Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04879 and BPUM_1766

See Amino acid alignment / Visit BSNT_04879 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:37
# Commandline: needle
#    -asequence dna-align/BSNT_04879___yusP.1.24716.seq
#    -bsequence dna-align/BPUM_1766.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04879___yusP-BPUM_1766.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04879___yusP-BPUM_1766.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04879___yusP
# 2: BPUM_1766
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1985
# Identity:     943/1985 (47.5%)
# Similarity:   943/1985 (47.5%)
# Gaps:         751/1985 (37.8%)
# Score: 1921.0
# 
#
#=======================================

BSNT_04879___      1 ------------------------------AT---GAAAATGAGTAAAGA     17
                                                   ||   .|||||.||.|.|||
BPUM_1766          1 ATGTTTTCTTCCTTTATATTTAAGTTGATCATAGCAAAAATAAGAAGAGA     50

BSNT_04879___     18 AGGCAAAC--------AATCAAAACGAACGTTAT-----TAAT-------     47
                     |.|.||.|        ||| .|||.|||  |.||     ||||       
BPUM_1766         51 ACGTAAGCAGGGGGTAAAT-GAAATGAA--TCATGTGGATAATGGTAAGG     97

BSNT_04879___     48 ----AACAGGCTTAATTATTGCCAT--GTTT-----------TTTT----     76
                         .||..|||   ||.|||.|||  ||||           ||||    
BPUM_1766         98 CATCCACTCGCT---TTGTTGTCATCGGTTTGCTGTTAGGAATTTTCATG    144

BSNT_04879___     77 -CAGCCCTTGACGG----TACCATTGTCGGAACGGCCATGCCGAAA--AT    119
                      ||||    ||.||    |||||||||.|.|||.||.|||  |.||  ||
BPUM_1766        145 GCAGC----GATGGATAATACCATTGTTGCAACAGCGATG--GGAAGCAT    188

BSNT_04879___    120 TGTCGGTGATCTGGGCGGTTTGAGCATGATGA-----CCTGGCTGACAAC    164
                     .||.|..|||.|||||.||||     ||||.|     |.|||.||||..|
BPUM_1766        189 CGTAGCAGATTTGGGCAGTTT-----TGATAAATTTGCTTGGGTGACGGC    233

BSNT_04879___    165 TGCATATTTGTTAACATCAACAACCATTGTTCCAATTGCCGGTAAACTGG    214
                     |.|.|||.||                         .||.||||||  |||
BPUM_1766        234 TTCTTATATG-------------------------GTGGCGGTAA--TGG    256

BSNT_04879___    215 CT--------GATTTATTGGGACGCCGCATTGTC---TATGTA-------    246
                     ||        |||||| .||.|.||     |.||   ||||||       
BPUM_1766        257 CTGGAATGCCGATTTA-CGGAAAGC-----TTTCTGATATGTATGGTCGA    300

BSNT_04879___    247 -----------TCAGGTTTGA-TTATTTTC-------ATGGCCGCTTCTG    277
                                ||.|.||.|| ||||||||       .|||    .||||
BPUM_1766        301 AAGCGTTTTTTTCTGTTTGGACTTATTTTCTTTTTAATTGG----ATCTG    346

BSNT_04879___    278 CTTTGTGCGGAATGGCCAACAACATGACGG---AATTGATTATCTTCCGT    324
                     |..|||||||.||.||  |||| |.||.||   ||.|.|||||.|.|||.
BPUM_1766        347 CGCTGTGCGGTATCGC--ACAA-ACGATGGATCAACTCATTATTTACCGA    393

BSNT_04879___    325 GGACTGCAGGGAATCGGCGGAGG----CATCATGATGCCGATGGCGATGA    370
                     |...|.||.||..|.||.||.||    |.||    |.||.||.|||.|.|
BPUM_1766        394 GCCATTCAAGGGCTTGGAGGCGGTGCCCTTC----TTCCAATCGCGTTTA    439

BSNT_04879___    371 TTGTCATCGGTGACTTGTTCACAG---GAAAACAGCGTGCTAAAT-TCCA    416
                     ...|||||..|||..|.||| |.|   |||||..||| |..|||| ||| 
BPUM_1766        440 CAATCATCTTTGATATCTTC-CCGCCTGAAAAGCGCG-GAAAAATGTCC-    486

BSNT_04879___    417 AGGTGTCTTTGGCGCAAT-TTACGGGCTGGCTT---CAGTG--ATTGGGC    460
                      |||.|.|||||.|||.| ||      |||.||   .||||  .|.||.|
BPUM_1766        487 -GGTATGTTTGGTGCAGTGTT------TGGTTTATCGAGTGTACTAGGAC    529

BSNT_04879___    461 CGCAAATCGGCGGCTGGATTGT---AGACTCGTTAAACTGGAAATGGGTT    507
                     |.|...|.|| .|||  |||.|   |||.|||.|....|||.|.||||||
BPUM_1766        530 CACTTTTAGG-AGCT--ATTATCACAGATTCGATCGGTTGGCACTGGGTT    576

BSNT_04879___    508 TTCTATATTAATCTGCCAGTCGGAATTATTGCGGTTATTTTTATTGCCAG    557
                     |||||||||||..|.|||.||||.|||.||...||..|.||.|||||.||
BPUM_1766        577 TTCTATATTAACGTACCAATCGGTATTGTTAGTGTGTTCTTGATTGCTAG    626

BSNT_04879___    558 ---------GGGATTACAGGGA---CGCCAGCA-------GACTGGGCCG    588
                              ||.||..|.||.|   ||..||||       ||||||    
BPUM_1766        627 ATACTACCAGGAATCGCTGGAACATCGGAAGCAGAAAATTGACTGG----    672

BSNT_04879___    589 ATCAACTTCGATATCGCTGGTATTTTCACAATGATTGTGGGTGTGGTCAG    638
                      |||              |||..|.|||||.|..|.||||..||.||.||
BPUM_1766        673 -TCA--------------GGTGCTATCACACTTGTCGTGGCGGTTGTGAG    707

BSNT_04879___    639 CCTCCTGCTCGC-CTTAAGCTTTGGCGGAAAAGATTATGCATGGGATTCA    687
                     |.|..||.|.|| |||.||| |||||||.|||..||||||.|||||||||
BPUM_1766        708 CTTGATGTTTGCTCTTGAGC-TTGGCGGTAAATCTTATGCGTGGGATTCA    756

BSNT_04879___    688 TGGCAGATTCTTGGGTTGTTCGC------TCTCGCACTGATCGGCATTGT    731
                     ..|||.||.||.....|.||.||      |||.|   ||.||||.|.|.|
BPUM_1766        757 GTGCAAATCCTCACACTTTTTGCTGTATTTCTTG---TGTTCGGTACTAT    803

BSNT_04879___    732 CAGCTTTA----TCATCGTAGAATCAAAAGCAAAAGAGCCAATCCTGCCA    777
                     |..|||||    |.|.|||       |||||..|.||.||.||       
BPUM_1766        804 CTTCTTTATTGTTGAGCGT-------AAAGCGGAGGAACCGAT-------    839

BSNT_04879___    778 ATGTATT----------TATTTAAAAACAGAACATTT---ACATTTCTAA    814
                        ||||          |.||||||||..|...||||   ||||.||.||
BPUM_1766        840 ---TATTTCATTTTGGATGTTTAAAAATCGTTTATTTGCGACATCTCAAA    886

BSNT_04879___    815 ACTTGATCGGC-TTCTT-TATGAGTATCGG---------TATGTTTGGCG    853
                     ..||    ||| ||||| ||||    .|||         |||..|||.||
BPUM_1766        887 TTTT----GGCGTTCTTATATG----GCGGAACATTTATTATTCTTGCCG    928

BSNT_04879___    854 CCATTACATTTGTTCCTTTCTTTATGCAGGGAATTGTCGGTGTAAG----    899
                     .|      ||..|||||.|.||..|.||||       |||||||.|    
BPUM_1766        929 TC------TTCATTCCTATTTTCGTTCAGG-------CGGTGTACGGAGA    965

BSNT_04879___    900 ---TGCGTCTGAATCGGGTACA------ATTATGACACCGATGATGATT-    939
                        ||||.|  ||    ||.||      |||.|.||.|||||||||||| 
BPUM_1766        966 ATCTGCGAC--AA----GTGCAGGATTCATTTTAACGCCGATGATGATTG   1009

BSNT_04879___    940 --TCTATGATTATCACAAGTATCATCGGCGGA------CAG---------    972
                       |||.|.|||..|   |||||.||.||.|||      |||         
BPUM_1766       1010 GGTCTGTCATTGGC---AGTATGATTGGTGGAACGATGCAGACGAAAGTG   1056

BSNT_04879___    973 -CTT------GT-TTATAAAATCGG-GAT-----TAAACCGCAAATCATT   1008
                      |||      || ||||      || |||     |.|.|      |||||
BPUM_1766       1057 CCTTTCAGACGTCTTAT------GGCGATCTCTGTTATC------TCATT   1094

BSNT_04879___   1009 ----GCAGGCATGCTGGT---------TATGGCCGGCGGATTCCTG---C   1042
                         ||.||.||||||.|         ||||.|        .||||   |
BPUM_1766       1095 TTTCGCGGGAATGCTGCTGCTTGCCAATATGTC--------ACCTGATAC   1136

BSNT_04879___   1043 TGTTAACGACATTGGATCTC---------GACACGAGCAAGCT----TGT   1079
                     .|.||  |||.||||.||.|         ||....|.||.|||    |||
BPUM_1766       1137 AGCTA--GACTTTGGCTCACCATCTTTATGATGATATCAGGCTTTGGTGT   1184

BSNT_04879___   1080 C-GCTACATCTT-----TTATGGCG---------ATTATTGGTCTGGGAA   1114
                     | |||.||.|||     ||.||.||         ||.|.||.|||     
BPUM_1766       1185 CGGCTTCAGCTTCTCCCTTCTGCCGTCAGCTTCAATGAATGATCT-----   1229

BSNT_04879___   1115 TGGGTCTTGTTA---------TGCCGATTCTGAC--ATTGGC-TTTACAG   1152
                     ||...||.||||         ||||.|.|| |||  |||  | ||||...
BPUM_1766       1230 TGCCCCTCGTTACCGAGGCAGTGCCAACTC-GACCAATT--CATTTATGA   1276

BSNT_04879___   1153 GAAAGCTTTTCGAAGGAGGA-GCTTGGAGTTGTCAC--------------   1187
                     ||...|||     .|||.|| .|||||   ||||||              
BPUM_1766       1277 GATCACTT-----GGGATGACACTTGG---TGTCACGATTTTTGGGACGA   1318

BSNT_04879___   1188 TTCATCCAGCCAATTCTTCCGTTCTATCGGCGGAACATTCGGCATTACC-   1236
                     ||||   |.|||||      ||.||||||       |.|||  .|||.| 
BPUM_1766       1319 TTCA---AACCAAT------GTCCTATCG-------AATCG--CTTAGCA   1350

BSNT_04879___   1237 -ATGCTGGGAGCCGTAATGAATGCGAGATCAGGAAATCTATTAACAGATA   1285
                      ||||....|| ||.||||||         ||| |..||.||..|    |
BPUM_1766       1351 GATGCCTTTAG-CGGAATGAA---------AGG-AGCCTCTTCTC----A   1385

BSNT_04879___   1286 AATTG--GTTCCATATTTAGACTCTCTTCCGGCACAGGCAAGCTCGTTTG   1333
                     |||.|  |.||||                         ||||| |.|||.
BPUM_1766       1386 AATAGGCGATCCA-------------------------CAAGC-CATTTT   1409

BSNT_04879___   1334 CCGCCCAGCTAAAGGGTATGATTGATACAAATCCGCAAGGGCTGCTGCAA   1383
                     ||         |||                      ||||     |||  
BPUM_1766       1410 CC---------AAG----------------------AAGG-----TGC--   1421

BSNT_04879___   1384 TCACTGTTC----AGTCCGGACGCGGTC---------AAACAA----ATC   1416
                        |.||||    |.|||       |||         |||.||    |||
BPUM_1766       1422 ---CCGTTCACAAATTCC-------GTCTGATATTTTAAATAAAGTCATC   1461

BSNT_04879___   1417 CCTGCGGCTTTCTCATCCCA---TATT--GTGCCGATTTTAAAAACATCG   1461
                     ..||||   .|.|||   ||   ||||  ||.|..||||           
BPUM_1766       1462 GATGCG---ATGTCA---CAAAGTATTACGTACGTATTT-----------   1494

BSNT_04879___   1462 TTGATGG----ATTCGCT-----CC--ACAGCGTGTTTTA-TACGGGCCT   1499
                     |||||.|    ||||.||     ||  .|||||      | |||||.|||
BPUM_1766       1495 TTGATTGCGTTATTCCCTATTGCCCTTGCAGCG------ATTACGGTCCT   1538

BSNT_04879___   1500 GATCTTTAT------CGCAGTCGGAGCCGTATTCACCTTGTTCTTAAAAC   1543
                     |   |||||      .|||  |||    |||..|||              
BPUM_1766       1539 G---TTTATGGGAAATGCA--CGG----GTACGCAC--------------   1565

BSNT_04879___   1544 CTATCAAGCTATCAAAT--AAGAAAACGGAAGACCAACAAGAAAAAGAGA   1591
                       .||||   ||.||||  |||||||||       ||.||          
BPUM_1766       1566 --TTCAA---ATGAAATGAAAGAAAACG-------AATAA----------   1593

BSNT_04879___   1592 AAGCGGCAAAAGCCGTTGAATCACCTTCCCATTAA   1626
                                                        
BPUM_1766       1593 -----------------------------------   1593


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