Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04189 and BPUM_1793
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:43
# Commandline: needle
# -asequence dna-align/BSNT_04189___ysfD.1.24716.seq
# -bsequence dna-align/BPUM_1793___glcF.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04189___ysfD-BPUM_1793___glcF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04189___ysfD-BPUM_1793___glcF.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04189___ysfD
# 2: BPUM_1793___glcF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1446
# Identity: 920/1446 (63.6%)
# Similarity: 920/1446 (63.6%)
# Gaps: 213/1446 (14.7%)
# Score: 2608.0
#
#
#=======================================
BSNT_04189___ 1 ATGA------CAACAGAAAAAGAAATGAAACAGATCCAAGATAAATTTAA 44
|||| |.|.|.|||.|||.||| ||| ||| |.||||.|
BPUM_1793___g 1 ATGAATTCCTCTAAACAAACAGAGATG---CAG---CAA---ACATTTCA 41
BSNT_04189___ 45 AGAGCGTATGGATGAAGGCGAGTTATTAAATTGTATGCGCTGCGGCTTCT 94
|.|||..|||||||||...|||.|..|.|||||.||||||||||||||||
BPUM_1793___g 42 ACAGCAAATGGATGAAAAGGAGCTGCTCAATTGCATGCGCTGCGGCTTCT 91
BSNT_04189___ 95 GTCTTCCTTCCTGTCCGACCTATATCGAATCGGGATTTCATGAAACACAC 144
|.||.||||||||.||.||.|||||.|||||.||....||.|||.|.|||
BPUM_1793___g 92 GCCTCCCTTCCTGCCCTACTTATATTGAATCCGGTCAACAAGAAGCGCAC 141
BSNT_04189___ 145 TCTCCGCGCGGGCGTATCGCCTTAATGAAAGCCGTAGCGGACGGTATGAT 194
|||||.|||||.||.||.||.||||||||.||.|||...|||||..||||
BPUM_1793___g 142 TCTCCCCGCGGCCGAATTGCTTTAATGAAGGCGGTAAGAGACGGCGTGAT 191
BSNT_04189___ 195 TGAACCGGATGAAGATGTCGAACGGTCGCTGTCACTTTGCCTTGGCTGCC 244
|||.||.|||.||||.|||||||..||..||...|||||.||||||||||
BPUM_1793___g 192 TGAGCCTGATAAAGACGTCGAACATTCATTGAACCTTTGTCTTGGCTGCC 241
BSNT_04189___ 245 GCGCCTGTGAGCCTGTATGCCCGTCTGGCGTGAAATACGGTCAGCTGCTT 294
||||.|||||.||.||.|||||.||.|||||.|||||.||.|...|||||
BPUM_1793___g 242 GCGCATGTGAACCAGTCTGCCCCTCAGGCGTCAAATATGGACGTTTGCTT 291
BSNT_04189___ 295 GAGGAAGCCAGAGATATTATCCACCAAAATAAAAAACACTCGCTCGGCGC 344
|||||.||.|||||.||.||.||.||..|.||||||||.||.||
BPUM_1793___g 292 GAGGATGCAAGAGACATCATTCAGCAGCACAAAAAACAATCTCT------ 335
BSNT_04189___ 345 ACGTGTCA----TGCGAAAGGCG--GCTTTTCACGAGCTGTTTCCGCATC 388
.|.||||| ||.||.|.|.| |..|||.|.|..||.|||||....|
BPUM_1793___g 336 TCCTGTCAAATTTGTGAGACGTGTTGTATTTAAAGGACTCTTTCCTTCCC 385
BSNT_04189___ 389 AAAACCGCATGCGCTCA----GCTGTAAGCCTTAT-CGGTTTGTATCAGC 433
|||.|||.||||| .|| |||| |.|||.| ||.||| |||||..
BPUM_1793___g 386 AAAGCCGAATGCG-ACAGGCGGCTG---GACTTCTGCGATTT-TATCAAA 430
BSNT_04189___ 434 GGTCAGGACTGCAAACCGCTGTGCGTAAAACCGGTATGCT-----TCGCG 478
..||.||.||||||||.||.|..||.||..|.||.||||| | ||.
BPUM_1793___g 431 CCTCTGGTCTGCAAACAGCCGCTCGCAAGTCTGGCATGCTAAAGGT-GCT 479
BSNT_04189___ 479 TCCTGCCTGAGCATTTGCGAAC-GATGGA--AGCTGTTCTTCCTGATGTT 525
||| ||| ||||||.| |.| |||||| || |..|||||..|.||.
BPUM_1793___g 480 TCC-GCC---GCATTTAC-AGCTGATGGAGCAG--GCCCTTCCAAAGGTG 522
BSNT_04189___ 526 CC---------AAAAAGCAAAGACATGAAACATCGGCCGCGTT----TCC 562
|| |||||| ||| .||||| |
BPUM_1793___g 523 CCGCGTCAACAAAAAAG---------------TCG--TGCGTTAGAAT-- 553
BSNT_04189___ 563 TGCCGTCA-----ATTGGCCCCATGAAAAAACGGGTCGCCTTTTTTTCGG 607
||| ||||||.|.|..|.|||.||.||.||.||||||.|.|
BPUM_1793___g 554 -----TCAAAGCCATTGGCACAACAAGAAAGCGTGTTGCGTTTTTTACTG 598
BSNT_04189___ 608 GCTGCTTAATGGATACGATGTTTTTAC--CGACTAACAATGCCACATTGA 655
||||.||||||||.|| |||||||.| ..||.|||.|.||.||..|..
BPUM_1793___g 599 GCTGTTTAATGGACAC--TGTTTTTTCTAGTACAAACGAAGCGACCATCC 646
BSNT_04189___ 656 AGCTTTTACAGCTGGCAGGCTGCGACATTGTCATTCCGCCTGAACAGGCT 705
|||||||.||.|||||||||||.|||.||||..|.||.||||..|||.|.
BPUM_1793___g 647 AGCTTTTGCAACTGGCAGGCTGTGACGTTGTTGTCCCTCCTGTTCAGACG 696
BSNT_04189___ 706 TGCTGCGGGGCGCTGCATGGACACAGCGGTGAAAA-AAACACAGGGAAAG 754
||||||||.||.||.|||||.||.|||||.||||| .|||| ||.||||.
BPUM_1793___g 697 TGCTGCGGCGCACTTCATGGTCATAGCGGAGAAAAGGAACA-AGCGAAAC 745
BSNT_04189___ 755 AGCTCGCGAAACAAAATATCGCTGCTTTTGA-AGCGTTAGACGTTGATGC 803
||.|.||.|..|..|||||.|..||.||||| |.| .||||.|.||||||
BPUM_1793___g 746 AGTTAGCAAGGCGGAATATTGAAGCATTTGAGAAC-ATAGAGGCTGATGC 794
BSNT_04189___ 804 ---TGTCATTACAAACGCAGGAGGATGCGGAGCCTTTCTCACTGAATATA 850
|||||| .||.||.||||||||.||.||||||.|.|.|||.|||.
BPUM_1793___g 795 GATTGTCAT---GAATGCGGGAGGATGTGGTGCCTTTTTAAGTGATTATG 841
BSNT_04189___ 851 ATCATTTGCTGAAGGATGACCCTGAGTGGTC-GGAACGGGCTGCTGCGTT 899
||||||||.|.||||||||.||.| ||..|| ..||||.|.||..||.||
BPUM_1793___g 842 ATCATTTGTTAAAGGATGAGCCAG-GTTTTCAAAAACGAGGTGAAGCCTT 890
BSNT_04189___ 900 TGTTC----AAAAGCTGAAGGATTTTTCTTCTGTTTTGGTTGAGCTCG-A 944
.|| |||| |.|.||||.|.||.....||||.||.|||.|.| |
BPUM_1793___g 891 --CTCACAGAAAA--TCACGGATATATCAGACATTTTAGTGGAGATGGCA 936
BSNT_04189___ 945 TTTC---------CATCAAATGGATCTAGC---GCTCGAGACGCCTCAGG 982
|||| ||.| .||.|| ||..||| ||.|
BPUM_1793___g 937 TTTCACCGCCGTACACC-------GCTTGCTTTGCCAGAG------CAAG 973
BSNT_04189___ 983 TCGTTACCTACCAAGATTCATGCCACCTAAGAAATGTAATG------CAT 1026
||.|.|||||.||||||||.||.|||.|..|.||.|.|||| ||
BPUM_1793___g 974 TCATCACCTATCAAGATTCTTGTCACTTGCGGAACGGAATGGGGGTACA- 1022
BSNT_04189___ 1027 ACGTCGCTTGCGCCCCGCCAGCTTCT--TAAAAGC-ATCAAAGGGGCGGA 1073
||..|||||..| |.|.|| |.||.|| ||..||||||....
BPUM_1793___g 1023 -----GCAAGCGCCAAG---GGTGCTGATGAAGGCGATTCAAGGGGTATC 1064
BSNT_04189___ 1074 ATTCAAAGAAATGGAGAAAGCAGACAGCTGCTGCGGATCAGCGGGAATTT 1123
|||.|||||||||.||.|.||.|||.||||||||||||||||.||.||||
BPUM_1793___g 1065 ATTTAAAGAAATGAAGGATGCCGACCGCTGCTGCGGATCAGCTGGCATTT 1114
BSNT_04189___ 1124 ACAACATCGTCGAAGCTG--AA--ATGTCTATGAGAATACTGGA-CAGTA 1168
|.||.||..| |||| || |||||.|||..|||..|.|| || ||
BPUM_1793___g 1115 ATAATATTTT----GCTGCCAACGATGTCAATGCAAATTTTAGATCA-TA 1159
BSNT_04189___ 1169 AAATG------GCTGCCGTCAAAGCAACCGAAGCGATCCTCATTGTAACA 1212
||||| ||| .|||||| ||.|.|..||| .|| |||||.||.
BPUM_1793___g 1160 AAATGATAGAAGCT--AGTCAAA-CAGCTGCGGCG--GCT-ATTGTCACG 1203
BSNT_04189___ 1213 GCAAATCCCGGCTGCCTGCTGCAGAT-GAAGCTCGGCATTGAACGCGAAG 1261
.|.|||||.||.||||.||||||.|| |.||| .||.||..||||...||
BPUM_1793___g 1204 TCCAATCCAGGTTGCCAGCTGCAAATGGCAGC-AGGTATCAAACGGTCAG 1252
BSNT_04189___ 1262 GACTAAGCG-GTAAAGTCAGAGCCGTTCACCTGGCTGATTTGCTATTGGA 1310
||| ||.|| .|||..|..|.|||||.||.||.|..|||||..||||
BPUM_1793___g 1253 GAC-AATCGCCTAACATGCGGGCCGTGCATCTCGTCGATTTTTTATT--- 1298
BSNT_04189___ 1311 AGCAGCCGGGCAC------AAA-------CCA--TCATGA------ 1335
||.|||||..||| ||| ||| ||||.|
BPUM_1793___g 1299 AGAAGCCGTTCACTATGGGAAAGAAGCGTCCAGCTCATCAAGCTGA 1344
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