Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03024 and BPUM_1787
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:33
# Commandline: needle
# -asequence dna-align/BSNT_03024___yngK.1.24716.seq
# -bsequence dna-align/BPUM_1787.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03024___yngK-BPUM_1787.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03024___yngK-BPUM_1787.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03024___yngK
# 2: BPUM_1787
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1635
# Identity: 1012/1635 (61.9%)
# Similarity: 1012/1635 (61.9%)
# Gaps: 318/1635 (19.4%)
# Score: 3229.5
#
#
#=======================================
BSNT_03024___ 1 ATGAAGGTTTGCCAAAAGTCGATTGTCCGTTTCCTTGTCAGCTTGATCAT 50
BPUM_1787 0 -------------------------------------------------- 0
BSNT_03024___ 51 CGGAACGTTTGTCATTTCCGTTCCGTTTATGGCCAATGCGCAGTCTGACA 100
||||||
BPUM_1787 1 -----------------------------------ATGCGC--------- 6
BSNT_03024___ 101 GGGAGCTGAGAGCCGTATGGATTGCTTCCGTATTA-AATATTGATTGGCC 149
||.||||||||.||.||.|| ||| ||..|.||||||||
BPUM_1787 7 -----------GCGGTATGGATCGCATCGGT-TTATAACTTAGATTGGCC 44
BSNT_03024___ 150 GTCGAAAAAAGGGTTATCTGTGAAAGAGCAAAAACAGGAGTATATCAAAC 199
.||.||.|||||..|..||||.||||||||.|||.|.||||||||..|..
BPUM_1787 45 TTCAAAGAAAGGACTGCCTGTCAAAGAGCAGAAAGAAGAGTATATTCATT 94
BSNT_03024___ 200 TGCTGGACGATGTGCAAAAAATGGGA-----ATGAATGCCGTTATCGTTC 244
||.|.||.|| |..|||| |.|| ||||||||.||.|||.|.|
BPUM_1787 95 TGTTAGATGA-GATCAAA----GCGATGAATATGAATGCTGTGATCATGC 139
BSNT_03024___ 245 AGATTAAACCGACGGCTGATGCCTTTTATCCGTCAGCTTACGGGCCTTGG 294
|.|||||.|||||.||.||||||||||||||.||.|..||.|||||.|||
BPUM_1787 140 AAATTAAGCCGACAGCAGATGCCTTTTATCCTTCTGAATATGGGCCGTGG 189
BSNT_03024___ 295 TCGGAATACTTAACCGGTGTCCAAGGGAAGGACCCGGGCTATGATCCTCT 344
||.|||||.||.|||||....||||||||.|||||.||.||||||||.||
BPUM_1787 190 TCCGAATATTTGACCGGCACGCAAGGGAAAGACCCCGGGTATGATCCGCT 239
BSNT_03024___ 345 TGCATTT-ATGATTGAAGAAACCCATAAACGAAATTTGGAATTTCATGCG 393
|| |||| ||||||||||||.|.||||||||...|.|.||||||||.||.
BPUM_1787 240 TG-ATTTCATGATTGAAGAAGCTCATAAACGCGGTCTCGAATTTCACGCT 288
BSNT_03024___ 394 TGGTTTAACCCTTACCGTATTACAATGAATCATACAGATCTTAATAAATT 443
|||||||||||.||.||.||.|||||||||||||||||.||.|.....||
BPUM_1787 289 TGGTTTAACCCGTATCGCATCACAATGAATCATACAGACCTGAGCCGTTT 338
BSNT_03024___ 444 GTCTGAGAG----TCACCCGGCAAGAAAACATCCAGATTGGGTTGCC--- 486
.|| || |||||||||||.|||||||||.|||||| .||
BPUM_1787 339 ATC----AGCCGATCACCCGGCAAAAAAACATCCTGATTGG---ACCATA 381
BSNT_03024___ 487 GCCTATGGAAACCAGCTGTATTATCATCCAGGCATTCCAGAAACGAGAGA 536
||.||.|||||.|||||.|||||..||||.||.|||||..||.|...|||
BPUM_1787 382 GCGTACGGAAATCAGCTTTATTACAATCCTGGTATTCCTAAAGCACAAGA 431
BSNT_03024___ 537 TTTTATCGTCAAAGGCATTGAAGAAGTCGTAAAACATTATGATATCGATG 586
.|||||.|||...||.||.|.|||||||||.|||.|.||.|||.|.||||
BPUM_1787 432 ATTTATTGTCGGCGGTATAGCAGAAGTCGTGAAAAACTACGATGTTGATG 481
BSNT_03024___ 587 CTGTTCATATGGATGATTATTTTTACCCTTATAAAATAGCAGGACAGGAA 636
|.||.||||||||||||||||||||.||..||||||||||.||...|...
BPUM_1787 482 CAGTGCATATGGATGATTATTTTTATCCGAATAAAATAGCCGGTGTGCCG 531
BSNT_03024___ 637 TTTCCTGATCAAGCACAGTATGAACAATACGGAAAAGGCGCTTTTTCTAA 686
||.||.||||||..|..|||||||..|||.||||||...||.||..|..|
BPUM_1787 532 TTCCCAGATCAAAAAACGTATGAAACATATGGAAAAAAGGCATTCACACA 581
BSNT_03024___ 687 TATCGATGACTGGCGGCGGGACAATGTGAACCAGCTTGTCAAACAAATCA 736
|||.||.||.|||||..|.||.|||||||||||..|.|||||.|||||||
BPUM_1787 582 TATAGAAGATTGGCGAAGAGATAATGTGAACCAATTGGTCAAGCAAATCA 631
BSNT_03024___ 737 ACCAAAC--------AATTAAAGCTGAAAAACCGTATGTCAAATTCGGCA 778
||.|.|| ||.||||| ||||||||.|||||.||||
BPUM_1787 632 ACGACACCGTGAAGAAAGTAAAG--------CCGTATGTGAAATTTGGCA 673
BSNT_03024___ 779 TCAGTCCCTTTGGAGTATGGAGAAACGCCGCA--------GATGACCCGA 820
|.||.||.|||||.||.||| |||| ||||||||||
BPUM_1787 674 TTAGCCCATTTGGCGTCTGG--------CGCAATATAAAGGATGACCCGA 715
BSNT_03024___ 821 CCGGATCGAATACAAAAGCAGGCGTCAGAAATTATGATGATCTATATGCA 870
|.||.||.|||||.|.||||||..|.|..|||||.||||||.|.|||||.
BPUM_1787 716 CTGGTTCAAATACGACAGCAGGGATGACCAATTACGATGATTTGTATGCT 765
BSNT_03024___ 871 GACACAAGACATTGGATCCA--AGAAGGCGACATCGATTATATTGCTCCG 918
||.||||||.|.|||||.|| ||.| |||.|||||||||.|..|.|||
BPUM_1787 766 GATACAAGAGAGTGGATTCAGCAGCA--CGATATCGATTATGTCACCCCG 813
BSNT_03024___ 919 CAAATTTATTGGAGTATCGGCTTTAACGCAGCGGCTTACGACGTGCTGGC 968
|||||.||.|||||.|||||.|||.|.|||||.||.||.||||||||..|
BPUM_1787 814 CAAATCTACTGGAGCATCGGTTTTCAGGCAGCCGCCTATGACGTGCTCAC 863
BSNT_03024___ 969 TGATTGGTGGAGCAATGAAGTCAA---AAATAGGCCTGTTCACTTATATA 1015
..|.||||||...||||||||.|| |.| |||||||||..|.||.|
BPUM_1787 864 GAAATGGTGGTCAAATGAAGTGAAGGGAGA---GCCTGTTCATCTGTACA 910
BSNT_03024___ 1016 TTGGCCAGGCAGCATATAAAATCAATAACAATTTTGATCCGCCTTGGTCC 1065
||||.|||||..|.||||||||||||.|.||...||||||..|||||||.
BPUM_1787 911 TTGGTCAGGCGACCTATAAAATCAATCAAAACAGTGATCCTGCTTGGTCT 960
BSNT_03024___ 1066 GACCCTGAGGAATATGTGCGGCAAATCACTTTGAACCGCCAG----CTTG 1111
||.|||||.|||||..|.|||||.|||....|||||.|.||| ||
BPUM_1787 961 GATCCTGAAGAATACTTTCGGCAGATCCAGCTGAACAGGCAGTCACCT-- 1008
BSNT_03024___ 1112 AACTGGTGAAAGGAAGCATGCATTTCAGCCTCAAGGACCTCAA------- 1154
||.||..|.|||||||||||.||.|||||.||.||..||||
BPUM_1787 1009 --CTCGTTCAGGGAAGCATGCACTTTAGCCTAAAAGATATCAATCGCAAC 1056
BSNT_03024___ 1155 -----------CAAAAATCCGCTTGGCATCAAAGACAGGCTTATCGCCGA 1193
|||||| |||.||| ||..|||| ||||
BPUM_1787 1057 CCTTTGAATGTCAAAAA-CCGATTG--ATAGAAGA---------CGCC-- 1092
BSNT_03024___ 1194 TCTTTACAGCAAGCCGGCACTGGTTCCGCAAATGCCTTGGCT-----TGA 1238
|||.|.||||||||.||..||||..||||||||||||| |||
BPUM_1787 1093 ----TACCGGAAGCCGGCTCTCATTCCAGAAATGCCTTGGCTTCATCTGA 1138
BSNT_03024___ 1239 CAATACCGCCCCAAAAAAACCGAAGC----------TTACGAAAGTCACC 1278
.| ||.||||||||||| ||.| |||..||| ||.
BPUM_1787 1139 AA-----GCGCCAAAAAAACC-AATCATTCAATCTATTAAAAAA---ACA 1179
BSNT_03024___ 1279 GAAGACAAAAACGGCAATCTTCTGCAGATTAAAGATCACCCATCAAATCA 1328
|.|||| ...||||| |.|.|||||.|||.||.|.|| .|..||
BPUM_1787 1180 GCAGAC-GGTACGGC-----TTTACAGATCAAAAATGATCC--GAGGTC- 1220
BSNT_03024___ 1329 AAAAACGAAAGAAACAGCCTATTATGCGATATACAGA--GCCGAAGGGAA 1376
.|.|| ||.|||||||||||.|.||..|| |.||| .|
BPUM_1787 1221 --TACCG-------CATCCTATTATGCGGTCTATCGATTGACGA----CA 1257
BSNT_03024___ 1377 AAAGCAGAACA----CATTGCTGGCAAC-----GCAAAGAAA-------- 1409
|||| ||||| .||||||...||| ..|||||||
BPUM_1787 1258 AAAG--GAACATACGAATTGCTTCAAACTGTTAAAAAAGAAACCGGTACG 1305
BSNT_03024___ 1410 --AACACATGAGCAGCAAA---CCTTCTTAGATAACACGGCAGATCCTAA 1454
||||..|| .|||| |.||| ||.|.|| ||| ||
BPUM_1787 1306 CTAACATCTG----TCAAAGATCTTTC--AGTTCAC----CAG-----AA 1340
BSNT_03024___ 1455 CAAGAAATATACGTATTATGTCAC----TTCAGCAGACCGGCTTCATAAC 1500
.||||...||||.||..|.||.|| .||| |.||.||||||.||
BPUM_1787 1341 TAAGAGCGATACTTACAAAGTAACGGCTCTCA----ATCGTCTTCATCAC 1386
BSNT_03024___ 1501 GAAAGCAAGGCTTC--CAAACGAACAACAAAATAA 1533
|||||||||.|||| |||| ||.|...|.||||
BPUM_1787 1387 GAAAGCAAGCCTTCTACAAA--AAGAGTGAGATAA 1419
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