Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04187 and BPUM_1791
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:43
# Commandline: needle
# -asequence dna-align/BSNT_04187___ysfB.1.24716.seq
# -bsequence dna-align/BPUM_1791.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04187___ysfB-BPUM_1791.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04187___ysfB-BPUM_1791.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04187___ysfB
# 2: BPUM_1791
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1347
# Identity: 663/1347 (49.2%)
# Similarity: 663/1347 (49.2%)
# Gaps: 462/1347 (34.3%)
# Score: 1410.5
#
#
#=======================================
BSNT_04187___ 1 ATGTTTTTACAGCCGTTATTAGCGAAAAAAATTATTGCTGAAGTTAAAAA 50
||| || |.|.||..||||||||.|.|..||.||.|||||
BPUM_1791 1 ATG-----AC-------ACTGGCAGAAAAAATTGTAGACGAGGTCAAAAA 38
BSNT_04187___ 51 AATG--TAC-GAACGTGAAGTCATTATTGTAAACACGGACGGTCTTATTA 97
..|| .|| || .|||.||||.||.|.|.|.||..||||....||.|
BPUM_1791 39 GGTGCTGACTGA---GGAAATCATCATAGCACAAACAAACGGCACCATCA 85
BSNT_04187___ 98 TGGCAGGCACAAAC-GAT---GAGCGTGTCGGACAATTTCATG-AGGGAG 142
|.|| ||| ||| ||| |.|||..|.||.|||||||||| ||||
BPUM_1791 86 TAGC-GGC---AACAGATCCAGCGCGCATTGGTCAATTTCATGAAGGG-- 129
BSNT_04187___ 143 CGCTTATCTGCGCA-------AA--AGAAAGACGCAGCGTGATTATTACA 183
||.|||.|| .|| || |.|||.||| .||..|.|||
BPUM_1791 130 -GCATATTTG-ACATCTTTTGAAGGACAAAAACG------AATCCTCACA 171
BSNT_04187___ 184 AAAGAAGATGA------AACAAGGTTAAAAGGAGTGAAAGCAGGCATAAA 227
||.||.||||| || |.|||||.||.|||||.||.||.||
BPUM_1791 172 AAGGATGATGAGCAGCGAA------TGAAAGGGGTCAAAGCTGGTATCAA 215
BSNT_04187___ 228 CCTCCCTGTATTTTTTGACCATGATGTGATTGCCGTCTTCGGGCTGACAG 277
.||.|||.|.|.||||.|.||.||.||.||||..||..|.|||.||||||
BPUM_1791 216 TCTGCCTATTTATTTTAAGCAAGAGGTCATTGGTGTGATTGGGATGACAG 265
BSNT_04187___ 278 GTGAGCCTGCAGAGATTCA------GCCATTCGGAGAACTGCTTCGAAAA 321
|..|.||| ||.|| .|||||.||.|||.|..|.||||||
BPUM_1791 266 GAAATCCT------ATCCATGTCTCTCCATTTGGCGAAATATTACGAAAA 309
BSNT_04187___ 322 ATGACAGAACTGTTCATTAAGGAATCGCGGCA----------CTTAGA-- 359
|||||.|||.||.|||||.|.||| || ||| ||
BPUM_1791 310 ATGACTGAATTGCTCATTCAAGAA------CATGAATTTTTTCTT-GAAA 352
BSNT_04187___ 360 -GCAATCCCAGTGGCGTGAGAGAATGCTGGAGTCCTTTATGATCGATTGG 408
|.||.||.| |||..|...|||.||..|.||..||.||||||||
BPUM_1791 353 CGGAAACCGA------TGAACGGCAGCTTGAAGCGTTCGTGTTCGATTGG 396
BSNT_04187___ 409 CTGCAATT-------AAAG-----GAGTGGTCTCCCAGTTTTCTTGAGAA 446
||.||.|| |.|| || ||||.| |||.||
BPUM_1791 397 CTTCACTTGCCAGAGACAGCCATCGA----TCTCAC--------TGAAAA 434
BSNT_04187___ 447 AGC---------TCAGCTT---------------CTTGGTGTTGACCTTT 472
||| .|||||| |.||..||.|.||||
BPUM_1791 435 AGCAGCGCGGCTACAGCTTGATGTTAATATGCAGCGTGTAGTCGTCCTT- 483
BSNT_04187___ 473 CTTCCCGGCGCCAAATGATTCTTATTCAGGGGTATGAGTGGTCACCTCAT 522
|.|||||.|.|| .||||.|.|| |.||
BPUM_1791 484 -------------ATTGATTGTCAT-------GATGAATCGT----TTAT 509
BSNT_04187___ 523 G-----------ATAT-------TGAA-CAAATG-------GCACGCAGC 546
| |||| |||| .||||| .|||.||.|
BPUM_1791 510 GAAGCAGGATCAATATAAAAAAGTGAAGGAAATGCTGCATCTCACTCATC 559
BSNT_04187___ 547 TGGAAATCCTCGTACCCTGCGG-----------ATTTGTTCATCAGGTG- 584
.||||||..||||.|.|||.|| .||||.|||| |.||
BPUM_1791 560 AGGAAATGATCGTCCGCTGGGGGCATGCCCGCTTTTTGCTCAT--GCTGC 607
BSNT_04187___ 585 -------GGGAAATGAACGGATTTTGATTAATCATGAAGTGCCGCAGCAT 627
.|.||||||.|| ||||...| |||.||||
BPUM_1791 608 AAACCTCAGCAAATGATCG-----TGATACTT-------TGCAGCAG--- 642
BSNT_04187___ 628 GAACAAAGGGATCGGCTTTTACGGAAAATCC--------TTCACATTTGT 669
||.|||||.| |.|||| .|||| ||.
BPUM_1791 643 ------------CGTCTTTTTC---ATATCCATGCTGCGCTCAC---TGC 674
BSNT_04187___ 670 TCGTTTGCCAATACCG-CAAGCAGCCAA-----TATACAGCAGCTGGCGC 713
.|||| ||| || ||| || .||| ||.||
BPUM_1791 675 ACGTT--CCA----CGTCAA------AAGTTTTGATA--------GGTGC 704
BSNT_04187___ 714 CGGAAGGGCTGTCGCAAGCTCCAGCCTGACAGAT----------TCATAC 753
.|||| ||.||.||||..||||.|| ||||..
BPUM_1791 705 GGGAA----------AACCTGCAGCTGGACAAATGATGAAGCAGTCATTT 744
BSNT_04187___ 754 GAGCAAGCGGAAAAAGCGCTGGCTGTCAGCCTT----AA--GCGAA---- 793
.|.||||| ||.||...||| || |||||
BPUM_1791 745 CATCAAGC--------------CTTTCGTGCTTTGAAAATGGCGAATGCG 780
BSNT_04187___ 794 -AAACGCCCA---TATTTGAAGAGGATCTGAAGCTTGATATGTGTCT-GA 838
|.||.||.| |||||||.||.|||.|.|..|||||..|.|.|.| ||
BPUM_1791 781 GATACACCGATTGTATTTGATGAAGATTTAACACTTGAGCTTTTTATAGA 830
BSNT_04187___ 839 CGGAGATCAGCCCGGGAACCCGAAACGAA--TTTCC----GCAAAGAGTA 882
.|.|| |.||.|.||.||| .||.||| .|||| .|.||.| |
BPUM_1791 831 AGAAG-TGAGTCAGGAAAC---TAAAGAAGTGTTCCTTGATCGAACA--A 874
BSNT_04187___ 883 TTAGGAGAGG-----------CGCTA----GAGCATCAGGAACTTA-TGA 916
|| | |.||| |||| || |.|
BPUM_1791 875 TT-------GTCCCACTTCTCCCCTACCCTGAGC----------TAGTAA 907
BSNT_04187___ 917 ATACGTTAC--GGACTTTCTTTCATCAC----GATTTGTCTTTGAAACAA 960
|.||.||.| |.|| ||||.|| ||||..||.||||||.|.
BPUM_1791 908 AAACATTGCGTGTAC------TCATGACGTCGGATTGCTCATTGAAATAT 951
BSNT_04187___ 961 ACCGCAGAAGATATGCATATTCATATCAATACATTGCGTTATCGTCTGGC 1010
|||||.||||..|||||..|.||||||||||||.|||.||| |.|||
BPUM_1791 952 ACCGCGGAAGCGATGCACGTACATATCAATACACTGCATTA----CAGGC 997
BSNT_04187___ 1011 TAAGGCTGAAC-------AGCTGACGGGTTTACG--TTTTGA-CCGTACC 1050
||| ||| ||.| ||.||| ..|||| ||..|.|
BPUM_1791 998 TAA-----AACGTATCCAAGAT------TTAACGACACTTGATCCAAAAC 1036
BSNT_04187___ 1051 GAGGACATCGTCACGATGTACGTTGCCCTCTATTTT-------------T 1087
| ||| .||.|||| ||.|||.||.|..||| |
BPUM_1791 1037 G----CAT--GCAAGATG--CGATGCTCTTTTATTTAGCCTTGATGCTAT 1078
BSNT_04187___ 1088 TAGATCAAGATACAA--AATAG------------------------- 1107
|||||||..||.||| |||.|
BPUM_1791 1079 TAGATCATCATCCAAATAATCGGAGCAAGCAGCCTGATATTTTGTAG 1125
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