCTCGCGAAAGG-----CTCCA---AAG--CCTAGCAACTGAAC 268
BSNT_03865___ 260 TAAAAGAAAAGTCTA---TTGAGATTGATAAAAA----AATAAAT-GAG- 300
.||.|||||||..|| ..||||||| ||||| ||.|.|| .||
BPUM_1818___b 269 AAATAGAAAAGGTTAAACAAGAGATTG--AAAAACTTCAAGATATCCAGT 316
BSNT_03865___ 301 -----CTTAAGCAGTTGCAAACGATCTTACAAACAAAAGTGACGCTTACA 345
||||.||.|.|| |||
BPUM_1818___b 317 CTTTTCTTATGCGGGTG---------------------GTG--------- 336
BSNT_03865___ 346 GA-ACAA-GCACTTGAGACTGATTTTTCCTCAATTTCTTTTGAA------ 387
|| |||| ||| |||.||.||..| |.||||
BPUM_1818___b 337 GAGACAACGCA--------TGAATTATCAAC-------TGTGAAAATAGG 371
BSNT_03865___ 388 --------TATTTAAA--------TGAAGAAACATTCATGT--TAAGCCG 419
|.|||.|| .||||||.||.| ||| |||||
BPUM_1818___b 372 GGAGGTGCTGTTTCAAGAGCTGCCGGAAGAACCAGT--TGTACTAAGC-- 417
BSNT_03865___ 420 AAAAACATTAAACTTACCAGAACGAAAATATGTGGCAGCCATTTCAGAAC 469
.|||.|| |||.||.||| ||| |||.
BPUM_1818___b 418 ----GCATCAA----ACCCGATCGA--------------CAT----GAAT 441
BSNT_03865___ 470 TCATTCAT-GAAGTTCAGCAATAT---GAATTAGATGAAGGATATCCGAT 515
.|||.|.| || ||.||||| |.|| ||.||||.||
BPUM_1818___b 442 ACATCCGTAGA-----AGAAATATCTCGTAT----TGTAGGACAT----- 477
BSNT_03865___ 516 AGGCGGAATCTTTGCACGGGAACAAAT---CTTAGAAAAAGACTTCTACA 562
|||..|..|| |||| |.|| |||..|.||.||.||
BPUM_1818___b 478 ----------TTTCTAAAGG---AAATTGGCATA-AAAGGGGCTGCTGCA 513
BSNT_03865___ 563 ATTACAGTTACTTTTATATAAAAGTAAAAGAT------GGGGCAGAGAAC 606
|.|..|| ||.|..||.|||||.||.||.| |.|.|| |.|.|
BPUM_1818___b 514 AATGGAG---CTGTCTTAAAAAAGGAACAGTTCCTTCAGCGTCA-ATATC 559
BSNT_03865___ 607 ATAAAT--TATCA--TGTACGGCC-------------------------A 627
||.|.| .|||| |||.|.||| |
BPUM_1818___b 560 ATCAGTCAGATCAGTTGTTCTGCCGAATGGAAGCGCCGGAAGCAGTTAAA 609
BSNT_03865___ 628 AAA------GGCCTGTATGCAGTTGGA--TATGA--AATAGGCGGA-AAT 666
||| |||||.|||||.|| || ||||| || ||| .||
BPUM_1818___b 610 AAACCTGCTGGCCTTTATGCGGT--GATGTATGATCAA-----GGATCAT 652
BSNT_03865___ 667 ACTGAAGAGGCGTACCGGA--GAATC-----ATT-GAGTTCATTGAAAGA 708
| |||||| || ||||| ||| |.|.|..||..|.||
BPUM_1818___b 653 A-TGAAGA---------GATTGAATCTGCTTATTCGCGCTTGTTAGATGA 692
BSNT_03865___ 709 AATGGAATGCAAATAGGGGAAAATGCATATGAGGAATATATGCTGGAT-G 757
|||.||| |||.||| |.||| ||.||.||| |
BPUM_1818___b 693 AATTGAA---AAAGAGG---------ACATG--------ATACTAGATGG 722
BSNT_03865___ 758 AGATGGTAGTTGACGGGTATGAAAATACATATGCAAAAATC-CTCCT--- 803
|||| |||.||||.|.|| ||.|||...|.|| |||.|
BPUM_1818___b 723 AGAT-GTATTTGAAGAGT----------ATTTGCTTCATTCACTCATGTC 761
BSNT_03865___ 804 TCAAGTTAA---AGAG----------------GTGTAA------------ 822
|.|||.|.| |||| ||||||
BPUM_1818___b 762 TAAAGATGAAGCAGAGTATATAACGAAACTCAGTGTAAAAGTGAAAAAGC 811
BSNT_03865___ 822 ----------- 822
BPUM_1818___b 812 ACTTAGATTAA 822
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