Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01222 and BPUM_1809

See Amino acid alignment / Visit BSNT_01222 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:49
# Commandline: needle
#    -asequence dna-align/BSNT_01222___yetF.1.24716.seq
#    -bsequence dna-align/BPUM_1809___yetF.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01222___yetF-BPUM_1809___yetF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01222___yetF-BPUM_1809___yetF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01222___yetF
# 2: BPUM_1809___yetF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 793
# Identity:     464/793 (58.5%)
# Similarity:   464/793 (58.5%)
# Gaps:         155/793 (19.5%)
# Score: 1155.5
# 
#
#=======================================

BSNT_01222___      1 -------------ATGG-----GAAA--------------------TTAT     12
                                  ||.|     ||||                    ||||
BPUM_1809___y      1 ATGCTGTATGTAAATAGAGCAAGAAAGGAAGGAATCTTCGTGCCGTTTAT     50

BSNT_01222___     13 TTAAGTGTTGCGGTAGAACTGGTCTGCGG--TTTAGGCATTTTATTTATC     60
                     |  |||.||..|.|.||.||..|...|||  |||..||  |||||||.| 
BPUM_1809___y     51 T--AGTATTTTGCTTGAGCTCTTTATCGGGTTTTTCGC--TTTATTTTT-     95

BSNT_01222___     61 ATCTTA-AAGCTTCTCGGGAAA-ACCCAATTTTCTCAAATTACGCCGTTT    108
                      |.||| ||..||.|..||||| ||.||||||.|.|||||.|||||.|||
BPUM_1809___y     96 -TATTACAAAATTATTAGGAAAGACACAATTTGCACAAATCACGCCATTT    144

BSNT_01222___    109 GACTTTATCTCTGCTTTAATTTTAGGAGAATTGGTCGGAAATGCCGTTTA    158
                     ||.|||||.|||||..|.||||||||.|||.||||||||||.||..|.|.
BPUM_1809___y    145 GATTTTATTTCTGCACTCATTTTAGGCGAAATGGTCGGAAACGCTATATT    194

BSNT_01222___    159 CGATCATGAAATCAAAATCAAAGAAATTATTTTTGC---TTCGCTATTGT    205
                     .||.|..|||.|||||||..|..|.|||.|.|||||   |.||.||   |
BPUM_1809___y    195 TGACCCAGAAGTCAAAATTCAGCACATTTTATTTGCTGTTGCGGTA---T    241

BSNT_01222___    206 GGGGCGTGCTGATTTATATTATTGAAT--TTATCA---CGCAAAAAATGA    250
                     |||||.|.||.||.||.|...||||||  ||.|||   |||...||| |.
BPUM_1809___y    242 GGGGCATTCTCATCTACACAGTTGAATGGTTTTCACAGCGCTTTAAA-GG    290

BSNT_01222___    251 AATCATCGCGAAAGTTCTTGGAGGGCGAG-CCGAATATCGTC----ATCC    295
                     .||||..||    .||.||.||.|| .|| ||||...|.|||    ||| 
BPUM_1809___y    291 GATCAGGGC----CTTTTTAGAAGG-AAGACCGACACTAGTCATTGATC-    334

BSNT_01222___    296 GCAAAGGGGAGCTTCAATATAAAGTATTGAAGAAAAATAAGATGGACATT    345
                        ||||..||.||||.||.||....|||||||||||||.|.|.||..||
BPUM_1809___y    335 ---AAGGTAAGATTCACTACAATCGCTTGAAGAAAAATATGCTTGATCTT    381

BSNT_01222___    346 AACCAGCTGCAAAGCCTT--TTGAGGCAAGCGGGGAGCTTTTCGATTCAA    393
                     ||.||||||||.| |.||  ||...||.|..||..|  ||||...||.||
BPUM_1809___y    382 AATCAGCTGCAGA-CATTAATTCGTGCGAAAGGTCA--TTTTGCCTTGAA    428

BSNT_01222___    394 -GAAGTAGAATATGCGATTTTGGAAACAAACGGGATGGTCAGTGTGCTTC    442
                      |||.|.||||||||.||||||||||||.||||....||||||||.||||
BPUM_1809___y    429 TGAAATTGAATATGCCATTTTGGAAACAGACGGCTCTGTCAGTGTTCTTC    478

BSNT_01222___    443 C-AAAATCCGACTTTGACA-----AACCGACCA----ATAAGGATTTGCA    482
                     | |||||  ||..|...||     |||||  ||    ||..|.||.||.|
BPUM_1809___y    479 CGAAAAT--GAAATACGCAACAGCAACCG--CAGAAGATGTGAATGTGAA    524

BSNT_01222___    483 G-----ATTCCTTCGAAGTCTGTTTCCCTGCCGATCACTTTAATCATAGA    527
                     |     |       ||||||...|    ||||.|..||.||.||.||.||
BPUM_1809___y    525 GGGAAAA-------GAAGTCAAAT----TGCCTAGAACGTTTATTATTGA    563

BSNT_01222___    528 TGGAGAGATTGTCCGGGATAATCTGAAGGAAGCAGGTGTGGATG-AACAG    576
                     |||.||.|||.|....|||.||||..|.|||||.||..|.||.| |||| 
BPUM_1809___y    564 TGGTGAAATTTTAAAAGATGATCTACAAGAAGCTGGCTTTGACGAAACA-    612

BSNT_01222___    577 TGGCTGA---AGCAAGAATTGAAAAAGAAGAACATT----------GATA    613
                     |||.|||   |||   ||||.||||.|.||.|||||          ||  
BPUM_1809___y    613 TGGTTGAGTGAGC---AATTAAAAAGGCAGCACATTTCCTCCTATCGA--    657

BSNT_01222___    614 AGACGGAGGACGTGTTATTTGCAGAATGGCATAAAAAT-AAGCCGCTGTA    662
                             |||||..|||||...||||||..|.||||| ||| .|.|.||
BPUM_1809___y    658 --------GACGTTCTATTTTGTGAATGGATTGAAAATGAAG-GGATTTA    698

BSNT_01222___    663 TACCGTAACATACGAACAAAGCAGATC-----AACA-TGA---    696
                     |.|..|.|.|||.||  ||||    ||     |||| |.|   
BPUM_1809___y    699 TGCGATGAAATATGA--AAAG----TCTAAAAAACACTCATAA    735


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