Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00580 and BPUM_1810

See Amino acid alignment / Visit BSNT_00580 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:23
# Commandline: needle
#    -asequence dna-align/BSNT_00580___nasE.1.24716.seq
#    -bsequence dna-align/BPUM_1810___nasE.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00580___nasE-BPUM_1810___nasE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00580___nasE-BPUM_1810___nasE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00580___nasE
# 2: BPUM_1810___nasE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 364
# Identity:     221/364 (60.7%)
# Similarity:   221/364 (60.7%)
# Gaps:          83/364 (22.8%)
# Score: 635.0
# 
#
#=======================================

BSNT_00580___      1 ATGGTAAACA----AAGACGTAACAAAAGTATGTATCGGAAAAATTG---     43
                     |||    |||    .||..||   ||||||     ||    |.||||   
BPUM_1810___n      1 ATG----ACAGTTTCAGTTGT---AAAAGT-----TC----ACATTGGCA     34

BSNT_00580___     44 ------AAGAATTGCC--TGAACAATTAGGCAAAACAGTGTATATTGAAG     85
                           .|||.||.||  ||  ||..||||.|||||||      ||||||
BPUM_1810___n     35 CCTTATCAGATTTTCCGATG--CAGCTAGGAAAAACAG------TTGAAG     76

BSNT_00580___     86 ATAAGGAGCTC--------GCGGTTTT--CAAGCTTTCAGACGGAAGCA-    124
                       .|||..|||        ||.|||||  .||.||.||| ||   |||| 
BPUM_1810___n     77 --CAGGTACTCTTGAATTAGCTGTTTTTCAAACCTCTCA-AC---AGCAA    120

BSNT_00580___    125 -TCCGCGCCATCGAAAACCGCTGTCCGCATAAGGGCGGCGTCCTGGCAGA    173
                      ||...||.||.|||||||||||.||.|||||.|||||.||.|||||.||
BPUM_1810___n    121 TTCAAAGCGATTGAAAACCGCTGCCCTCATAAAGGCGGTGTTCTGGCTGA    170

BSNT_00580___    174 AGGCATCGTCAGCGGTGAATATGTTTTCTGCCCGATGCACGACTGGAAAA    223
                     |||.||.||.|||||.||.|||||.|||||.||.|||||.||.|||||||
BPUM_1810___n    171 AGGAATGGTAAGCGGAGATTATGTGTTCTGTCCAATGCATGATTGGAAAA    220

BSNT_00580___    224 ------TTTCCTTAGAAGACGGAATCGTCCAAGAACCTGACCACGGATGT    267
                           ||||.|.||     |||| |||.||||.|||.||..|.|||||.
BPUM_1810___n    221 TCGATCTTTCTTCAG-----GGAA-CGTTCAAGCACCAGATGATGGATGC    264

BSNT_00580___    268 GTCAAAACATATGAAACGCTGATCGAAGGAGAACATG-------TTTATC    310
                     ||.||||||||||||||..||.|.||.|||.|..|.|       ||||| 
BPUM_1810___n    265 GTTAAAACATATGAAACATTGGTTGAGGGAAATGAGGTCTTTGTTTTAT-    313

BSNT_00580___    311 TCGTATATTGA---    321
                        ||..||.|   
BPUM_1810___n    314 ---TACCTTCATAA    324


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