Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01222 and BPUM_1809
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:49
# Commandline: needle
# -asequence dna-align/BSNT_01222___yetF.1.24716.seq
# -bsequence dna-align/BPUM_1809___yetF.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01222___yetF-BPUM_1809___yetF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01222___yetF-BPUM_1809___yetF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01222___yetF
# 2: BPUM_1809___yetF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 793
# Identity: 464/793 (58.5%)
# Similarity: 464/793 (58.5%)
# Gaps: 155/793 (19.5%)
# Score: 1155.5
#
#
#=======================================
BSNT_01222___ 1 -------------ATGG-----GAAA--------------------TTAT 12
||.| |||| ||||
BPUM_1809___y 1 ATGCTGTATGTAAATAGAGCAAGAAAGGAAGGAATCTTCGTGCCGTTTAT 50
BSNT_01222___ 13 TTAAGTGTTGCGGTAGAACTGGTCTGCGG--TTTAGGCATTTTATTTATC 60
| |||.||..|.|.||.||..|...||| |||..|| |||||||.|
BPUM_1809___y 51 T--AGTATTTTGCTTGAGCTCTTTATCGGGTTTTTCGC--TTTATTTTT- 95
BSNT_01222___ 61 ATCTTA-AAGCTTCTCGGGAAA-ACCCAATTTTCTCAAATTACGCCGTTT 108
|.||| ||..||.|..||||| ||.||||||.|.|||||.|||||.|||
BPUM_1809___y 96 -TATTACAAAATTATTAGGAAAGACACAATTTGCACAAATCACGCCATTT 144
BSNT_01222___ 109 GACTTTATCTCTGCTTTAATTTTAGGAGAATTGGTCGGAAATGCCGTTTA 158
||.|||||.|||||..|.||||||||.|||.||||||||||.||..|.|.
BPUM_1809___y 145 GATTTTATTTCTGCACTCATTTTAGGCGAAATGGTCGGAAACGCTATATT 194
BSNT_01222___ 159 CGATCATGAAATCAAAATCAAAGAAATTATTTTTGC---TTCGCTATTGT 205
.||.|..|||.|||||||..|..|.|||.|.||||| |.||.|| |
BPUM_1809___y 195 TGACCCAGAAGTCAAAATTCAGCACATTTTATTTGCTGTTGCGGTA---T 241
BSNT_01222___ 206 GGGGCGTGCTGATTTATATTATTGAAT--TTATCA---CGCAAAAAATGA 250
|||||.|.||.||.||.|...|||||| ||.||| |||...||| |.
BPUM_1809___y 242 GGGGCATTCTCATCTACACAGTTGAATGGTTTTCACAGCGCTTTAAA-GG 290
BSNT_01222___ 251 AATCATCGCGAAAGTTCTTGGAGGGCGAG-CCGAATATCGTC----ATCC 295
.||||..|| .||.||.||.|| .|| ||||...|.||| |||
BPUM_1809___y 291 GATCAGGGC----CTTTTTAGAAGG-AAGACCGACACTAGTCATTGATC- 334
BSNT_01222___ 296 GCAAAGGGGAGCTTCAATATAAAGTATTGAAGAAAAATAAGATGGACATT 345
||||..||.||||.||.||....|||||||||||||.|.|.||..||
BPUM_1809___y 335 ---AAGGTAAGATTCACTACAATCGCTTGAAGAAAAATATGCTTGATCTT 381
BSNT_01222___ 346 AACCAGCTGCAAAGCCTT--TTGAGGCAAGCGGGGAGCTTTTCGATTCAA 393
||.||||||||.| |.|| ||...||.|..||..| ||||...||.||
BPUM_1809___y 382 AATCAGCTGCAGA-CATTAATTCGTGCGAAAGGTCA--TTTTGCCTTGAA 428
BSNT_01222___ 394 -GAAGTAGAATATGCGATTTTGGAAACAAACGGGATGGTCAGTGTGCTTC 442
|||.|.||||||||.||||||||||||.||||....||||||||.||||
BPUM_1809___y 429 TGAAATTGAATATGCCATTTTGGAAACAGACGGCTCTGTCAGTGTTCTTC 478
BSNT_01222___ 443 C-AAAATCCGACTTTGACA-----AACCGACCA----ATAAGGATTTGCA 482
| ||||| ||..|...|| ||||| || ||..|.||.||.|
BPUM_1809___y 479 CGAAAAT--GAAATACGCAACAGCAACCG--CAGAAGATGTGAATGTGAA 524
BSNT_01222___ 483 G-----ATTCCTTCGAAGTCTGTTTCCCTGCCGATCACTTTAATCATAGA 527
| | ||||||...| ||||.|..||.||.||.||.||
BPUM_1809___y 525 GGGAAAA-------GAAGTCAAAT----TGCCTAGAACGTTTATTATTGA 563
BSNT_01222___ 528 TGGAGAGATTGTCCGGGATAATCTGAAGGAAGCAGGTGTGGATG-AACAG 576
|||.||.|||.|....|||.||||..|.|||||.||..|.||.| ||||
BPUM_1809___y 564 TGGTGAAATTTTAAAAGATGATCTACAAGAAGCTGGCTTTGACGAAACA- 612
BSNT_01222___ 577 TGGCTGA---AGCAAGAATTGAAAAAGAAGAACATT----------GATA 613
|||.||| ||| ||||.||||.|.||.||||| ||
BPUM_1809___y 613 TGGTTGAGTGAGC---AATTAAAAAGGCAGCACATTTCCTCCTATCGA-- 657
BSNT_01222___ 614 AGACGGAGGACGTGTTATTTGCAGAATGGCATAAAAAT-AAGCCGCTGTA 662
|||||..|||||...||||||..|.||||| ||| .|.|.||
BPUM_1809___y 658 --------GACGTTCTATTTTGTGAATGGATTGAAAATGAAG-GGATTTA 698
BSNT_01222___ 663 TACCGTAACATACGAACAAAGCAGATC-----AACA-TGA--- 696
|.|..|.|.|||.|| |||| || |||| |.|
BPUM_1809___y 699 TGCGATGAAATATGA--AAAG----TCTAAAAAACACTCATAA 735
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