Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03016 and BPUM_1782
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:32
# Commandline: needle
# -asequence dna-align/BSNT_03016___yngG.1.24716.seq
# -bsequence dna-align/BPUM_1782___yngG.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03016___yngG-BPUM_1782___yngG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03016___yngG-BPUM_1782___yngG.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03016___yngG
# 2: BPUM_1782___yngG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 994
# Identity: 602/994 (60.6%)
# Similarity: 602/994 (60.6%)
# Gaps: 179/994 (18.0%)
# Score: 1576.0
#
#
#=======================================
BSNT_03016___ 1 ATGTCATATCCTAAAAAAGTGAA--AATCAAAGAAGTCGGCCCGCGTGAC 48
|||.|||..|| |||..|||.| .||.|..||.|||||||||||.|||
BPUM_1782___y 1 ATGGCATTACC--AAAGCGTGTACTTATTAGGGAGGTCGGCCCGCGGGAC 48
BSNT_03016___ 49 GGCTTACAAAACGAGCCCGTATGGATCGCAACAGAG-GATAAAATAACCT 97
||.||.|||||.||..||...|||.|.|..||| || ||.|||..||..|
BPUM_1782___y 49 GGTTTGCAAAATGAATCCACTTGGCTAGACACA-AGCGAGAAACAAAGGT 97
BSNT_03016___ 98 GGA-TCAACCAGCTTTCCCGGACAG------GGCTTTCGTATATTGAAAT 140
||| |.|||.| |..|||| |||||.|.|||||||||.|
BPUM_1782___y 98 GGATTGAACTA-------CTCACAGCAGCCCGGCTTCCTTATATTGAAGT 140
BSNT_03016___ 141 CACATCCTTCGTTCACCCGAAATGGATTCCGGCGCTTCGAGATGCTATCG 190
|||.||.||.|||||.||.||||||.|.||.||..|...|||.||.|..|
BPUM_1782___y 141 CACCTCATTTGTTCATCCTAAATGGGTCCCAGCTTTAAAAGACGCCAAAG 190
BSNT_03016___ 191 ACGTAGCAAAAGGCATCGACCGTTTAAAAGGGG---TAACGTACGCGGCA 237
|..||||..||..|.|..|| ..||||||.| |.||.||.||.|||
BPUM_1782___y 191 AACTAGCCCAATCCTTACAC---AAAAAAGGTGACATCACCTATGCTGCA 237
BSNT_03016___ 238 CTTGTCCCGAATCAAAGAGG-------------ATTGGAG--AATGCGCT 272
|||.|.||.||..|||.||| .|||.|| ||| ||
BPUM_1782___y 238 CTTATACCTAACGAAAAAGGGTTAGCTCACTTTTTTGAAGCAAAT---CT 284
BSNT_03016___ 273 TGAAGGAGGCATTAACGAGGCT-TGCGTTTTTATGTCCGCCAGCGAGACG 321
|||...|||| ||| || |||||.||..|.||.||.|||
BPUM_1782___y 285 TGATACAGGC---------GCTATG----TTTATCTCTTCGAGTGAAACG 321
BSNT_03016___ 322 CACAACAGAAAAAACATCAATAAATCCACTTC--TGAATCCCTTCATATA 369
||.||||.|||.|||||.|||.|||||| || .|||.|.||||.|.|.
BPUM_1782___y 322 CATAACAAAAAGAACATGAATCAATCCA--TCCAAGAAACACTTCCTGTC 369
BSNT_03016___ 370 CTCAAACAAGTAAACAACGAC-GCACA---AAAAGC------AAACCTCA 409
.||||||| ||.||| ||..| |||||| ||| |
BPUM_1782___y 370 ATCAAACA-------AATGACAGCTGATTTAAAAGCAGCAGGAAA----A 408
BSNT_03016___ 410 CA-ACAAGAGCCTACCTCTCGACTGTTTTCGGCTGTCCGTACGAAAAAGA 458
|| |||.|.||.||..|.||.||.||.||.|||||.||.||.|||.|..|
BPUM_1782___y 409 CACACACGCGCATATATTTCCACCGTGTTTGGCTGCCCTTATGAACATCA 458
BSNT_03016___ 459 TGTCCCCATTGAACAAGTCATTCGCCTTTCAGAA--GCT-CTATTTGAAT 505
.||.||.||.||.|||||..|.||..|..|.||| ||| ||.|.| |
BPUM_1782___y 459 AGTGCCGATGGATCAAGTGTTGCGGTTAACGGAAATGCTGCTTTCT---T 505
BSNT_03016___ 506 TTGGGATTTCTGAACTTTCGCTTGGAGATACGATTGGAGCGGCTAATCCC 555
.|||.|||..||||.|.||.||.||.||.||.||| |||.||.|||
BPUM_1782___y 506 ATGGCATTGATGAAATATCACTCGGTGACACCATT-----GGCGAAGCCC 550
BSNT_03016___ 556 GCC-----CAAGTGGAA------------ACTGTACTTGAAGCTCTTTTG 588
.|| |||||.||| |.|.|||||||
BPUM_1782___y 551 ACCCCCTTCAAGTAGAAAGGCGCTTAGACATTTTACTTGA---------- 590
BSNT_03016___ 589 GCACGATTCCCGGCTAATCAAATTGC-CTTGCATTTTCATGATACGAGAG 637
|||.||.||.|||.||.||||.|| ||| ||||||||.|||||||.||
BPUM_1782___y 591 --ACGTTTTCCAGCTGATAAAATCGCTCTT-CATTTTCACGATACGAAAG 637
BSNT_03016___ 638 GAACCGCTCTGGCCAACATGGTCACAGCACTCCAAATG--GGCATCACGG 685
|.|..|..||.|||||.||....||||||.| |||.| ||.||.||..
BPUM_1782___y 638 GGATGGGGCTTGCCAATATTTATACAGCATT--AAAAGCCGGAATTACCA 685
BSNT_03016___ 686 TGTTTGACGGCTC-GGCAGGCGGGCTTGGGGGATGCCCATATGCGCCAGG 734
|.|||||||.||| .|| ||.|||||.||.||.||.|||||||||||.||
BPUM_1782___y 686 TATTTGACGCCTCTAGC-GGTGGGCTAGGTGGCTGTCCATATGCGCCTGG 734
BSNT_03016___ 735 TTC-ATCAGGAAACGCCGCAACTGAGGATATCGTGTACATGCTTGAACA- 782
||| |.| |||||.|.||||||.||.|||.|||||.|.||||||.||.|
BPUM_1782___y 735 TTCTAGC-GGAAATGTCGCAACAGAAGATGTCGTGCATATGCTTCAAAAA 783
BSNT_03016___ 783 -----GATGGATATCAA-AACAAATGTAAAGC-TAGA-AAAACTGCTATC 824
.||.||||.||| |.|||.|.|..||| |.|| ||||
BPUM_1782___y 784 TTAGGAATCGATACCAATATCAATTTTCCAGCATTGATAAAA-------- 825
BSNT_03016___ 825 TGCGGCCAAATGGATAGAAGAAAAAATGGGCAAACCG----CTGCCGAG- 869
|||||..|||||||.|||..|||| |.|.|||| |||||.||
BPUM_1782___y 826 -GCGGCAGAATGGATCGAAACAAAA----GTAGACCGCACCCTGCCTAGT 870
BSNT_03016___ 870 CA--GAAATTTACAGGTG--TTTAA--ATCAT----CTTGA--- 900
|| | ||||| ||| |||.| .|||| |||.|
BPUM_1782___y 871 CATTG---TTTAC--GTGCTTTTCACTCTCATACTACTTCATAA 909
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