Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04407 and BPUM_1753
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:57
# Commandline: needle
# -asequence dna-align/BSNT_04407___msmE.1.24716.seq
# -bsequence dna-align/BPUM_1753___msmE.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04407___msmE-BPUM_1753___msmE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04407___msmE-BPUM_1753___msmE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04407___msmE
# 2: BPUM_1753___msmE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1453
# Identity: 820/1453 (56.4%)
# Similarity: 820/1453 (56.4%)
# Gaps: 368/1453 (25.3%)
# Score: 2004.5
#
#
#=======================================
BSNT_04407___ 1 ----ATGAAA-----------CACACT------TTTGTTTTA---TTTCT 26
||.||| |..||| |||||.||| .||||
BPUM_1753___m 1 ATGAATAAAAAAATCATGCTGCTGACTGCGGTCTTTGTCTTAACCATTCT 50
BSNT_04407___ 27 CTCTCTTATTCTGCTTGTTCTGCCCG--------GGT--GTTC--AGCAG 64
||..||||||||| | ||| ||.| ||||.
BPUM_1753___m 51 -----TTTGTCTGCTTGT-------GGCAATAATGGTACGTCCGAAGCAA 88
BSNT_04407___ 65 A-GAAAAGCTCA-GCAGATACCGCAAAAAAGACGTTAACCATTTATTCTA 112
| |.||||.||| .|.|| ||| |.|.|||.|
BPUM_1753___m 89 ACGGAAAGGTCACCCTGA---CGC-----------------TCTTTTCGA 118
BSNT_04407___ 113 CAATG-TCAACCGACAGTGAAAGAGATACGTTCAGAAAACTGG-----CG 156
|.||| .|||..| |.|.||||||.|..|||| .|||.| || ||
BPUM_1753___m 119 CGATGAGCAATAG-CGGGGAAAGAAAAGCGTT-TGAAGA--GGTGATTCG 164
BSNT_04407___ 157 GCAGCATTCGAAAAGGAACA--CAGTGACAT-------TC-ATGTCAGCC 196
|||.||.|||||.||.|| | |||| || |||.||
BPUM_1753___m 165 --AGCGTTTGAAAAAGAGCATCC----ACATCTTCGAATCGATGCCA--- 205
BSNT_04407___ 197 TTCATTTCCCAGGCAATGACTATGAAAATATGATGCGTGTCAGAATGGCG 246
|.|||||||||||...|||||||.|||.|||.|||||||.|||||.|
BPUM_1753___m 206 ---ACTTCCCAGGCAACAGCTATGAAGATACGATCCGTGTCAAAATGGGG 252
BSNT_04407___ 247 GCCAATGATTTGCCTGATCTATTCGATACACATGGCTGGGGGAAAATCAG 296
||.||||||.||||.|||||.||.||.|||||||||||||..|||.||.|
BPUM_1753___m 253 GCAAATGATATGCCAGATCTGTTTGACACACATGGCTGGGCAAAACTCCG 302
BSNT_04407___ 297 GTACGGAGAATATACAGCGGATCTCCGGGATATGGAATGGACTCAAGATC 346
.||..|.||.|||...||.|||.|....||.|||.|.|||....||.|.|
BPUM_1753___m 303 CTATAGCGAGTATGTCGCTGATTTAAAAGAGATGAATTGGGTGAAAAAAC 352
BSNT_04407___ 347 TTGATCC----------CAA--TTTAAACAGCATCCTCAAAAATAAAAGC 384
||||||| ||| ||||| ||.| |.||.||
BPUM_1753___m 353 TTGATCCTTCACTCGATCAAATTTTAA--AGGA----CCAAGAT------ 390
BSNT_04407___ 385 GGAAAGGTGTATGCCTATCCGATCAATCAGGCAAAAGAC--GGTCTGGCG 432
||.||.||.||.||.|||||..|.|||||.||||||||| ||| |.||
BPUM_1753___m 391 GGCAAAGTATACGCGTATCCCCTAAATCAAGCAAAAGACGGGGT-TAGC- 438
BSNT_04407___ 433 TATAACCGCAATATTTT---GGACCGTTACGGCATT---GCTCC--GCCG 474
|.|||...||||.|.|| |||| ||.|.|||| |.||| |
BPUM_1753___m 439 TTTAATGCCAATCTATTAAAGGAC---TATGACATTGAGGTTCCTAG--- 482
BSNT_04407___ 475 GAAACCATGGATGACTTTATCAAA---GCACTG-AGAACGATTAAAGAAA 520
|||..|.|||||.||| ||| ||..|| .||.|| ||||.||||
BPUM_1753___m 483 --AACACTCGATGAATTT---AAATCGGCTTTGCTGACCG-TTAAGGAAA 526
BSNT_04407___ 521 AGAGCAAGGGA-AGCATTGTTCCCTTCTGGTTTGCCGGCTATGACAAAAG 569
|||||||.||| || .||||.||..|||||.|..|.||....|||||
BPUM_1753___m 527 AGAGCAAAGGAGAG-GTTGTGCCGCTCTGGATACCAGGAGGAGACAA--- 572
BSNT_04407___ 570 CTCA---TTCGCTCAA-TATTACGACCAATTCGCTACACCTCTTCTCATC 615
|||| .||||.||| |.|| .||..||.||||.||||||.|..|.|||
BPUM_1753___m 573 CTCAAATATCGCCCAAGTCTT-TGATGAACTCGCCACACCTTTATTGATC 621
BSNT_04407___ 616 ACAGACCCTGCCCAT-AAT--GAAAAAAAAC---AGCTCATCAACGGCAC 659
||.|..||...|||| ||| |.||||.||| || |||||..|
BPUM_1753___m 622 ACGGGTCCAAACCATCAATACGGAAAAGAACTTGAG------AACGGATC 665
BSNT_04407___ 660 TTTTCAATGG------AATAAATTTACTTGCTTATCAAAAATCCTCAAAC 703
.|||.|.||| .|||.| ..||||| ||.|..||.|.||..
BPUM_1753___m 666 ATTTGATTGGTCTCTCTATACA-CCACTTG-----CACAGTTCATGAAGG 709
BSNT_04407___ 704 AAATGCAGAAAGAAAAATTGATCAATATC-----------GACGCCGTCA 742
|..||.|| ||||||.||| ||.|.|.|||
BPUM_1753___m 710 AGCTGAAG-----------GATCAAGATCTTTTAAACAAAGATGTCCTCA 748
BSNT_04407___ 743 CGGCAAAAAAATCAC-AGCTCATCGAATTAATGGCCCAAAACAAAATCGC 791
|.||||||...||.| |||.|.| |||.|||||||.|||||||||||.||
BPUM_1753___m 749 CAGCAAAACTTTCTCAAGCACCT-GAACTAATGGCACAAAACAAAATAGC 797
BSNT_04407___ 792 CTTTACAATGCAAGGCGGCACCCTCGGCCAAGACGTT------GCCCAGA 835
||| ||||.|.|.| .||.||| |.||.||
BPUM_1753___m 798 CTT---------------CACCTTTGTC--GGAGGTTCTTTAGGACCTGA 830
BSNT_04407___ 836 -----------TCAACTCTAAC-GTCGAGGTCGGCATTATCCCGACACCT 873
|||| ||.|.| |||.|.||.|||| |.|..|||
BPUM_1753___m 831 GGCGACAGAACTCAA-TCCATCGGTCAAAGTAGGCA------CAATGCCT 873
BSNT_04407___ 874 G--CCATC----CATCCCGGTGATGACCCGATATGGATCGGCGGTGAACG 917
| ||||| |||...||.|||.|.|..|..|||||.||.||.|||||
BPUM_1753___m 874 GTTCCATCTATTCATAAAGGAGATAAGCAAAGCTGGATTGGAGGAGAACG 923
BSNT_04407___ 918 --CTACA--CGCTTGCAGCATGGAAAGATTCGTCTCAA----TTAAAAGA 959
.|||| |||| ||.||||||.|.|| ||| ||||||||
BPUM_1753___m 924 GTTTACAGTCGCT----GCCTGGAAAAACTC----CAAACATTTAAAAGA 965
BSNT_04407___ 960 GGCAAAAGAATTTATCGCATTTATGGCCCGC----CCGGCCAATGCCAAA 1005
.||||||.|.||.||||..||| |.||| ||.|..|||||.|||
BPUM_1753___m 966 AGCAAAACAGTTCATCGATTTT----CTCGCAAAGCCTGAAAATGCGAAA 1011
BSNT_04407___ 1006 CAAATGGCTGAAG---CCACATC----GCTTCCTTCAGGGCTGACCAATG 1048
.||||.||.|||| ||.|||| ||..||||.| |.||| |
BPUM_1753___m 1012 AAAATCGCAGAAGGTACCTCATCTGAAGCAGCCTTAA------AACAA-G 1054
BSNT_04407___ 1049 TGAAAGC------TGATATTTTCTACGCAAACGATTATGAGCATTATCAA 1092
||||||| .||| |||.|.|.|..|||.||.||.||..||
BPUM_1753___m 1055 TGAAAGCGAAAAACGAT------TACTCTACCTTTTACGATCAATACGAA 1098
BSNT_04407___ 1093 GATGTCAAAGTCGAGCCTTACTTCGACCGGTTATACTTGCCAAACGGAAT 1142
.|.||.||..|.||.||.||.|||||.||...||||||.||||.||||||
BPUM_1753___m 1099 CAGGTGAAGATTGAACCGTATTTCGATCGAAAATACTTACCAAGCGGAAT 1148
BSNT_04407___ 1143 GTGGGATGTCCTGGGCACGGTTGGGCAGGAGCTCGCGGCTGACATTTT-- 1190
|||||..|||.|||..||....|||||.|| |||.|
BPUM_1753___m 1149 GTGGGCGGTCATGGCAACAACAGGGCAAGA-------------ATTATTA 1185
BSNT_04407___ 1191 ---GGCGCC-TCA----AG-ACA--TTTCGCAGAAGCTGGGAAGA-GAAT 1228
|||.|| ||| || ||| |.|||.|||||.| |||||| ||||
BPUM_1753___m 1186 GCAGGCTCCATCACACCAGAACAATTATCGAAGAAGAT-GGAAGAGGAAT 1234
BSNT_04407___ 1229 ATAAACGACTCCGGGAGCAATCGGAAACACAGGGAGCTGAAAACAATGAG 1278
||||.|| ||.||| |||||||| ||
BPUM_1753___m 1235 ATAAGCG-------------TCTGAA-------------AAAACAAT-AG 1257
BSNT_04407___ 1279 TGA 1281
BPUM_1753___m 1257 --- 1257
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