Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03015 and BPUM_1781

See Amino acid alignment / Visit BSNT_03015 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:32
# Commandline: needle
#    -asequence dna-align/BSNT_03015___yngF.1.24716.seq
#    -bsequence dna-align/BPUM_1781___yngF.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03015___yngF-BPUM_1781___yngF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03015___yngF-BPUM_1781___yngF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03015___yngF
# 2: BPUM_1781___yngF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 865
# Identity:     511/865 (59.1%)
# Similarity:   511/865 (59.1%)
# Gaps:         164/865 (19.0%)
# Score: 1308.5
# 
#
#=======================================

BSNT_03015___      1 --------ATGGGAGACTCTATTCTTTTTACTGTTA-AAAATGAACATAT     41
                             ||.||    ||.|    |||||| |.|| ||.|||||||.||
BPUM_1781___y      1 ATGACATCATTGG----TCAA----TTTTAC-GATACAAGATGAACAGAT     41

BSNT_03015___     42 GGCGTTGATCACCTTTAACAGGCCTCAGGCAGCAAATGCTCTTTCAGCGG     91
                     .|.|.|.||.|||||.|||||.||..|...|||||||||.|||||.||.|
BPUM_1781___y     42 TGGGATCATAACCTTAAACAGACCAGAACAAGCAAATGCCCTTTCTGCTG     91

BSNT_03015___     92 AAATGCTT----AGA--AACCTGCAAATGATTC-TTCAGGAAATTGAATT    134
                     ..||||||    |||  ||.|.||       || ||||.|||||..||..
BPUM_1781___y     92 CGATGCTTGAGGAGATCAATCAGC-------TCATTCAAGAAATCAAACA    134

BSNT_03015___    135 CAACTCAAA-CATCCGCTGCGTCATCCTCACAGGCACCGGTGAAAAAGCG    183
                     |.| |.||| ||||||||||.|..||.|.|||||..|.|||...||.|..
BPUM_1781___y    135 CGA-TGAAAGCATCCGCTGCCTGCTCTTGACAGGAGCTGGTTCTAACGTC    183

BSNT_03015___    184 TTTTGTGCAGGGGCAGACCTAAAGGAACG--GATAAA--ACTGA--AAGA    227
                     |||||.|||||.||.||..||||.||.||  |||.||  ||.||  ||||
BPUM_1781___y    184 TTTTGCGCAGGTGCTGATTTAAAAGAGCGACGATTAATGACAGAGGAAGA    233

BSNT_03015___    228 AGATCAGGTTCTGGAAAG----TGTATCTCTC-ATTCAAAGAACGGCGGC    272
                     ||  ||        ||||    .|| |||.|| |||||...|||     |
BPUM_1781___y    234 AG--CA--------AAAGAGGCAGT-TCTGTCAATTCAGCAAAC-----C    267

BSNT_03015___    273 TTTAC-----TTG-ATGCCTTGCCGCAGCCGGTCATAGCTGCGATAAATG    316
                     |||||     ||| ||.||||.|.|.| ||.|||||.||.|..|||||||
BPUM_1781___y    268 TTTACGGAGATTGAATCCCTTCCTGTA-CCTGTCATTGCCGTCATAAATG    316

BSNT_03015___    317 GAAGCGCATTAGGCGGCGGACTAGAATTGGCATTGGCATGCGACCTTCGA    366
                     ||..||||.|.|||||.|||||.|||.|.|||.||||.||.||..||||.
BPUM_1781___y    317 GACACGCACTCGGCGGAGGACTTGAACTCGCACTGGCTTGTGATATTCGC    366

BSNT_03015___    367 ATCGC---AGCTGAATC-AGCTGTGCTGGGACTTCCGGAAACAGGGTTAG    412
                     ||.||   |||.|.|.| ||    .||.|..|||||.|||||.||..|||
BPUM_1781___y    367 ATTGCACGAGCCGGAGCAAG----ACTCGCCCTTCCAGAAACTGGACTAG    412

BSNT_03015___    413 CTATTATCCCGGGCGCTGGAGGGACCCAAAGGCTGCCCCGGCTGATTGGC    462
                     ||||.||.||.||.||.|||||.||.||..|.||.||.||.||..|.||.
BPUM_1781___y    413 CTATCATACCAGGAGCAGGAGGAACGCAGCGTCTCCCGCGCCTCGTCGGA    462

BSNT_03015___    463 AGAGGAAAAGCAAAAGAATTCATTTATACAGG----------CAGACGCG    502
                     ...||.|||||||||||..||||||..|||||          |||     
BPUM_1781___y    463 CTCGGTAAAGCAAAAGAGATCATTTTCACAGGTGCTTCATTACAG-----    507

BSNT_03015___    503 TGACCGCACACGAAGCAAAAGAAATCGGCCTTGTAGAGCATGTCACGGCT    552
                          ||..|.|||||.|...||||.||.||.||.|||     |||..||
BPUM_1781___y    508 -----GCTGAAGAAGCCATTCAAATAGGACTGGTTGAG-----CACCTCT    547

BSNT_03015___    553 CCTTGTGACCTTATGCCAAAAGCAG--------AGGAACTGGCCGCAGCC    594
                     |.||                |||||        |.||| ||.|    |||
BPUM_1781___y    548 CATT----------------AGCAGATTCCCTAATGAA-TGAC----GCC    576

BSNT_03015___    595 ATTTCTGCC------------------AACGGGCCGATCGCTGTCCGTCA    626
                     ||||||..|                  |||||.||.||.|||.|.....|
BPUM_1781___y    577 ATTTCTCTCGCAAAACAAATTTCAAAAAACGGTCCAATTGCTTTAAAAGA    626

BSNT_03015___    627 GGCTAAATTTGCAATCAAT--AAAGGA---TTGGAGACAGATCT-CGCTA    670
                     .||.|||    |.|.|.||  |||.||   |||...|| ||||| || ||
BPUM_1781___y    627 AGCGAAA----CGAGCGATTCAAATGAGCCTTGATCAC-GATCTACG-TA    670

BSNT_03015___    671 CAGGCCTTG-CGATTGAACAAAAAGCGTATGAACAAACCATCCCGACAAA    719
                     |||| .||| .||..|||.|..||||.|||..||....|||....|||.|
BPUM_1781___y    671 CAGG-TTTGATGAAGGAATACGAAGCCTATTTACGGCTCATTGATACAGA    719

BSNT_03015___    720 AGACAGGAGAGAAGGGCTTCAGGCCTTTCAAGAAAAAAGACGGGCCGTA-    768
                     |||..|.||.|||||.|||||.||.||||||||||||.|| |.|||..| 
BPUM_1781___y    720 AGATCGAAGGGAAGGCCTTCAAGCTTTTCAAGAAAAACGA-GCGCCTCAT    768

BSNT_03015___    769 TACAAGGGAATATAA    783
                     ||||.|||.|..||.
BPUM_1781___y    769 TACAGGGGCAACTAG    783


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03015 and BPUM_1781

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
