Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05521 and BPUM_1764
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Amino acid alignment /
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:08
# Commandline: needle
# -asequence dna-align/BSNT_05521.1.24716.seq
# -bsequence dna-align/BPUM_1764.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05521-BPUM_1764.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05521-BPUM_1764.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05521
# 2: BPUM_1764
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1897
# Identity: 935/1897 (49.3%)
# Similarity: 935/1897 (49.3%)
# Gaps: 683/1897 (36.0%)
# Score: 2009.5
#
#
#=======================================
BSNT_05521 1 ATGAG---CAAAGTATTTGAATCTAAATCTTTAATCGAAGAA----GCGA 43
||| | |||.|| .|||.|..|| |.|.||| ||||
BPUM_1764 1 ATG-GATACAAGGT---------CAAAACACTA--CCAGGAACTCCGCGA 38
BSNT_05521 44 AGAGCAGAAAAAAGCAATATGAGACGCTTGAGGAGCAGCTGAATACGCTG 93
| ||| ||| |.||.|| |.
BPUM_1764 39 A-------------CAA-ATG-GTCGATT-------------------TA 54
BSNT_05521 94 AAAAAAGCGTTTCAGGGAGTTGCAGATTTAGGCGATAATTTTAAAGGAAA 143
||||||||.||.||.||.|||||..|..|.||.|||.|.||.|..||.||
BPUM_1764 55 AAAAAAGCATTACAAGGTGTTGCCAACCTCGGTGATGACTTCACTGGGAA 104
BSNT_05521 144 AGGCGCGGACAATATTAAAGATTTTTTTCAGGGACAGGC-GGAAATCGTA 192
|||.||.||.||.||||||..|||.|.|.|.|..|.||| |||||| |||
BPUM_1764 105 AGGTGCCGATAACATTAAAAGTTTCTATAAAGAGCTGGCTGGAAAT-GTA 153
BSNT_05521 193 GACAGCTGGCTGACGCTTGTCTCTGCT-----------CAAATTGCGTTT 231
|||| || |.|.||.||| ||||..||.|||
BPUM_1764 154 GACA------TG-----TTTATCAGCTTCATCGATAAGCAAAAAGCCTTT 192
BSNT_05521 232 --TTAAATGGCATTTCAGGAGATATTA-AAGAT-CAAGAACTGAAT---- 273
|.|| ||..||||.|| ||.|.|| |.||| || |||| |
BPUM_1764 193 CATGAA--GGTGTTTCTGG-GACACTAGATGATACA--AACT---TTGGC 234
BSNT_05521 274 ---GATTCATATGTGGAA----ACTTCTTTTTTGGATCATGA-GCTGCCC 315
|||.|.|.|||.||| || |||||.|| || | ||||..|
BPUM_1764 235 GGCGATACCTTTGTAGAAGAACAC----TTTTTAGA-CA--ACGCTGTAC 277
BSNT_05521 316 A-ATGGAGACCTGAAAGCCTCAGAGATTGTCTCCGCCCA--------TAA 356
| |||| ||.|||.|.|| |||.| |||
BPUM_1764 278 ATATGG----------GCATCAAAAAT-------GCCAAAAGCATTGTAA 310
BSNT_05521 357 AG------AAGAAATCGATT----CTATTTTGTC-AGGCATCAGCGATAT 395
|| ||.||..||.|| |.||||| || ||.||||..|||..|
BPUM_1764 311 AGGATCAAAAAAAGGCGCTTAAAACCATTTT-TCAAGACATCGACGACCT 359
BSNT_05521 396 TATTGACCT----CGACATGTAT-----------ACGCTTGACGACTA-- 428
||| |.|.|.|||| ||..||||.||..|
BPUM_1764 360 ------CCTTTCACTAGAAGTATTTGATAGTCAAACCTTTGATGAAAAAA 403
BSNT_05521 429 -TGCAGAT----AAGATGGGCGATGCCCAAAAAATCAGAC-GTGACACGA 472
||||||| ||||.|.||| ||||| |||| || |.|.||
BPUM_1764 404 TTGCAGATGCGGAAGACGAGCG-------AAAAA--AGACAGT-AAAAGA 443
BSNT_05521 473 TC--ACAGCTGTCGATAAGCTTGATGAATCCCTGACAACTGAATATCAAA 520
|| |.|| |||||| ||||||
BPUM_1764 444 TCTAAGAG---------AGCTTG---------------------ATCAAA 463
BSNT_05521 521 ATTTA------GAAT---CTCTG---GACAACGCAGTGCTCACCA----- 553
||||| |||| ||.|| || ||||.|| ||.||
BPUM_1764 464 ATTTAAAAGATGAATATGCTTTGTCAGA-AACGGAG----CAGCAAGCTA 508
BSNT_05521 554 -AAT---ATTCCGTTC-------TCATGCAGGCCACCAGCAATG--GGAA 590
||| ||| ||.| |.|||.|.||||| .|||| ||||
BPUM_1764 509 CAATGGCATT--GTACGCAGAAATGATGAATGCCAC---AAATGATGGAA 553
BSNT_05521 591 GAGCG-CTTCTCCTATGTACTATGACAAAAAAGCCT-TCCACAGCAAT-- 636
.|||| .||||||.|||.|.|.||||||.|||||.| ||.| |||
BPUM_1764 554 AAGCGATTTCTCCAATGAATTTTGACAAGAAAGCGTATCAA----AATAG 599
BSNT_05521 637 -GAAGTCTAC------AAAAGCGTCATTGAAGTAGAAAATCAAGGAACAA 679
|||.||||| |||||||..|||||| ||| |||
BPUM_1764 600 CGAAATCTACAAAGCAAAAAGCGATATTGAA----------AAG---CAA 636
BSNT_05521 680 CCT-----ATATC----GATGCAAAAACCCAGCAAGCA-GAAGC----AA 715
.|| ||||| .||..||||| .|.||| || ||||| .|
BPUM_1764 637 ACTTCCGAATATCTCAACATTAAAAAA--GAACAA-CAGGAAGCCCGAGA 683
BSNT_05521 716 GACGGCTCCAGGAAAAAGCCGAGGAAGAAGCA--AACAAA----CCGTGG 759
||..|| |||| ||..|||||||| ..|||| ||.|||
BPUM_1764 684 GATTGC-------AAAA---GAACAAGAAGCACTCGCAAATCGTCCTTGG 723
BSNT_05521 760 TACGAAAAAAC-----ATGGGATGGAGTTTGCAACTTTACTGGA-GAAGT 803
||.||||||.| || .||||.| |.|| |.|..||.| |||.|
BPUM_1764 724 TATGAAAAAGCCCTCGAT--TATGGCG---GGAA-TATCGTGAATGAACT 767
BSNT_05521 804 CACTGGCTATTATGATTATAAAAG---AGCAACCGAAGGCGTTGATCCGG 850
.||.|||....|.|||...|||.| .||||| |||||||||.|||.
BPUM_1764 768 GACAGGCGTGAACGATGCAAAACGCGCCGCAAC---AGGCGTTGACCCGA 814
BSNT_05521 851 TTACCGGAGAAAAACTCTCCACCGCAG---AGCGTGTGACAGCAGGAGCT 897
|.||.||.|||.|||| .||||||| ||||.||..|.|||||.|..
BPUM_1764 815 TCACAGGCGAAGAACT---TACCGCAGGACAGCGCGTCGCCGCAGGCGGC 861
BSNT_05521 898 ATGGCCGCTGCCGGATTCATACCAGTCGTCGGCTGGGCAGGCCGGGCCTT 947
|||||.||.||.||||..||.|||.||||||||||||||||.||....||
BPUM_1764 862 ATGGCAGCCGCAGGATATATCCCAATCGTCGGCTGGGCAGGGCGCATTTT 911
BSNT_05521 948 CAAAGGCGGAAAAGCCATCTACAAAA------------------CCGGA- 978
||||||.|||||||||.||||.|||| |||.|
BPUM_1764 912 CAAAGGGGGAAAAGCCGTCTATAAAACGACCCAAGCCACCTCAGCCGCAG 961
BSNT_05521 979 --AAAGCAGCT---------------ATCGCGGCTGAACACGCTTTAGAC 1011
||||||| | ||||| ||.|..||||.|||
BPUM_1764 962 TCAAAGCAG-TCGACATTTACAAGACATCGC-----AAAAATCTTTTGAC 1005
BSNT_05521 1012 GCCTACAAAACAGGCAAATCCTTAGACATTCTCAAAATGACAGAAATGGG 1061
||||..|||||| ||.||||| .||
BPUM_1764 1006 GCCTTAAAAACA-----------------TCGCAAAA----------AGG 1028
BSNT_05521 1062 TGCATACGGCCTTGTAGCGTCA--AACGGATTCTCAGAAGCCGTCACAGG 1109
|..|||.||.|| .|.||.|| |||||.|||...|||||..|||||||
BPUM_1764 1029 TTTATATGGTCT--CACCGCCACCAACGGCTTCAGCGAAGCAATCACAGG 1076
BSNT_05521 1110 CCGGGATATGTTCGGAAACAAAGTGTCTGAGGAGAAGCGGAAAACGGGT- 1158
|||.||.|||||.||||||||..|.||..||||..|||.|.||.|..||
BPUM_1764 1077 CCGAGACATGTTTGGAAACAAGATCTCGAAGGAACAGCAGGAAGCCAGTA 1126
BSNT_05521 1159 --------GCGCTGGAAGCGGCATTGAGCTT-----GGTTGGAGCCGG-- 1193
|||||| ||.|| |||| |.||||.|| |
BPUM_1764 1127 TGAATGCCGCGCTG-----GGAAT---GCTTTTACCGTTTGGGGC--GAA 1166
BSNT_05521 1194 -TGCATT-GGCGAAACAT----ATT---------GATAAAG--------G 1220
.||.|| ||.|.||.|| ||| ||.|||| .
BPUM_1764 1167 AGGCTTTCGGGGGAAGATGGGAATTATGGGTAGGGAAAAAGTTAAGTACT 1216
BSNT_05521 1221 CATCCCGCTTGCAA---CCCAT--------------TCAAAATTCCAAAA 1253
||||..||||..|| |..|| .|||..||||||..
BPUM_1764 1217 CATCTAGCTTAGAAGATCATATAAGAAAAGTTGATACCAATGTTCCAAGG 1266
BSNT_05521 1254 AGCA--------------------AACAAA----ACACTA-GAAAAA--- 1275
||.| |||||| |...|| ||||||
BPUM_1764 1267 AGAAGAGGAATTGGTGGGGCGCATAACAAAGATGAATTTATGAAAAATGA 1316
BSNT_05521 1276 -GTAAAACAATTCAAAGTCCCAACAAACGTCCGCGTATACGCAGAACGC- 1323
|||||...|||.||.|| .||.|| |||..|.||
BPUM_1764 1317 TGTAAATATATTAAATGT--TAAGAA--------------GCATGATGCT 1350
BSNT_05521 1324 ---CCAG------------TAACT--CCGGAGG-----GCTTTACATTCG 1351
|||| ||||| || |.| .|||||.||.|.
BPUM_1764 1351 TTGCCAGGAGTGGAAAAAATAACTTACC--AAGTTCCTTCTTTAGATGCT 1398
BSNT_05521 1352 GAATCCCGACAGTACGT-------GTAGATG--TGGAAAAG--------- 1383
.|| |||| || .|.|||| .||.||||
BPUM_1764 1399 AAA-----ACAG---GTCAAAAAATTGGATGGAAGGCAAAGCCATTTGAT 1440
BSNT_05521 1384 ACGGCTGTTAAGGATCTTGGG---ATT----GTGAAGATGGTAGTGATGG 1426
|...|||||.|.||||.|..| ||| .|||||||..||.|.|..|
BPUM_1764 1441 AAAACTGTTTATGATCCTAAGTTAATTTCTGATGAAGATTTTATTAAACG 1490
BSNT_05521 1427 CGGTCGTAAGGGAAGCTCT-CATAGTCCTAACAT-TTCTAAA-------- 1466
.|| ||..||||||.| .|||.|.|| | |||.|||
BPUM_1764 1491 AGG----AAAAGAAGCTGTAAATAATGCT----TCTTCAAAAGGTGTTTT 1532
BSNT_05521 1467 --------AAT-----------------CACG--ATAAAGTAG------- 1482
||| ||.| |||||.|.|
BPUM_1764 1533 AGGGAGAGAATGGGAAGGTTATGATGGACAAGGTATAAAATGGAGAGGTT 1582
BSNT_05521 1482 ----------------------------------------------- 1482
BPUM_1764 1583 ATACAGATAAGGATGGGGCAGTGACCTCGTTTTATCCTGAATTATAG 1629
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Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.