Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04987 and BPUM_1778

See Amino acid alignment / Visit BSNT_04987 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:43
# Commandline: needle
#    -asequence dna-align/BSNT_04987___yvgQ.1.24716.seq
#    -bsequence dna-align/BPUM_1778___cysI.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04987___yvgQ-BPUM_1778___cysI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04987___yvgQ-BPUM_1778___cysI.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04987___yvgQ
# 2: BPUM_1778___cysI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1756
# Identity:    1313/1756 (74.8%)
# Similarity:  1313/1756 (74.8%)
# Gaps:          77/1756 ( 4.4%)
# Score: 4711.5
# 
#
#=======================================

BSNT_04987___      1 ATGGTGA--CCAAAATTCTAAAAGCACCGGACGGCTCTCCAAGTGATGTT     48
                     |||||||  .||..||  |||.|||.|||||.||..||||.||.||.||.
BPUM_1778___c      1 ATGGTGAAGACAGCAT--TAACAGCGCCGGAAGGACCTCCGAGCGACGTA     48

BSNT_04987___     49 GAACGCATTAAAAAAGAAAGTGATTATTTGCGCGGCACGCTGAAAGAAGT     98
                     |||...||.|||.||.|||||||||||||.||.||.|||.|.||||||||
BPUM_1778___c     49 GAAGAAATCAAAGAAAAAAGTGATTATTTACGGGGTACGTTAAAAGAAGT     98

BSNT_04987___     99 GATGCTCGATCGAA--TCAGTGCGGGAATTCCGGATGATGATAACCGCCT    146
                     .|||||.||||..|  |||  |||||||||||.||||||||.||||||||
BPUM_1778___c     99 AATGCTTGATCCGATTTCA--GCGGGAATTCCTGATGATGACAACCGCCT    146

BSNT_04987___    147 GATGAAACACCACGGCAGTTATTTGCAGGATGACCGCGACCTCCGAAATG    196
                     .|||||.||.||||||||.|||||.||||||||.||.||||||.||||||
BPUM_1778___c    147 AATGAAGCATCACGGCAGCTATTTACAGGATGATCGGGACCTCAGAAATG    196

BSNT_04987___    197 AACGCCAAAAGCAGAAGCTTGAGCCCGCATATCAGTTCATGCTGCGCGTG    246
                     ||||.||.||.||.||.|||||.||.||.|||||.||.|||||.|||||.
BPUM_1778___c    197 AACGGCAGAAACAAAAACTTGAACCAGCCTATCAATTTATGCTACGCGTA    246

BSNT_04987___    247 CGTATGCCAGGGGGCGTCTCGACGCCTGAACAATGGCTTGTCATGGATGA    296
                     ||..||||.||.||..||.|.||..||.|.||.||||||||.||||||||
BPUM_1778___c    247 CGCCTGCCTGGTGGAATCGCCACATCTAAGCAGTGGCTTGTGATGGATGA    296

BSNT_04987___    297 CCTGTCCCAGAAATACGGGAACGGCACATTAAAATTGACGACACGTGAAA    346
                     .||..|.||.|||||.||.|||||.||.|||||..||||.||.|||||||
BPUM_1778___c    297 GCTTGCTCACAAATATGGAAACGGAACGTTAAAGCTGACTACTCGTGAAA    346

BSNT_04987___    347 CATTCCAAATGCACGGAATTCTGAAATGGAACATGAAGAAAACCATTC-A    395
                     |.||.||..|.||.||.|||.|.||||||||.|||||.|||||||||| |
BPUM_1778___c    347 CCTTTCAGCTTCATGGTATTTTAAAATGGAATATGAAAAAAACCATTCAA    396

BSNT_04987___    396 GACGATCCACTCAGCACTTT--TGGATACGATCGCAGCCTGCGGAGACGT    443
                     ||| ||.||.||  .|||.|  |.|||||.||.||.||.|||||.|||||
BPUM_1778___c    397 GAC-ATTCATTC--TACTATGCTTGATACAATTGCTGCTTGCGGCGACGT    443

BSNT_04987___    444 AAACCGTAACGTCATGTGTGCATCAAACCCTTATCAATCTGAAATCCACT    493
                     .|||||.||.|||||||||.||||||||||.||||||||.|||.|.||| 
BPUM_1778___c    444 GAACCGGAATGTCATGTGTACATCAAACCCCTATCAATCAGAAGTGCAC-    492

BSNT_04987___    494 CA-GAGGTATACGAG-TGGTCTAAAAAATTAAGTGATGATCTGCTGCCGC    541
                     || ||.||||||||| ||| |.|||||||||||||||||..||||.||||
BPUM_1778___c    493 CATGATGTATACGAGCTGG-CGAAAAAATTAAGTGATGACTTGCTCCCGC    541

BSNT_04987___    542 GGACGAGAGCATATCATGAAATTTGGCTTGATGAGGA-AAGAGTTGCCGG    590
                     ..||.|||||.|||||||||||||||||||||||||| ||| |||| |||
BPUM_1778___c    542 AAACAAGAGCGTATCATGAAATTTGGCTTGATGAGGAGAAG-GTTG-CGG    589

BSNT_04987___    591 C-ACGCCGGAGGAAGAAGTCGAGCCAATGTACGGACCGCTCTATCTGCCG    639
                     | |||||.||....|||||.||.||.|||||.||.|||||.|||.|.||.
BPUM_1778___c    590 CAACGCCTGATACGGAAGTTGAACCGATGTATGGCCCGCTTTATTTACCA    639

BSNT_04987___    640 CGGAAGTTTAAAATCGGTATTGCCGTTCCGCCGTCTAATGATATTGACGT    689
                     .||||.||.|||||.|||.|.||.||.||.||..||||.||||||||.||
BPUM_1778___c    640 AGGAAATTCAAAATTGGTGTGGCGGTCCCTCCTGCTAACGATATTGATGT    689

BSNT_04987___    690 CTTTTCACAAGATCTGGGATTCATTGCGATTGTCGAGGATG-GCAAGCTG    738
                     ||||||.||||||.|.||.||||||||.||..||||..||| .||| .||
BPUM_1778___c    690 CTTTTCGCAAGATTTAGGCTTCATTGCCATCATCGAAAATGAACAA-TTG    738

BSNT_04987___    739 ATCGGTTTTAACGTGGCAATCGGCGGCGGTATGGGAATGACGCATGGCGA    788
                     |||||.|||||.||.||.||.||||||||.|||||.|||||.|||||.||
BPUM_1778___c    739 ATCGGCTTTAATGTCGCCATTGGCGGCGGCATGGGTATGACTCATGGTGA    788

BSNT_04987___    789 TACTGCGACATATCCGCAATTAGCCAAGGTGATCGGTTTCTGCCGGCCTG    838
                     |||.|||||.|||||.||..|.||.||.|||||.||.||.||....||.|
BPUM_1778___c    789 TACAGCGACCTATCCTCAGCTTGCAAAAGTGATTGGCTTTTGTACACCAG    838

BSNT_04987___    839 AGCAAAT-GTATGACGTTGCTGAAAAAAC----GATTACGATTCAGCGTG    883
                     |.||..| ||| ||..||||    |||||    ||||||.||||||||||
BPUM_1778___c    839 AACAGGTCGTA-GAGATTGC----AAAACAAGTGATTACCATTCAGCGTG    883

BSNT_04987___    884 ATTACGGCAACCGTTCTGTCCGTAAAAATGCGCGGTTCAAATACACAGTT    933
                     |.|||||.||.|||||.||.||.||||||||.||.||.|||||.||.||.
BPUM_1778___c    884 ACTACGGAAATCGTTCCGTGCGAAAAAATGCCCGCTTTAAATATACGGTG    933

BSNT_04987___    934 GACCGCCTCGGTTTAGAAAACGTAAAAGAAGAATTGGAAAACCGTCTCGG    983
                     ||||||||.|||.|.||.||.|||||||||||..||||...|||.|||||
BPUM_1778___c    934 GACCGCCTTGGTCTTGAGAATGTAAAAGAAGAGCTGGAGGGCCGCCTCGG    983

BSNT_04987___    984 CTGGAGCCTGGAAGAAGCGAAGCCG--TATCATTTCGATCATAACGGCGA   1031
                     .|....|||...|||||| ||| .|  |||||.||.|||||||||||.||
BPUM_1778___c    984 GTTTGCCCTTTTAGAAGC-AAG-AGATTATCACTTTGATCATAACGGTGA   1031

BSNT_04987___   1032 CCGCTATGGCTGGGTGGAAGGCATCGAGGATAAATGGCATTTCACGCTGT   1081
                     |||.|||||||||||..||||||||.|.|..|.||||||||..|||.|||
BPUM_1778___c   1032 CCGTTATGGCTGGGTAAAAGGCATCAATGGCAGATGGCATTATACGATGT   1081

BSNT_04987___   1082 TTGTCGAAGGCGGCCGTATAACGGATTACGATGATTATAAGCTGATGACT   1131
                     ||||.||||||||.||.||.|..|||||.|||||||||...||.|||||.
BPUM_1778___c   1082 TTGTAGAAGGCGGACGCATCATAGATTATGATGATTATCCTCTAATGACA   1131

BSNT_04987___   1132 GGCTTGCGGGAAATCGCCAAAG-TTCATACAGGTGAGTTCCGGCTGACAG   1180
                     |||.|.||.||||||| ||||| |||||.|||||||.|||||..|.||||
BPUM_1778___c   1132 GGCATTCGTGAAATCG-CAAAGATTCATTCAGGTGACTTCCGCTTAACAG   1180

BSNT_04987___   1181 CCAATCAGAACTTAATGATTGCGAACGT---TTCAAGCGATAAAAAAGAA   1227
                     |.|||||.||.||.||.||||..||.||   |||      |.|.||| ||
BPUM_1778___c   1181 CAAATCAAAATTTGATCATTGGAAATGTCACTTC------TCATAAA-AA   1223

BSNT_04987___   1228 GAAATCAGTGCTTTAATTGAACA----ATA--------CGGACTAACTGA   1265
                     |||| ||       ||||||.||    |||        |||..||.|.||
BPUM_1778___c   1224 GAAA-CA-------AATTGAGCAGCTTATACAGGAGTTCGGTTTATCAGA   1265

BSNT_04987___   1266 CGGCAAGCACTATTCAGCGCTTCGCCGCAGCTCGATGGCGTGCGTCGCTC   1315
                     .||..||||..|.||.||.||.|||||.||.||.|||||.||.||.||||
BPUM_1778___c   1266 TGGTCAGCAGCACTCTGCACTCCGCCGTAGTTCAATGGCCTGTGTTGCTC   1315

BSNT_04987___   1316 TTCCGACCTGCGGATTGGCAATGGCTGAAGCAGAACGTTATTTGCCGACC   1365
                     |||||||.|||||.||.||.|||||.|||||||||||.||..|.|||..|
BPUM_1778___c   1316 TTCCGACATGCGGCTTAGCGATGGCAGAAGCAGAACGCTACCTCCCGCGC   1365

BSNT_04987___   1366 CTGTTAGATAAGATTGAAGAGATTATTGACGAAAACGGCCTTCGTGATCA   1415
                     .||.|.||.||.||||||||||||.|.||.|||||||||.|..|||||.|
BPUM_1778___c   1366 TTGATTGACAAAATTGAAGAGATTGTCGAAGAAAACGGCTTAAGTGATAA   1415

BSNT_04987___   1416 GGAAATCACCATTCGCATGACAGGATGCCCGAACGGCTGTGCACGTCATG   1465
                     .||||||||.|||||.|||||.||.||.||.||.||.|||||.|||||||
BPUM_1778___c   1416 AGAAATCACGATTCGTATGACTGGTTGTCCTAATGGATGTGCCCGTCATG   1465

BSNT_04987___   1466 CACTCGGTGAGATCGGATTTATCGGAAAGGCGCCGGGCAAATATAATATG   1515
                     |.||.|||||.||.||.||||||||.||..|.||.||||||||.||.|||
BPUM_1778___c   1466 CGCTAGGTGAAATTGGCTTTATCGGGAAATCACCTGGCAAATACAACATG   1515

BSNT_04987___   1516 TATCTTGGCGCTGCGTTTGACGGAAGCCGTTTAAGCAAAATGTACCGTGA   1565
                     ||||||||||||||||||||.||.|||.|.|||||.||..||||||||||
BPUM_1778___c   1516 TATCTTGGCGCTGCGTTTGATGGTAGCAGATTAAGTAAGCTGTACCGTGA   1565

BSNT_04987___   1566 AAACATCGGTGAAGCAGACATTTTAAGCGAGCTGCGCATC-CTTCTTTCC   1614
                     |||..|.|||||.|.|||.|||||||..|||||..|| || |||||..|.
BPUM_1778___c   1566 AAATGTTGGTGAGGAAGAGATTTTAAATGAGCTTGGC-TCTCTTCTCCCA   1614

BSNT_04987___   1615 CGCTATGCGAAAGAACGTGAGGAAGGCGAGCATTTCGGTGACTTTGTCAT   1664
                     ||||||||.|||||.||.||.|||...||.|||||||||||.|||||..|
BPUM_1778___c   1615 CGCTATGCAAAAGAGCGAGAAGAAAAAGAACATTTCGGTGATTTTGTTGT   1664

BSNT_04987___   1665 CCGCGCGGGCATTATCAAAGCAACAACTGACGGTACGAATTTTCATG---   1711
                     .||.||.||.|||.||||||.||||||.||.||.|||||.|||||||   
BPUM_1778___c   1665 TCGAGCAGGGATTGTCAAAGAAACAACAGATGGCACGAACTTTCATGTGC   1714

BSNT_04987___   1712 -ATTGA   1716
                      ||.| 
BPUM_1778___c   1715 AATAG-   1719


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