Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01367 and BPUM_1817
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:58
# Commandline: needle
# -asequence dna-align/BSNT_01367___yfiC.1.24716.seq
# -bsequence dna-align/BPUM_1817___yfiC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01367___yfiC-BPUM_1817___yfiC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01367___yfiC-BPUM_1817___yfiC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01367___yfiC
# 2: BPUM_1817___yfiC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2105
# Identity: 1119/2105 (53.2%)
# Similarity: 1119/2105 (53.2%)
# Gaps: 577/2105 (27.4%)
# Score: 2424.0
#
#
#=======================================
BSNT_01367___ 1 ATGCTAAAAGACATCCGCAAGCCTTTCCAATATCCCAAACTGCCAATTGA 50
|.|.|.|||| || ||.|.
BPUM_1817___y 1 -------ATGTCTTCCG------------------------GC--ATGGG 17
BSNT_01367___ 51 CAAAAAAGAAGGAGCGAAAA----AGCGG-------GCGAAAGCAAAGGA 89
|.|.|||| |||...| ||.|| ||.|||.|||||||
BPUM_1817___y 18 CCATAAAG-----GCGGCCACCCTAGAGGGCCTGTCGCAAAACCAAAGGA 62
BSNT_01367___ 90 ----TACAAAGGGCACACTGAGACGAATCTGGTCTTACTTGGC----TGA 131
.|.||| ||||| ||| |.|| ||..||||| |||
BPUM_1817___y 63 ATTTAAGAAA----ACACT------AAT-TCGT-TTGATTGGCTATTTGA 100
BSNT_01367___ 132 A----AGAAAAGGACTGCTCGTACTTGT--------CATGCTGATGGT-- 167
| ||||||...|.|||..|.||||| || ||.|..|||
BPUM_1817___y 101 AACCGAGAAAATTTCAGCTGATCCTTGTTTTTATTGCA-GCGGTCGGTTC 149
BSNT_01367___ 168 ------------TGTCATCAGCGC---GATATTCGGG--------CTCCT 194
||||||.||..| |.|..|.||| |||.|
BPUM_1817___y 150 AACCGTTTTTAATGTCATTAGTCCAAAGCTGCTAGGGGATGCCACCTCTT 199
BSNT_01367___ 195 TGGCCCCTTTGTGA---------TC--GGAAAGGCCATTGACCATTTTAT 233
||||.|.||| || ||||.|||..|| |.||||.||
BPUM_1817___y 200 ----CCCTATTTGACAGCTTTACTCAAGGAACGGCTGTT--CAATTTGAT 243
BSNT_01367___ 234 CGTCGGGAAAACGGTCA----GCGGCTTGATTCCCGTTTTGCTTCTT-CT 278
|||| ||||.|| ||.|| ||
BPUM_1817___y 244 -------------GTCATTTCGCGGATT--------------TTATTACT 266
BSNT_01367___ 279 GCTCGCTATC----TATATCATTCAGTC----CCTGTCGCTTTGGT---- 316
||| |||| ||||| ||| |||.||.|||| |
BPUM_1817___y 267 GCT---TATCCTATTATAT------GTCGTTGCCTCTCTCTTT--TCATT 305
BSNT_01367___ 317 --TTCAAAACTATTGGATGATTACG---ATCTCGCAGGGCACGG---TTT 358
||||..|.||| .||||..|| .||||.|| ||.| .||
BPUM_1817___y 306 TGTTCAGCAATAT---GTGATGGCGGGTGTCTCCCA----ACAGACCATT 348
BSNT_01367___ 359 TCAGAA-TGA-----GAAGCGAAT----TGTTCACCCATCTGCATGAGCT 398
.|.||| ||| |||||.||| .|.||||||.| ||
BPUM_1817___y 349 GCTGAATTGAGGCAGGAAGCAAATGACAAGCTCACCCGT---------CT 389
BSNT_01367___ 399 GCCGATTCCATTTTTTGAT-AAACAGCGGCACGGCGAGCTGA-TGAGCCG 446
.||..|||.||.||||||| |||||.| .||.||.|| |..| |||||||
BPUM_1817___y 390 CCCCCTTCGATATTTTGATAAAACAAC-CCATGGGGA-CACACTGAGCCG 437
BSNT_01367___ 447 GGTGACGAATGACATCGAAAATGTCAGTTCTAC-CTTAAACACGTCAGTC 495
.||||.||||||||||||.|||.|.|.|.||.| |||.|||| |.||.||
BPUM_1817___y 438 TGTGATGAATGACATCGATAATATTAATACTTCGCTTCAACA-GGCACTC 486
BSNT_01367___ 496 ATTCAAAT-------TTTGTCAAGCGTGATCAC---CTTTGCCGGGACGA 535
|..|||.| |.|||| ||||| |.|| ||||...
BPUM_1817___y 487 ACCCAAGTGATTACATCTGTC-------ATCACGGTCATT---GGGATTG 526
BSNT_01367___ 536 TTGCGGTGATGCTGTACATGAGCCCGCTCCTTACATTGAT---------- 575
|||...|||||||.|.|||.||.|||||.||.||.|||.|
BPUM_1817___y 527 TTGTCATGATGCTATTCATTAGTCCGCTTCTGACCTTGCTCGTTTGTTTG 576
BSNT_01367___ 576 ----TA-CGCTGACCATTATTCCGGTGATGGCAGCGAGCCTGAAATGGAT 620
|| ||||.|.|.|..||.||.| |.||.|| ||
BPUM_1817___y 577 ACGCTACCGCTCAGCCTGTTTGCGAT--TCGCGGC-------------AT 611
BSNT_01367___ 621 CAC----------CAACCGAACGGGAAAGCTGTTTAAAGAACAGCAGAAA 660
.|| || |||.|..|||||||..|||||.|||
BPUM_1817___y 612 TACGTCATTTTCTCA----------AAAACATTTTAAAGCGCAGCAAAAA 651
BSNT_01367___ 661 AACCTAGG--TGATCTGAATGGGTATATTGAGGAATCTGTTTCAGGCGCA 708
.|.||.|| ||||| |||||..|||||.|.||| .|||| ||
BPUM_1817___y 652 GAGCTTGGGATGATC--AATGGACATATTAATGAA-ATGTT-------CA 691
BSNT_01367___ 709 AAGGTCATCAAA--------GCATATTCACG----TGAGAAGCA---GAT 743
.|||.||.|||| |||||| | |||.|||.| |||
BPUM_1817___y 692 CAGGGCACCAAACGGTTCGTGCATAT----GGCTATGAAAAGAAAGCGAT 737
BSNT_01367___ 744 ---TAC---TGCTGAATTTCTCGAAAAAAACG--CTGC------ACTCAA 779
||| ||.|.|||| ||||| |.|| |.|||
BPUM_1817___y 738 CGATACATTTGATCAATT---------AAACGAACAGCTATATGAATCA- 777
BSNT_01367___ 780 GACGTCGGGCTTTTGG----GCGCAGACGATTTCCGGGTTTATCCCGAAG 825
||| .| ||||||...||||||||.|
BPUM_1817___y 778 ----TCG-------AGAAAAGCGCAGTTCATTTCCGGCT----------- 805
BSNT_01367___ 826 GTCATGAACTCTTTGAATAACTT--------AAGCTTTACAATGATTGCG 867
|.||||...|.||| ||.||.| ||.|||..|.| ||.|
BPUM_1817___y 806 -TAATGATGCCATTG-ATGACGTTTATCGGGAACCTTGGCTA----TGTG 849
BSNT_01367___ 868 GCAATC---------GGCGGTTTGTTTGCGCTGAAAGGCTGGATCTCGAT 908
|||.|| ||||||.|..|||...|.||.|| |.||.|
BPUM_1817___y 850 GCAGTCAGTGTAGCTGGCGGTATTCTTGTAATAAACGG--GAATAT---- 893
BSNT_01367___ 909 CGGCTCCATCGTCGTC-----TTTGC---CGAGTATTCAAGA-------C 943
|||| ||| |.||| ||..|||.|||.| |
BPUM_1817___y 894 --------TCGT-GTCGGGGATGTGCAGGCGTTTATCCAATATACGCAGC 934
BSNT_01367___ 944 AA-----TTTACACGCCCTTTAAACGATC-----TGGCCAAC-CAGTTTA 982
|| |..|| |||.|.|..||..||| |.|||||| ..|||.|
BPUM_1817___y 935 AAATGTCTCAAC-CGCTCGTGCAAGCATCAAGCGTCGCCAACTTGGTTCA 983
BSNT_01367___ 983 ATACGATGCTGTCCGCAATTGCCGGCGCTGAACGGGTGTTTGCCGTGCTT 1032
| ||.||.|||||....||||||.|||||||||.|.|.||.
BPUM_1817___y 984 A----------TCAGCGATTGCTTCTGCTGAAAGGGTGTTTGACATCCTG 1023
BSNT_01367___ 1033 GATGAAAAAGAAGAGCGCGATGATGA-AAAGAACGCCGTGCATCAGCCCA 1081
|||||..||||||| ..|||.||| .|||| ||||.|| |
BPUM_1817___y 1024 GATGAGGAAGAAGA---AAATGCTGAGGAAGA------TGCAGCA----A 1060
BSNT_01367___ 1082 TCCAAACAGGCAGCATTGAA-----TTCAGG-GATGT------------- 1112
|..| |.||||| |||||| |||||
BPUM_1817___y 1061 TTGA---------CCTTGAATCACTTTCAGGCGATGTGAGCTTTGAACAA 1101
BSNT_01367___ 1113 -TTC-CTTCGGTTACGATAAAGGGCAGCAGACACTGAAGCATTTACAGTT 1160
||| .||.||.||.||.||||..||.|.||...|.||..|||| .||||
BPUM_1817___y 1102 GTTCAATTTGGATATGAAAAAGACCATCCGATTATTAAAAATTT-GAGTT 1150
BSNT_01367___ 1161 CACCG-TGCC--TGCGGGGCAGTCCATCGCGTTTGTCGGACCGACGGGGG 1207
.| | ||.| .|..||.||..|..|.|||.||||.||.||.||.||.|
BPUM_1817___y 1151 TA--GATGTCAAAGAAGGTCAAACGGTTGCGATTGTTGGGCCAACAGGCG 1198
BSNT_01367___ 1208 CGGGGAAGACAACCGTCACTAACCTTCTCGCCCGTTTTTACGAGCCTGAC 1257
|.||.||.||||||.|||..||.|||.|....|||||.||.||....||.
BPUM_1817___y 1199 CTGGAAAAACAACCATCATCAATCTTTTAATGCGTTTCTATGAATTAGAT 1248
BSNT_01367___ 1258 GAAGGAAAAATTTTAATCG--ACGGTACAGATATTAAAACCCTTACTAGA 1305
.|||| .|.||..|| .|||| |...|.||||| |||| ||
BPUM_1817___y 1249 CAAGG-----CTCTATCCGCATCGGT---GGCGTCAAAAC---TACT-GA 1286
BSNT_01367___ 1306 GC-AAGCC-TGAGAAAAAAC--------ATGGGGTTTGTTCTTCAGGATT 1345
.| .|||| |.||.||..|| .|.|.|.|.||||||||||||.
BPUM_1817___y 1287 TCTCAGCCGTCAGCAAGTACGCGACTTATTTGCGATGGTTCTTCAGGATA 1336
BSNT_01367___ 1346 C-TTTCTTATTTCAGGGAACGA-TCAGAGAAAACATTCGCTACGGCAGGC 1393
| |..||| |||.|.||.|||| ||| .||.||.|||..|||.|||||||
BPUM_1817___y 1337 CGTGGCTT-TTTGAAGGGACGATTCA-TGACAATATTGCCTATGGCAGGC 1384
BSNT_01367___ 1394 TTGATGCTTCTGATCAGGAAG---TCGAAGCCGCTGCAAAAACA-GCGAA 1439
...|.|..||..|..||||.| ||.||||||| .||||| ||..|
BPUM_1817___y 1385 AGAACGTCTCAAAAGAGGATGTCATCAAAGCCGC----CAAACATGCATA 1430
BSNT_01367___ 1440 TGCCCATAGTTTTATTGAAAGGCTGCCAAAAGGGTATGACACCGTGCTGA 1489
|||..||...||.||....|.|||.|||.|.||.|||||||| |
BPUM_1817___y 1431 TGCTGATGACTTCATCCGCACGCTTCCAGACGGATATGACAC-------A 1473
BSNT_01367___ 1490 CGCAAAAC----GGTTCGGGC-ATCAGT--CAGGGACAGAAGCAGTTGAT 1532
|.|..||| |.|.|.||| ||..|| ||.||.|||...|||.||.|
BPUM_1817___y 1474 CTCTTAACAGAAGATGCCGGCAATTTGTCCCAAGGTCAGCGCCAGCTGTT 1523
BSNT_01367___ 1533 TTCTATAGCGAGGGCGGTGCTTGCCGATCC--GGTTCTTCTCATTTTGGA 1580
..|.||.||..|.|||.|..|..|.||||| .|.||| |.||.||.||
BPUM_1817___y 1524 AACCATCGCCCGTGCGATTTTATCTGATCCAAAGATCT--TAATATTAGA 1571
BSNT_01367___ 1581 TGAAGCGACAAGCAACATTGATAC-CGTTACAGAAGTCAACATTCAAGAA 1629
|||||||||.||||...|.||||| || .|||||..|..||||||||.||
BPUM_1817___y 1572 TGAAGCGACGAGCAGTGTGGATACACG-GACAGAGATGCACATTCAAAAA 1620
BSNT_01367___ 1630 GCGCT---TGCCCGTTTAATGGAAGGAAGAACAAGCGTCATCATTGCCCA 1676
|||.| || ..||.|||.|.||.|||||.|||.|..|||||||.||
BPUM_1817___y 1621 GCGATGAATG---AATTGATGAACGGCAGAACGAGCTTTGTCATTGCACA 1667
BSNT_01367___ 1677 CAGGCTGAACACCATTCAAAGA-GCGGACCAGATTGTGGTGCTAAAAGAC 1725
|||.|||...||.||| ||||| ||.||||..|||.|.||..|.|||||.
BPUM_1817___y 1668 CAGACTGTCGACGATT-AAAGATGCCGACCTTATTCTAGTCATGAAAGAT 1716
BSNT_01367___ 1726 GGTGAAATGATTGAAAAAGGCAGCCATGACGAGCTGATTCAGCAAAAAGG 1775
|||...||.|||||||||||.|..||...|||.||..|..|.|||||.||
BPUM_1817___y 1717 GGTACCATCATTGAAAAAGGAACACACAGCGAACTCTTAAAACAAAATGG 1766
BSNT_01367___ 1776 ATTTTA--CAGTGACTTATATGAAAGCCAATTT---GAGAAAT--AG--- 1815
.||||| || |||||||||...||||||||| ||| ||| ||
BPUM_1817___y 1767 CTTTTATGCA--GACTTATATATGAGCCAATTTACCGAG-AATCAAGTCG 1813
BSNT_01367___ 1815 ----- 1815
BPUM_1817___y 1814 GTTAA 1818
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