Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03011 and BPUM_1800
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:32
# Commandline: needle
# -asequence dna-align/BSNT_03011___yngC.1.24716.seq
# -bsequence dna-align/BPUM_1800.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03011___yngC-BPUM_1800.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03011___yngC-BPUM_1800.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03011___yngC
# 2: BPUM_1800
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 620
# Identity: 424/620 (68.4%)
# Similarity: 424/620 (68.4%)
# Gaps: 40/620 ( 6.5%)
# Score: 1365.5
#
#
#=======================================
BSNT_03011___ 1 GTGGGCA-GTTTGATAAGCGAAATTTTAACATGGCTGACGAACATGGGAT 49
.||||.| .|||..||| .|||||||||||.||||||||.|.|.|.||.|
BPUM_1800 1 ATGGGAACCTTTTTTAA-TGAAATTTTAACCTGGCTGACAAGCCTTGGTT 49
BSNT_03011___ 50 ATGCGGGTATTGCGATTGGGTTAATGATTGAAATTATTCCGAGTGAGATT 99
|||..|||.|.||..|.||..|.|||||||||||.||.|||||.||.|||
BPUM_1800 50 ATGTAGGTGTAGCTCTAGGTCTGATGATTGAAATCATACCGAGCGAAATT 99
BSNT_03011___ 100 GTATTAGCTTATGGAGGCTATATGGTATCGGAAGGCACGATTGGTTTTAT 149
|||.||||||||||.||.||||||||.||...|||.||.||.||||||.|
BPUM_1800 100 GTACTAGCTTATGGCGGATATATGGTGTCAACAGGAACAATCGGTTTTGT 149
BSNT_03011___ 150 TGGCGCAATTATTGCGGGTGTTATCGGGGGCACCATTGCCCAGATCTTTA 199
|||.||..||||.||.||.||.||||||||.||..|.||.|||...||||
BPUM_1800 150 TGGAGCTGTTATCGCTGGCGTCATCGGGGGTACGCTCGCACAGTGTTTTA 199
BSNT_03011___ 200 TTTACTGGATCGGCCGCTATGGCGGCAGGCCATTTCTGGACAAA-TACGG 248
|.|||||||||||.|..||||||||.||.|| |||.|..||||| |||||
BPUM_1800 200 TATACTGGATCGGTCTTTATGGCGGAAGACC-TTTTTTAACAAAGTACGG 248
BSNT_03011___ 249 GAAGTATTTATTGATTAAAAAGCATCATATCGACA-TGTCGGAAAACTGG 297
.||.||.|||||.||..|..|.||||||||||.|| || |.||...||||
BPUM_1800 249 AAAATACTTATTCATCCATGAACATCATATCGCCACTG-CAGAGCGCTGG 297
BSNT_03011___ 298 TTTCAGAAATACGGCGCCGGAGTTGTCTTCTCGGCTCGTTTTATACCGGT 347
|||.|...|||.||..||||.||.||.||..|.||.||||||||.||.||
BPUM_1800 298 TTTGATCGATATGGAACCGGTGTGGTGTTTACAGCGCGTTTTATTCCTGT 347
BSNT_03011___ 348 TGTCAGACATGCCATATCCATTCCGGCAGGTATTGCCAGAATGCCTTTTC 397
||||.|.||||||||.||||||||.||.||||||||||.||||||||||.
BPUM_1800 348 TGTCCGCCATGCCATCTCCATTCCAGCTGGTATTGCCAAAATGCCTTTTT 397
BSNT_03011___ 398 TCAAATTTGTGGTACTGACTGTGCTT-GCTATCATTCCATGGTCTATTCT 446
|.||||||||..|..||||.| |.|| ||...|||.||.|||||.||..|
BPUM_1800 398 TGAAATTTGTTCTCTTGACAG-GATTAGCAGCCATCCCTTGGTCGATCTT 446
BSNT_03011___ 447 GTTTGTTTATTTAGGCATACAGCTAGGAAGCCAGTGGGATGATGTTGAGA 496
.|||.|.|||.|.||.||.|||||.||.|...||||||||.|..||.|.|
BPUM_1800 447 ATTTATCTATCTCGGTATGCAGCTTGGGACAAAGTGGGATCACATTCAAA 496
BSNT_03011___ 497 ATATAGCAGGCACTTATACAACACCGATTAT-GATATTGGCTGTTGTCGT 545
...|.||...|.||||||||||.||.||||| |..||| ||..|.|||.|
BPUM_1800 497 GCGTTGCTCACGCTTATACAACTCCTATTATGGCCATT-GCAATCGTCTT 545
BSNT_03011___ 546 GATAGCCCTTTATTTTGTGATTAA------------------GAAACGTA 577
|||.|..||.|||||.||.||.|| .|||||.|
BPUM_1800 546 GATCGTTCTCTATTTCGTCATAAAAAAAATTCGGACGAACCGAAAACGGA 595
BSNT_03011___ 578 CAGCCATATTTAAACGATAG 597
|| ||.|||
BPUM_1800 596 CA-----ATCTAA------- 603
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