Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03054 and BPUM_1813

See Amino acid alignment / Visit BSNT_03054 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:34
# Commandline: needle
#    -asequence dna-align/BSNT_03054___gltD.1.24716.seq
#    -bsequence dna-align/BPUM_1813___gltD.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03054___gltD-BPUM_1813___gltD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03054___gltD-BPUM_1813___gltD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03054___gltD
# 2: BPUM_1813___gltD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1512
# Identity:    1129/1512 (74.7%)
# Similarity:  1129/1512 (74.7%)
# Gaps:          57/1512 ( 3.8%)
# Score: 4076.5
# 
#
#=======================================

BSNT_03054___      1 ATGGGGAAACCAACTGGATTTATGGA-GATCAAACGAGAAAAACCTGCGG     49
                     |||||.|||.||||.||.|||||||| .|| |||.|||||||.||....|
BPUM_1813___g      1 ATGGGCAAAGCAACAGGTTTTATGGATTAT-AAAAGAGAAAAGCCAAATG     49

BSNT_03054___     50 AGCGGGACCCTCTCACTCGCTTAAAGGATTGGAAAGAATATTCTGCTCCT     99
                     |.||.||||||||||||||...|||.||.||||||||||||||.||||||
BPUM_1813___g     50 AACGTGACCCTCTCACTCGTCAAAATGACTGGAAAGAATATTCAGCTCCT     99

BSNT_03054___    100 TTTTCAGAAGAAGCATCGAAACGGCAAGGGGCGC--GGTGCATGGATTGC    147
                     |.|.||.|.||.|.||.|||...|||  ||||||  |.||.|||||||||
BPUM_1813___g    100 TATACAAATGACGTATTGAAGAAGCA--GGGCGCTAGATGTATGGATTGC    147

BSNT_03054___    148 GGTACACCGTTTTGCCAGATCGGTGCGGACATTAACGGATTTACATCCGG    197
                     ||.|||||||||||.||.|||||...|||.||.|..||...|...||.||
BPUM_1813___g    148 GGCACACCGTTTTGTCAAATCGGAATGGAGATCAGGGGCGGTGTGTCAGG    197

BSNT_03054___    198 CTGTCCGATTTACAACTTAATTCCTGAATGGAATGATCTTGTCTACCGGG    247
                     |||.|||||.||.||.||||||||||||||||||||.|||||.||.||.|
BPUM_1813___g    198 CTGCCCGATCTATAATTTAATTCCTGAATGGAATGACCTTGTGTATCGCG    247

BSNT_03054___    248 GCAGATGGAAGGAAGCATTGGAACGCCTGTTGAAAACAAACAACTTTCCT    297
                     |.||||||||.|||||..|.|||.|.|||...||||||||.||.||.|||
BPUM_1813___g    248 GAAGATGGAAAGAAGCGCTCGAAAGACTGCAAAAAACAAATAATTTCCCT    297

BSNT_03054___    298 GAATTCACAGGGCGGGTATGTCCCGCTCCTTGTGAAGGATCATGCACTTT    347
                     |||||.||.|||.|.||||||||.||||||||.|||||||||||.||   
BPUM_1813___g    298 GAATTTACTGGGAGAGTATGTCCAGCTCCTTGCGAAGGATCATGTAC---    344

BSNT_03054___    348 AG-CGATTTCA--GACCCGGCCGTATCAATTAAAAACATCGAGCGGACCA    394
                     || ||.|.|||  ||.||.||.||.||.||||||||.|||||.||.||.|
BPUM_1813___g    345 AGTCGCTATCAATGATCCAGCTGTTTCGATTAAAAATATCGAACGCACGA    394

BSNT_03054___    395 TTATCGATAAAGGATTTGAGAACGGCTGGATTCA-ACCTAGAATTCCAAA    443
                     |.||.||||||||.|||||.||.||||||| ||| |||..|||||||...
BPUM_1813___g    395 TCATTGATAAAGGCTTTGAAAATGGCTGGA-TCACACCGCGAATTCCTTC    443

BSNT_03054___    444 AAAACGAACAGGCAAAAAAGTTGCTATCGTCGGGTCGGGCCCAGCCGGAC    493
                     ||..||.||||||||||||.||||.||.|||||.||.||.|||||.||||
BPUM_1813___g    444 AAGCCGTACAGGCAAAAAAATTGCCATTGTCGGCTCAGGACCAGCAGGAC    493

BSNT_03054___    494 TGGCGAGTGCTGACCAGCTGAATCAAGCGGGGCATTCTGTCACTGTTTTT    543
                     |.||.|||||.||.||..|.||.|||||.||.|||.|.||.||.||.|||
BPUM_1813___g    494 TTGCAAGTGCGGATCAATTAAACCAAGCAGGTCATGCCGTTACCGTGTTT    543

BSNT_03054___    544 GAGCGCTCAGACAGAGCG----GGCGGCCTTTTAACATACGGCATTCCAA    589
                     ||.||.||.|||    ||    |||||.||..|.||||||||||||||||
BPUM_1813___g    544 GAACGATCTGAC----CGCCTTGGCGGACTGCTGACATACGGCATTCCAA    589

BSNT_03054___    590 ACATGAAGCTTG----AGAAGGGCATTGTAGAACGCCGAATTAAATTGCT    635
                     ||||||||||.|    |||||    |.||.||.||..||.|.|||.||.|
BPUM_1813___g    590 ACATGAAGCTGGACAAAGAAG----TCGTGGAGCGAAGAGTCAAACTGTT    635

BSNT_03054___    636 GACGCAAGAGGGAATTGATTTTGTCACGAACACAGAAATCGGTGTTGACA    685
                     ||..|||||.||.|||||.|||||.||.||||||||||||||.||.||..
BPUM_1813___g    636 GAGACAAGAAGGCATTGACTTTGTGACAAACACAGAAATCGGCGTAGATG    685

BSNT_03054___    686 TTACAGCTGATGAGCTAAAGGAGCAATTTGATGCTGTGATCTTATGCACA    735
                     |.||.||.|||||.||.||.||.||.||||||||.||.|||.|.||.|||
BPUM_1813___g    686 TCACTGCCGATGAACTGAAAGAACAGTTTGATGCGGTCATCCTTTGTACA    735

BSNT_03054___    736 GGCGCTCAAAAACAGCGGGACCTCTTAATTGAAGGACGCGA--CTCAAAA    783
                     ||.||.|||||.|||||.|||||.||.||||||||.||.||  || |||.
BPUM_1813___g    736 GGTGCACAAAAGCAGCGTGACCTGTTGATTGAAGGCCGTGAAGCT-AAAG    784

BSNT_03054___    784 GGAGTC-CATTACGCAATGGACTACCTCACACTTGCAACAAAAAGCTAT-    831
                     |||.|| |.||  ||.|||||.||..|.||.||.|||||||||||| || 
BPUM_1813___g    785 GGATTCACCTT--GCGATGGATTATTTAACCCTCGCAACAAAAAGC-ATG    831

BSNT_03054___    832 TTAGATTCTAATTTTAAAGACAAGCAATTCATTGATGCCAAAGGGAAAGA    881
                     .|.|||||....|||||||||||..|.||.||||||||.|||||.|||||
BPUM_1813___g    832 CTGGATTCAGGATTTAAAGACAAAAACTTTATTGATGCAAAAGGAAAAGA    881

BSNT_03054___    882 TGTCATCGTAATCGGAGGCGGAGATACAGGAGCTGACTGTGTGGCTACCG    931
                     .||.||.||.||.||.||.|||||||||||.||.||.||.||.||.||.|
BPUM_1813___g    882 CGTTATTGTCATTGGCGGAGGAGATACAGGTGCAGATTGCGTTGCAACTG    931

BSNT_03054___    932 CTCTGCGTCAAAAAGCCAAAAGCGTGCACCAATTCGGCAAACACCCGAAA    981
                     |.||.||.||||||||.|||||.||....||.|||||.||.||.|||||.
BPUM_1813___g    932 CCCTTCGCCAAAAAGCAAAAAGTGTTGTTCAGTTCGGGAAGCATCCGAAG    981

BSNT_03054___    982 CTTCC-GCCAGCCCGCACGAAT----GACAATATGTGGCCTGAACAGCCA   1026
                     ||||| |..|     ||||..|    ||.||.|||||||||||||||||.
BPUM_1813___g    982 CTTCCAGATA-----CACGTGTAGGGGATAACATGTGGCCTGAACAGCCT   1026

BSNT_03054___   1027 CACGTCTTTACGCTTGAATATGCATACGAGGAAGCAGAAGCAAAATTCGG   1076
                     .|||||||..|.||.||.|||||.||.||.|||||..||||.||||||||
BPUM_1813___g   1027 TACGTCTTCTCACTCGATTATGCTTATGAAGAAGCTCAAGCGAAATTCGG   1076

BSNT_03054___   1077 AAGAGATCCGAGAGAATACTCCATTCAAACGACAAAAATGGTCGCGGATA   1126
                     ...|||||||.|..||||.|||||||||||.||||||||.||.||.||||
BPUM_1813___g   1077 GGAAGATCCGCGTCAATATTCCATTCAAACCACAAAAATAGTGGCAGATA   1126

BSNT_03054___   1127 AAAACGGAAAGCTGAAAGAGCTTCATACCATCCAAATGGAAAAAGTGAAA   1176
                     ||||.|||||..|.||||||||||||||.||||||||||||||..|||||
BPUM_1813___g   1127 AAAATGGAAAATTAAAAGAGCTTCATACGATCCAAATGGAAAAGATGAAA   1176

BSNT_03054___   1177 AATGAGCATGGAAAATACGAGTTCCGCGAGCTGCCTGGAACGGAAAAAGT   1226
                     ||.||.|||||.||.|..||.||.|..|||.|.||.||.||.||||||||
BPUM_1813___g   1177 AACGAACATGGGAAGTTTGAATTTCATGAGATTCCAGGGACAGAAAAAGT   1226

BSNT_03054___   1227 ATGGCCTGCTCAGCTTGTCTTTATCGCTATCGGCTTTGAAGGCACAGAAC   1276
                     ||||||.||||||||.||||||||.||.||.||.|||||.||.||.||||
BPUM_1813___g   1227 ATGGCCAGCTCAGCTAGTCTTTATTGCAATTGGTTTTGAGGGAACTGAAC   1276

BSNT_03054___   1277 AGCCGCTGTTGAAACAGTTTGGTGTTGATTCTGTAAATAACAAAATCAGT   1326
                     ||||.||..|||||||.|||||.||.||  |.|.||| |||||...||.|
BPUM_1813___g   1277 AGCCACTTGTGAAACACTTTGGCGTGGA--CAGCAAA-AACAATCGCATT   1323

BSNT_03054___   1327 GCAGCA---TATGGGGATTATCAAACAAATATCGATGGTGTATTCGCCGC   1373
                     |..|||   ||||||||.|||..|||||||.|.||.||||||||.||.||
BPUM_1813___g   1324 GACGCAAAGTATGGGGAATATACAACAAATGTAGAAGGTGTATTTGCAGC   1373

BSNT_03054___   1374 AGGGGATGCAAGAAGAGGCCAAAGCTTAATCGTATGGGCGATTAATGAAG   1423
                     .||.|||||||||.|.||.||||||||.||.||.|||||.||||||||||
BPUM_1813___g   1374 GGGAGATGCAAGACGCGGGCAAAGCTTGATTGTCTGGGCAATTAATGAAG   1423

BSNT_03054___   1424 GCCGTGAAGTGGCGCGTGAAGTGGATCGATATTTGATGGGGAGTTCAGTT   1473
                     ||.|..|||||||||.|||.||.||.||.|||||.|||||||||||.|||
BPUM_1813___g   1424 GCAGACAAGTGGCGCATGAGGTAGACCGGTATTTAATGGGGAGTTCGGTT   1473

BSNT_03054___   1474 CTTCCGTAA---   1482
                     ||.||..||   
BPUM_1813___g   1474 CTGCCAAAATAG   1485


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