Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02996 and BPUM_1712
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:32
# Commandline: needle
# -asequence dna-align/BSNT_02996.1.24716.seq
# -bsequence dna-align/BPUM_1712___ynfC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02996-BPUM_1712___ynfC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02996-BPUM_1712___ynfC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02996
# 2: BPUM_1712___ynfC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 399
# Identity: 223/399 (55.9%)
# Similarity: 223/399 (55.9%)
# Gaps: 108/399 (27.1%)
# Score: 579.5
#
#
#=======================================
BSNT_02996 1 TTGAAAAAAGTAACGATATTG---AAAGCATCCATCTTATTCTTGGCGAT 47
.||||||| ||..||.||| |||..|.|..||||||||.|.||..|
BPUM_1712___y 1 ATGAAAAA---AAATATGTTGCTAAAATTAGCTGTCTTATTCATAGCACT 47
BSNT_02996 48 TGCCAGTTTTCATTTGCTCTCAATTCCCCACGCCTTTGATATCGGT---- 93
.||.||||||||||||.|||||||.||.||..||.||.| |||
BPUM_1712___y 48 CGCAAGTTTTCATTTGTTCTCAATGCCTCATTCCGTTCA----GGTATAC 93
BSNT_02996 94 CATCATTATAAAGCCGTAGCCGACCAGCAGGAAAT-GCATGAAATGAAAG 142
||||||...||.|..||.|||||.|| || ||| .|||||.||||||.
BPUM_1712___y 94 CATCATGCAAAGGTGGTTGCCGATCA--AG--AATCACATGAGATGAAAA 139
BSNT_02996 143 CCGGCCAA--AATGCTGATGATGAGAAGAAATCCATCACA---------- 180
.||..||| |||| |..|||||.|||||| |.|..|||
BPUM_1712___y 140 TCGCTCAAACAATG--GGCGATGAAAAGAAA-CAAAAACATGTGAGCGCA 186
BSNT_02996 181 ------GGGGCATTTACACTGACCGCTTTATGGGCAATGGCTGTTCTGCT 224
|..|||||||||.| ||.|| |.||| |.||||.||
BPUM_1712___y 187 GTATTTGCCGCATTTACAGT-ACTGC-TGATG---ATTGGCAGT------ 225
BSNT_02996 225 GCTGACCGCTGAAAGCAAAAGTACGGGAT----AC---TCCCGCAGAC-- 265
.||||.||| |||| || ||.|.||.||
BPUM_1712___y 226 -ATGACAGCT---------------GGATTTGCACGCATCACTCATACTG 259
BSNT_02996 266 ------GTCAGCGGAAAAA-AAGCTTTATACTGGCCAAATTTTATCAATC 308
.|.|.|||||||| ||||.|| ||||.||....||.||||||||
BPUM_1712___y 260 ATCAATATGACCGGAAAAAGAAGCATT-TACTTGCAGTGTTCTATCAATC 308
BSNT_02996 309 GTCTTATTTCGGCAAACT---TCATGTTCAACATCACCCGATTATGTAA 354
.|||||||||.| ||| ||.||||.||
BPUM_1712___y 309 TTCTTATTTCCG---ACTATCTCGTGTTTAA------------------ 336
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