Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04987 and BPUM_1778
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:43
# Commandline: needle
# -asequence dna-align/BSNT_04987___yvgQ.1.24716.seq
# -bsequence dna-align/BPUM_1778___cysI.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04987___yvgQ-BPUM_1778___cysI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04987___yvgQ-BPUM_1778___cysI.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04987___yvgQ
# 2: BPUM_1778___cysI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1756
# Identity: 1313/1756 (74.8%)
# Similarity: 1313/1756 (74.8%)
# Gaps: 77/1756 ( 4.4%)
# Score: 4711.5
#
#
#=======================================
BSNT_04987___ 1 ATGGTGA--CCAAAATTCTAAAAGCACCGGACGGCTCTCCAAGTGATGTT 48
||||||| .||..|| |||.|||.|||||.||..||||.||.||.||.
BPUM_1778___c 1 ATGGTGAAGACAGCAT--TAACAGCGCCGGAAGGACCTCCGAGCGACGTA 48
BSNT_04987___ 49 GAACGCATTAAAAAAGAAAGTGATTATTTGCGCGGCACGCTGAAAGAAGT 98
|||...||.|||.||.|||||||||||||.||.||.|||.|.||||||||
BPUM_1778___c 49 GAAGAAATCAAAGAAAAAAGTGATTATTTACGGGGTACGTTAAAAGAAGT 98
BSNT_04987___ 99 GATGCTCGATCGAA--TCAGTGCGGGAATTCCGGATGATGATAACCGCCT 146
.|||||.||||..| ||| |||||||||||.||||||||.||||||||
BPUM_1778___c 99 AATGCTTGATCCGATTTCA--GCGGGAATTCCTGATGATGACAACCGCCT 146
BSNT_04987___ 147 GATGAAACACCACGGCAGTTATTTGCAGGATGACCGCGACCTCCGAAATG 196
.|||||.||.||||||||.|||||.||||||||.||.||||||.||||||
BPUM_1778___c 147 AATGAAGCATCACGGCAGCTATTTACAGGATGATCGGGACCTCAGAAATG 196
BSNT_04987___ 197 AACGCCAAAAGCAGAAGCTTGAGCCCGCATATCAGTTCATGCTGCGCGTG 246
||||.||.||.||.||.|||||.||.||.|||||.||.|||||.|||||.
BPUM_1778___c 197 AACGGCAGAAACAAAAACTTGAACCAGCCTATCAATTTATGCTACGCGTA 246
BSNT_04987___ 247 CGTATGCCAGGGGGCGTCTCGACGCCTGAACAATGGCTTGTCATGGATGA 296
||..||||.||.||..||.|.||..||.|.||.||||||||.||||||||
BPUM_1778___c 247 CGCCTGCCTGGTGGAATCGCCACATCTAAGCAGTGGCTTGTGATGGATGA 296
BSNT_04987___ 297 CCTGTCCCAGAAATACGGGAACGGCACATTAAAATTGACGACACGTGAAA 346
.||..|.||.|||||.||.|||||.||.|||||..||||.||.|||||||
BPUM_1778___c 297 GCTTGCTCACAAATATGGAAACGGAACGTTAAAGCTGACTACTCGTGAAA 346
BSNT_04987___ 347 CATTCCAAATGCACGGAATTCTGAAATGGAACATGAAGAAAACCATTC-A 395
|.||.||..|.||.||.|||.|.||||||||.|||||.|||||||||| |
BPUM_1778___c 347 CCTTTCAGCTTCATGGTATTTTAAAATGGAATATGAAAAAAACCATTCAA 396
BSNT_04987___ 396 GACGATCCACTCAGCACTTT--TGGATACGATCGCAGCCTGCGGAGACGT 443
||| ||.||.|| .|||.| |.|||||.||.||.||.|||||.|||||
BPUM_1778___c 397 GAC-ATTCATTC--TACTATGCTTGATACAATTGCTGCTTGCGGCGACGT 443
BSNT_04987___ 444 AAACCGTAACGTCATGTGTGCATCAAACCCTTATCAATCTGAAATCCACT 493
.|||||.||.|||||||||.||||||||||.||||||||.|||.|.|||
BPUM_1778___c 444 GAACCGGAATGTCATGTGTACATCAAACCCCTATCAATCAGAAGTGCAC- 492
BSNT_04987___ 494 CA-GAGGTATACGAG-TGGTCTAAAAAATTAAGTGATGATCTGCTGCCGC 541
|| ||.||||||||| ||| |.|||||||||||||||||..||||.||||
BPUM_1778___c 493 CATGATGTATACGAGCTGG-CGAAAAAATTAAGTGATGACTTGCTCCCGC 541
BSNT_04987___ 542 GGACGAGAGCATATCATGAAATTTGGCTTGATGAGGA-AAGAGTTGCCGG 590
..||.|||||.|||||||||||||||||||||||||| ||| |||| |||
BPUM_1778___c 542 AAACAAGAGCGTATCATGAAATTTGGCTTGATGAGGAGAAG-GTTG-CGG 589
BSNT_04987___ 591 C-ACGCCGGAGGAAGAAGTCGAGCCAATGTACGGACCGCTCTATCTGCCG 639
| |||||.||....|||||.||.||.|||||.||.|||||.|||.|.||.
BPUM_1778___c 590 CAACGCCTGATACGGAAGTTGAACCGATGTATGGCCCGCTTTATTTACCA 639
BSNT_04987___ 640 CGGAAGTTTAAAATCGGTATTGCCGTTCCGCCGTCTAATGATATTGACGT 689
.||||.||.|||||.|||.|.||.||.||.||..||||.||||||||.||
BPUM_1778___c 640 AGGAAATTCAAAATTGGTGTGGCGGTCCCTCCTGCTAACGATATTGATGT 689
BSNT_04987___ 690 CTTTTCACAAGATCTGGGATTCATTGCGATTGTCGAGGATG-GCAAGCTG 738
||||||.||||||.|.||.||||||||.||..||||..||| .||| .||
BPUM_1778___c 690 CTTTTCGCAAGATTTAGGCTTCATTGCCATCATCGAAAATGAACAA-TTG 738
BSNT_04987___ 739 ATCGGTTTTAACGTGGCAATCGGCGGCGGTATGGGAATGACGCATGGCGA 788
|||||.|||||.||.||.||.||||||||.|||||.|||||.|||||.||
BPUM_1778___c 739 ATCGGCTTTAATGTCGCCATTGGCGGCGGCATGGGTATGACTCATGGTGA 788
BSNT_04987___ 789 TACTGCGACATATCCGCAATTAGCCAAGGTGATCGGTTTCTGCCGGCCTG 838
|||.|||||.|||||.||..|.||.||.|||||.||.||.||....||.|
BPUM_1778___c 789 TACAGCGACCTATCCTCAGCTTGCAAAAGTGATTGGCTTTTGTACACCAG 838
BSNT_04987___ 839 AGCAAAT-GTATGACGTTGCTGAAAAAAC----GATTACGATTCAGCGTG 883
|.||..| ||| ||..|||| ||||| ||||||.||||||||||
BPUM_1778___c 839 AACAGGTCGTA-GAGATTGC----AAAACAAGTGATTACCATTCAGCGTG 883
BSNT_04987___ 884 ATTACGGCAACCGTTCTGTCCGTAAAAATGCGCGGTTCAAATACACAGTT 933
|.|||||.||.|||||.||.||.||||||||.||.||.|||||.||.||.
BPUM_1778___c 884 ACTACGGAAATCGTTCCGTGCGAAAAAATGCCCGCTTTAAATATACGGTG 933
BSNT_04987___ 934 GACCGCCTCGGTTTAGAAAACGTAAAAGAAGAATTGGAAAACCGTCTCGG 983
||||||||.|||.|.||.||.|||||||||||..||||...|||.|||||
BPUM_1778___c 934 GACCGCCTTGGTCTTGAGAATGTAAAAGAAGAGCTGGAGGGCCGCCTCGG 983
BSNT_04987___ 984 CTGGAGCCTGGAAGAAGCGAAGCCG--TATCATTTCGATCATAACGGCGA 1031
.|....|||...|||||| ||| .| |||||.||.|||||||||||.||
BPUM_1778___c 984 GTTTGCCCTTTTAGAAGC-AAG-AGATTATCACTTTGATCATAACGGTGA 1031
BSNT_04987___ 1032 CCGCTATGGCTGGGTGGAAGGCATCGAGGATAAATGGCATTTCACGCTGT 1081
|||.|||||||||||..||||||||.|.|..|.||||||||..|||.|||
BPUM_1778___c 1032 CCGTTATGGCTGGGTAAAAGGCATCAATGGCAGATGGCATTATACGATGT 1081
BSNT_04987___ 1082 TTGTCGAAGGCGGCCGTATAACGGATTACGATGATTATAAGCTGATGACT 1131
||||.||||||||.||.||.|..|||||.|||||||||...||.|||||.
BPUM_1778___c 1082 TTGTAGAAGGCGGACGCATCATAGATTATGATGATTATCCTCTAATGACA 1131
BSNT_04987___ 1132 GGCTTGCGGGAAATCGCCAAAG-TTCATACAGGTGAGTTCCGGCTGACAG 1180
|||.|.||.||||||| ||||| |||||.|||||||.|||||..|.||||
BPUM_1778___c 1132 GGCATTCGTGAAATCG-CAAAGATTCATTCAGGTGACTTCCGCTTAACAG 1180
BSNT_04987___ 1181 CCAATCAGAACTTAATGATTGCGAACGT---TTCAAGCGATAAAAAAGAA 1227
|.|||||.||.||.||.||||..||.|| ||| |.|.||| ||
BPUM_1778___c 1181 CAAATCAAAATTTGATCATTGGAAATGTCACTTC------TCATAAA-AA 1223
BSNT_04987___ 1228 GAAATCAGTGCTTTAATTGAACA----ATA--------CGGACTAACTGA 1265
|||| || ||||||.|| ||| |||..||.|.||
BPUM_1778___c 1224 GAAA-CA-------AATTGAGCAGCTTATACAGGAGTTCGGTTTATCAGA 1265
BSNT_04987___ 1266 CGGCAAGCACTATTCAGCGCTTCGCCGCAGCTCGATGGCGTGCGTCGCTC 1315
.||..||||..|.||.||.||.|||||.||.||.|||||.||.||.||||
BPUM_1778___c 1266 TGGTCAGCAGCACTCTGCACTCCGCCGTAGTTCAATGGCCTGTGTTGCTC 1315
BSNT_04987___ 1316 TTCCGACCTGCGGATTGGCAATGGCTGAAGCAGAACGTTATTTGCCGACC 1365
|||||||.|||||.||.||.|||||.|||||||||||.||..|.|||..|
BPUM_1778___c 1316 TTCCGACATGCGGCTTAGCGATGGCAGAAGCAGAACGCTACCTCCCGCGC 1365
BSNT_04987___ 1366 CTGTTAGATAAGATTGAAGAGATTATTGACGAAAACGGCCTTCGTGATCA 1415
.||.|.||.||.||||||||||||.|.||.|||||||||.|..|||||.|
BPUM_1778___c 1366 TTGATTGACAAAATTGAAGAGATTGTCGAAGAAAACGGCTTAAGTGATAA 1415
BSNT_04987___ 1416 GGAAATCACCATTCGCATGACAGGATGCCCGAACGGCTGTGCACGTCATG 1465
.||||||||.|||||.|||||.||.||.||.||.||.|||||.|||||||
BPUM_1778___c 1416 AGAAATCACGATTCGTATGACTGGTTGTCCTAATGGATGTGCCCGTCATG 1465
BSNT_04987___ 1466 CACTCGGTGAGATCGGATTTATCGGAAAGGCGCCGGGCAAATATAATATG 1515
|.||.|||||.||.||.||||||||.||..|.||.||||||||.||.|||
BPUM_1778___c 1466 CGCTAGGTGAAATTGGCTTTATCGGGAAATCACCTGGCAAATACAACATG 1515
BSNT_04987___ 1516 TATCTTGGCGCTGCGTTTGACGGAAGCCGTTTAAGCAAAATGTACCGTGA 1565
||||||||||||||||||||.||.|||.|.|||||.||..||||||||||
BPUM_1778___c 1516 TATCTTGGCGCTGCGTTTGATGGTAGCAGATTAAGTAAGCTGTACCGTGA 1565
BSNT_04987___ 1566 AAACATCGGTGAAGCAGACATTTTAAGCGAGCTGCGCATC-CTTCTTTCC 1614
|||..|.|||||.|.|||.|||||||..|||||..|| || |||||..|.
BPUM_1778___c 1566 AAATGTTGGTGAGGAAGAGATTTTAAATGAGCTTGGC-TCTCTTCTCCCA 1614
BSNT_04987___ 1615 CGCTATGCGAAAGAACGTGAGGAAGGCGAGCATTTCGGTGACTTTGTCAT 1664
||||||||.|||||.||.||.|||...||.|||||||||||.|||||..|
BPUM_1778___c 1615 CGCTATGCAAAAGAGCGAGAAGAAAAAGAACATTTCGGTGATTTTGTTGT 1664
BSNT_04987___ 1665 CCGCGCGGGCATTATCAAAGCAACAACTGACGGTACGAATTTTCATG--- 1711
.||.||.||.|||.||||||.||||||.||.||.|||||.|||||||
BPUM_1778___c 1665 TCGAGCAGGGATTGTCAAAGAAACAACAGATGGCACGAACTTTCATGTGC 1714
BSNT_04987___ 1712 -ATTGA 1716
||.|
BPUM_1778___c 1715 AATAG- 1719
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