Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04879 and BPUM_1766
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:37
# Commandline: needle
# -asequence dna-align/BSNT_04879___yusP.1.24716.seq
# -bsequence dna-align/BPUM_1766.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04879___yusP-BPUM_1766.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04879___yusP-BPUM_1766.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04879___yusP
# 2: BPUM_1766
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1985
# Identity: 943/1985 (47.5%)
# Similarity: 943/1985 (47.5%)
# Gaps: 751/1985 (37.8%)
# Score: 1921.0
#
#
#=======================================
BSNT_04879___ 1 ------------------------------AT---GAAAATGAGTAAAGA 17
|| .|||||.||.|.|||
BPUM_1766 1 ATGTTTTCTTCCTTTATATTTAAGTTGATCATAGCAAAAATAAGAAGAGA 50
BSNT_04879___ 18 AGGCAAAC--------AATCAAAACGAACGTTAT-----TAAT------- 47
|.|.||.| ||| .|||.||| |.|| ||||
BPUM_1766 51 ACGTAAGCAGGGGGTAAAT-GAAATGAA--TCATGTGGATAATGGTAAGG 97
BSNT_04879___ 48 ----AACAGGCTTAATTATTGCCAT--GTTT-----------TTTT---- 76
.||..||| ||.|||.||| |||| ||||
BPUM_1766 98 CATCCACTCGCT---TTGTTGTCATCGGTTTGCTGTTAGGAATTTTCATG 144
BSNT_04879___ 77 -CAGCCCTTGACGG----TACCATTGTCGGAACGGCCATGCCGAAA--AT 119
|||| ||.|| |||||||||.|.|||.||.||| |.|| ||
BPUM_1766 145 GCAGC----GATGGATAATACCATTGTTGCAACAGCGATG--GGAAGCAT 188
BSNT_04879___ 120 TGTCGGTGATCTGGGCGGTTTGAGCATGATGA-----CCTGGCTGACAAC 164
.||.|..|||.|||||.|||| ||||.| |.|||.||||..|
BPUM_1766 189 CGTAGCAGATTTGGGCAGTTT-----TGATAAATTTGCTTGGGTGACGGC 233
BSNT_04879___ 165 TGCATATTTGTTAACATCAACAACCATTGTTCCAATTGCCGGTAAACTGG 214
|.|.|||.|| .||.|||||| |||
BPUM_1766 234 TTCTTATATG-------------------------GTGGCGGTAA--TGG 256
BSNT_04879___ 215 CT--------GATTTATTGGGACGCCGCATTGTC---TATGTA------- 246
|| |||||| .||.|.|| |.|| ||||||
BPUM_1766 257 CTGGAATGCCGATTTA-CGGAAAGC-----TTTCTGATATGTATGGTCGA 300
BSNT_04879___ 247 -----------TCAGGTTTGA-TTATTTTC-------ATGGCCGCTTCTG 277
||.|.||.|| |||||||| .||| .||||
BPUM_1766 301 AAGCGTTTTTTTCTGTTTGGACTTATTTTCTTTTTAATTGG----ATCTG 346
BSNT_04879___ 278 CTTTGTGCGGAATGGCCAACAACATGACGG---AATTGATTATCTTCCGT 324
|..|||||||.||.|| |||| |.||.|| ||.|.|||||.|.|||.
BPUM_1766 347 CGCTGTGCGGTATCGC--ACAA-ACGATGGATCAACTCATTATTTACCGA 393
BSNT_04879___ 325 GGACTGCAGGGAATCGGCGGAGG----CATCATGATGCCGATGGCGATGA 370
|...|.||.||..|.||.||.|| |.|| |.||.||.|||.|.|
BPUM_1766 394 GCCATTCAAGGGCTTGGAGGCGGTGCCCTTC----TTCCAATCGCGTTTA 439
BSNT_04879___ 371 TTGTCATCGGTGACTTGTTCACAG---GAAAACAGCGTGCTAAAT-TCCA 416
...|||||..|||..|.||| |.| |||||..||| |..|||| |||
BPUM_1766 440 CAATCATCTTTGATATCTTC-CCGCCTGAAAAGCGCG-GAAAAATGTCC- 486
BSNT_04879___ 417 AGGTGTCTTTGGCGCAAT-TTACGGGCTGGCTT---CAGTG--ATTGGGC 460
|||.|.|||||.|||.| || |||.|| .|||| .|.||.|
BPUM_1766 487 -GGTATGTTTGGTGCAGTGTT------TGGTTTATCGAGTGTACTAGGAC 529
BSNT_04879___ 461 CGCAAATCGGCGGCTGGATTGT---AGACTCGTTAAACTGGAAATGGGTT 507
|.|...|.|| .||| |||.| |||.|||.|....|||.|.||||||
BPUM_1766 530 CACTTTTAGG-AGCT--ATTATCACAGATTCGATCGGTTGGCACTGGGTT 576
BSNT_04879___ 508 TTCTATATTAATCTGCCAGTCGGAATTATTGCGGTTATTTTTATTGCCAG 557
|||||||||||..|.|||.||||.|||.||...||..|.||.|||||.||
BPUM_1766 577 TTCTATATTAACGTACCAATCGGTATTGTTAGTGTGTTCTTGATTGCTAG 626
BSNT_04879___ 558 ---------GGGATTACAGGGA---CGCCAGCA-------GACTGGGCCG 588
||.||..|.||.| ||..|||| ||||||
BPUM_1766 627 ATACTACCAGGAATCGCTGGAACATCGGAAGCAGAAAATTGACTGG---- 672
BSNT_04879___ 589 ATCAACTTCGATATCGCTGGTATTTTCACAATGATTGTGGGTGTGGTCAG 638
||| |||..|.|||||.|..|.||||..||.||.||
BPUM_1766 673 -TCA--------------GGTGCTATCACACTTGTCGTGGCGGTTGTGAG 707
BSNT_04879___ 639 CCTCCTGCTCGC-CTTAAGCTTTGGCGGAAAAGATTATGCATGGGATTCA 687
|.|..||.|.|| |||.||| |||||||.|||..||||||.|||||||||
BPUM_1766 708 CTTGATGTTTGCTCTTGAGC-TTGGCGGTAAATCTTATGCGTGGGATTCA 756
BSNT_04879___ 688 TGGCAGATTCTTGGGTTGTTCGC------TCTCGCACTGATCGGCATTGT 731
..|||.||.||.....|.||.|| |||.| ||.||||.|.|.|
BPUM_1766 757 GTGCAAATCCTCACACTTTTTGCTGTATTTCTTG---TGTTCGGTACTAT 803
BSNT_04879___ 732 CAGCTTTA----TCATCGTAGAATCAAAAGCAAAAGAGCCAATCCTGCCA 777
|..||||| |.|.||| |||||..|.||.||.||
BPUM_1766 804 CTTCTTTATTGTTGAGCGT-------AAAGCGGAGGAACCGAT------- 839
BSNT_04879___ 778 ATGTATT----------TATTTAAAAACAGAACATTT---ACATTTCTAA 814
|||| |.||||||||..|...|||| ||||.||.||
BPUM_1766 840 ---TATTTCATTTTGGATGTTTAAAAATCGTTTATTTGCGACATCTCAAA 886
BSNT_04879___ 815 ACTTGATCGGC-TTCTT-TATGAGTATCGG---------TATGTTTGGCG 853
..|| ||| ||||| |||| .||| |||..|||.||
BPUM_1766 887 TTTT----GGCGTTCTTATATG----GCGGAACATTTATTATTCTTGCCG 928
BSNT_04879___ 854 CCATTACATTTGTTCCTTTCTTTATGCAGGGAATTGTCGGTGTAAG---- 899
.| ||..|||||.|.||..|.|||| |||||||.|
BPUM_1766 929 TC------TTCATTCCTATTTTCGTTCAGG-------CGGTGTACGGAGA 965
BSNT_04879___ 900 ---TGCGTCTGAATCGGGTACA------ATTATGACACCGATGATGATT- 939
||||.| || ||.|| |||.|.||.||||||||||||
BPUM_1766 966 ATCTGCGAC--AA----GTGCAGGATTCATTTTAACGCCGATGATGATTG 1009
BSNT_04879___ 940 --TCTATGATTATCACAAGTATCATCGGCGGA------CAG--------- 972
|||.|.|||..| |||||.||.||.||| |||
BPUM_1766 1010 GGTCTGTCATTGGC---AGTATGATTGGTGGAACGATGCAGACGAAAGTG 1056
BSNT_04879___ 973 -CTT------GT-TTATAAAATCGG-GAT-----TAAACCGCAAATCATT 1008
||| || |||| || ||| |.|.| |||||
BPUM_1766 1057 CCTTTCAGACGTCTTAT------GGCGATCTCTGTTATC------TCATT 1094
BSNT_04879___ 1009 ----GCAGGCATGCTGGT---------TATGGCCGGCGGATTCCTG---C 1042
||.||.||||||.| ||||.| .|||| |
BPUM_1766 1095 TTTCGCGGGAATGCTGCTGCTTGCCAATATGTC--------ACCTGATAC 1136
BSNT_04879___ 1043 TGTTAACGACATTGGATCTC---------GACACGAGCAAGCT----TGT 1079
.|.|| |||.||||.||.| ||....|.||.||| |||
BPUM_1766 1137 AGCTA--GACTTTGGCTCACCATCTTTATGATGATATCAGGCTTTGGTGT 1184
BSNT_04879___ 1080 C-GCTACATCTT-----TTATGGCG---------ATTATTGGTCTGGGAA 1114
| |||.||.||| ||.||.|| ||.|.||.|||
BPUM_1766 1185 CGGCTTCAGCTTCTCCCTTCTGCCGTCAGCTTCAATGAATGATCT----- 1229
BSNT_04879___ 1115 TGGGTCTTGTTA---------TGCCGATTCTGAC--ATTGGC-TTTACAG 1152
||...||.|||| ||||.|.|| ||| ||| | ||||...
BPUM_1766 1230 TGCCCCTCGTTACCGAGGCAGTGCCAACTC-GACCAATT--CATTTATGA 1276
BSNT_04879___ 1153 GAAAGCTTTTCGAAGGAGGA-GCTTGGAGTTGTCAC-------------- 1187
||...||| .|||.|| .||||| ||||||
BPUM_1766 1277 GATCACTT-----GGGATGACACTTGG---TGTCACGATTTTTGGGACGA 1318
BSNT_04879___ 1188 TTCATCCAGCCAATTCTTCCGTTCTATCGGCGGAACATTCGGCATTACC- 1236
|||| |.||||| ||.|||||| |.||| .|||.|
BPUM_1766 1319 TTCA---AACCAAT------GTCCTATCG-------AATCG--CTTAGCA 1350
BSNT_04879___ 1237 -ATGCTGGGAGCCGTAATGAATGCGAGATCAGGAAATCTATTAACAGATA 1285
||||....|| ||.|||||| ||| |..||.||..| |
BPUM_1766 1351 GATGCCTTTAG-CGGAATGAA---------AGG-AGCCTCTTCTC----A 1385
BSNT_04879___ 1286 AATTG--GTTCCATATTTAGACTCTCTTCCGGCACAGGCAAGCTCGTTTG 1333
|||.| |.|||| ||||| |.|||.
BPUM_1766 1386 AATAGGCGATCCA-------------------------CAAGC-CATTTT 1409
BSNT_04879___ 1334 CCGCCCAGCTAAAGGGTATGATTGATACAAATCCGCAAGGGCTGCTGCAA 1383
|| ||| |||| |||
BPUM_1766 1410 CC---------AAG----------------------AAGG-----TGC-- 1421
BSNT_04879___ 1384 TCACTGTTC----AGTCCGGACGCGGTC---------AAACAA----ATC 1416
|.|||| |.||| ||| |||.|| |||
BPUM_1766 1422 ---CCGTTCACAAATTCC-------GTCTGATATTTTAAATAAAGTCATC 1461
BSNT_04879___ 1417 CCTGCGGCTTTCTCATCCCA---TATT--GTGCCGATTTTAAAAACATCG 1461
..|||| .|.||| || |||| ||.|..||||
BPUM_1766 1462 GATGCG---ATGTCA---CAAAGTATTACGTACGTATTT----------- 1494
BSNT_04879___ 1462 TTGATGG----ATTCGCT-----CC--ACAGCGTGTTTTA-TACGGGCCT 1499
|||||.| ||||.|| || .||||| | |||||.|||
BPUM_1766 1495 TTGATTGCGTTATTCCCTATTGCCCTTGCAGCG------ATTACGGTCCT 1538
BSNT_04879___ 1500 GATCTTTAT------CGCAGTCGGAGCCGTATTCACCTTGTTCTTAAAAC 1543
| ||||| .||| ||| |||..|||
BPUM_1766 1539 G---TTTATGGGAAATGCA--CGG----GTACGCAC-------------- 1565
BSNT_04879___ 1544 CTATCAAGCTATCAAAT--AAGAAAACGGAAGACCAACAAGAAAAAGAGA 1591
.|||| ||.|||| ||||||||| ||.||
BPUM_1766 1566 --TTCAA---ATGAAATGAAAGAAAACG-------AATAA---------- 1593
BSNT_04879___ 1592 AAGCGGCAAAAGCCGTTGAATCACCTTCCCATTAA 1626
BPUM_1766 1593 ----------------------------------- 1593
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