Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02978 and BPUM_1699

See Amino acid alignment / Visit BSNT_02978 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:30
# Commandline: needle
#    -asequence dna-align/BSNT_02978___citB.1.24716.seq
#    -bsequence dna-align/BPUM_1699___citB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02978___citB-BPUM_1699___citB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02978___citB-BPUM_1699___citB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02978___citB
# 2: BPUM_1699___citB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2771
# Identity:    2158/2771 (77.9%)
# Similarity:  2158/2771 (77.9%)
# Gaps:          82/2771 ( 3.0%)
# Score: 8368.5
# 
#
#=======================================

BSNT_02978___      1 ATGGCAAACGAGCAAAAAACTGCAGCAA----------AAGACGTTTTCC     40
                     |||.|          .||||.|||||||          ||||||.|||.|
BPUM_1699___c      1 ATGTC----------GAAACAGCAGCAAGTCGCTAAACAAGACGCTTTTC     40

BSNT_02978___     41 AAGCGAGAAAAACGTTTACTACAAATGGGAAAACATATCATTACTACTCT     90
                     ||.|.||||||||||||.|.||||||||||||||.|||||.||.||.||.
BPUM_1699___c     41 AATCTAGAAAAACGTTTTCGACAAATGGGAAAACGTATCACTATTATTCG     90

BSNT_02978___     91 TTAAAAGCGTTAGAAGATTC-AGGTATAGGAAAGGTTTCGAAGCTTCCTT    139
                     |||.||||..||| |||..| |||.||.|||||.|||||.|||||.||||
BPUM_1699___c     91 TTAGAAGCACTAG-AGAAACAAGGAATTGGAAATGTTTCTAAGCTGCCTT    139

BSNT_02978___    140 ATTCCATCAAAGTTCTTTTAGAATCAGTATTGCGTCAAGTTGACGGCTTC    189
                     |||||||.||.||.||||||||||||||..|.||.|||||.|||||....
BPUM_1699___c    140 ATTCCATTAAGGTACTTTTAGAATCAGTGCTTCGCCAAGTAGACGGTAGA    189

BSNT_02978___    190 GTTATCAAAAAAGAACACGTGGAAAATTTGGCAAAATGGGGAACTGCCGA    239
                     ||.||||||||.||||||||.|||||.|||||||||||||||||||||||
BPUM_1699___c    190 GTGATCAAAAAGGAACACGTTGAAAACTTGGCAAAATGGGGAACTGCCGA    239

BSNT_02978___    240 ATTAAAGGATATCGACGTTCCGTTCAAACCGTCTCGAGTTATTTTACAAG    289
                     ..|.||.||.|||||.|||||.||||||||.|||||.|||||||||||||
BPUM_1699___c    240 GGTCAAAGAAATCGATGTTCCATTCAAACCTTCTCGTGTTATTTTACAAG    289

BSNT_02978___    290 ACTTCACAGGGGTTCCGGCAGTAGTAGATCTGGCTTCACTGCGTAAAGCA    339
                     |||||||.||.||.||.||.||.||.||.||.|||||..|..|.||||||
BPUM_1699___c    290 ACTTCACGGGTGTACCAGCCGTCGTTGACCTTGCTTCTTTAAGAAAAGCA    339

BSNT_02978___    340 ATGGCAGCTGTCGGCGGAGATCCTGATAAAATCAACCCTGAAATTCCTGT    389
                     |||||||.|||.||.||.|||||.|||||||||||||||||||||||.||
BPUM_1699___c    340 ATGGCAGATGTAGGTGGGGATCCGGATAAAATCAACCCTGAAATTCCAGT    389

BSNT_02978___    390 TGATCTCGTTATCGACCACTCTGTACAGGTAGATAAAGCGGGTACAGAAG    439
                     |||.||.||.||.||||||||.|||||.||.||||||||.||.||.||||
BPUM_1699___c    390 TGACCTTGTCATTGACCACTCAGTACAAGTTGATAAAGCTGGAACTGAAG    439

BSNT_02978___    440 ATGCATT-AGCAGTAAATATGGACTTGGAATTCGAAAGAAATGCAGAGCG    488
                     ||||||| |.|| |.||.|||||.||.|||||||||.|.||.||||||||
BPUM_1699___c    440 ATGCATTAAACA-TTAACATGGATTTAGAATTCGAACGTAACGCAGAGCG    488

BSNT_02978___    489 CTACAAATTTTTAAGCTGGGCAAAGAAAGCGTTTAATAATTATCAGGCAG    538
                     .||.||.||..|.||||||||||||||||||||||||||||||||.||.|
BPUM_1699___c    489 TTATAACTTCCTTAGCTGGGCAAAGAAAGCGTTTAATAATTATCAAGCTG    538

BSNT_02978___    539 TGCCGCCTGCAACAGGTATTGTGCACCAGGTCAACCTTGAGTTCTTGGCA    588
                     |.||||||||||||||.|||||.|||||.||.|||.|.||||.|.|.|||
BPUM_1699___c    539 TTCCGCCTGCAACAGGAATTGTTCACCAAGTAAACTTAGAGTACCTTGCA    588

BSNT_02978___    589 AGTGTTGTCCATGCCATTGAAGAAGACGGCGAGCTTGTAACGTATCCTGA    638
                     ||||||||.|||||.|||||||||||.||||||.|..|.||.|||||.||
BPUM_1699___c    589 AGTGTTGTTCATGCGATTGAAGAAGATGGCGAGATCATCACTTATCCAGA    638

BSNT_02978___    639 TACGCTTGTCGGAACAGACTCACACACAACAATGATTAACGGTATCGGTG    688
                     |||..|.||.||.||.|||||.||.|||||.|||||.||.||.|||||.|
BPUM_1699___c    639 TACATTGGTTGGTACTGACTCTCATACAACCATGATCAATGGGATCGGCG    688

BSNT_02978___    689 TTCTCGGCTGGGGTGTCGGTGGAATTGAAGCTGAAGCGGGAATGCTTGGA    738
                     |.||.||.|||||.||.|||||.||||||||.|||||.||.|||||.||.
BPUM_1699___c    689 TACTTGGATGGGGCGTTGGTGGTATTGAAGCGGAAGCTGGTATGCTAGGT    738

BSNT_02978___    739 CAGCCTTCTTACTTCCCAGTTCCAGAGGTAATCGGCGCGAAACTTGTCGG    788
                     ||||||||.|||||||||||.|||||.||.||.||.||.|||.|.||.||
BPUM_1699___c    739 CAGCCTTCATACTTCCCAGTACCAGAAGTCATTGGTGCTAAATTAGTTGG    788

BSNT_02978___    789 CAAGCTTCCAAACGGAACAACAGCTACTGACTTGGCGTTAAAAGTAACAC    838
                     ..||||||||||||||||.||.||.||||||.|.||..|||||||.||||
BPUM_1699___c    789 AGAGCTTCCAAACGGAACGACTGCAACTGACCTTGCACTAAAAGTGACAC    838

BSNT_02978___    839 AAGTGCTGCGTGAAAAAGGCGTTGTCGGTAAATTTGTTGAATTCTTCGGA    888
                     ||||.||.||||||||||||||.||....|||||||||||||||||||||
BPUM_1699___c    839 AAGTTCTTCGTGAAAAAGGCGTAGTGAACAAATTTGTTGAATTCTTCGGA    888

BSNT_02978___    889 CCGGGAATTGCTGAACTGCCGCTTGCAGATCGCGCAACAATTGCGAATAT    938
                     ||.||..||||..|.||||||.|.||.|||||.|||||.||||||||.||
BPUM_1699___c    889 CCAGGCGTTGCACAGCTGCCGTTAGCGGATCGTGCAACGATTGCGAACAT    938

BSNT_02978___    939 GGCTCCGGAATACGGTGCTACATGCGGATTCTTCCCAGTAGATGAAGAAG    988
                     |||.||.||||||||.|||||.|||||||||||||||||||||||.||||
BPUM_1699___c    939 GGCGCCTGAATACGGGGCTACTTGCGGATTCTTCCCAGTAGATGAGGAAG    988

BSNT_02978___    989 CGCTTAACTACCTGCGCCTGACTGGCCGTGATCCTGAACATATTGATGTT   1038
                     |.|||...|||||.|||||||||||.||.|||...||.||.|||.||.|.
BPUM_1699___c    989 CTCTTGCTTACCTTCGCCTGACTGGACGCGATGAAGAGCAAATTAATATC   1038

BSNT_02978___   1039 GTTGAAGCATACT-----GCAGAAGCAATGGCTTGTTCTACACTCCAGAT   1083
                     |||||||.|||.|     |||     ||||||||.|||||.||.||||||
BPUM_1699___c   1039 GTTGAAGAATATTCTCGCGCA-----AATGGCTTATTCTATACGCCAGAT   1083

BSNT_02978___   1084 GCGGAAGACCCTCAA--TTTACTGATGTGGTTGAAATTGACCTGTCTCAA   1131
                     ||.|||||.|  |||  |||||.|||||.||.||||||||.||.||||||
BPUM_1699___c   1084 GCAGAAGAGC--CAATTTTTACGGATGTTGTGGAAATTGATCTTTCTCAA   1131

BSNT_02978___   1132 ATTGAAGCAAACTTATCGGGTCCAAAGCGTCCTCAGGATTTGATCCCGCT   1181
                     ||||||.||||||||||.||||||||||||||.||.||||||||.||.||
BPUM_1699___c   1132 ATTGAATCAAACTTATCTGGTCCAAAGCGTCCACAAGATTTGATTCCACT   1181

BSNT_02978___   1182 ATCTGCTATGCAGGAAACGTTTAAAAAGCA-ATTAGTCAGCCCTGCAGGT   1230
                     .|||...|||.|.||.||.||..|..|||| ||| |..|||||.||.|||
BPUM_1699___c   1182 TTCTAAAATGAAAGAGACTTTCCATGAGCACATT-GAAAGCCCAGCTGGT   1230

BSNT_02978___   1231 AACCAAGGATTCGGTTT----AAAT----GCTGAGGAAGAAAATAAAGAA   1272
                     ||||||||.||.||.||    ||||    ||||        .|||||.||
BPUM_1699___c   1231 AACCAAGGGTTTGGCTTAGAAAAATCAGAGCTG--------GATAAACAA   1272

BSNT_02978___   1273 ATTAAGTTTAAACTCCTTAACGGCGAAGAAACAGTTATGAAAACGGGTGC   1322
                     |||.|.|||.|.||....||.||.|||.||.|.||.|||||.||.|||||
BPUM_1699___c   1273 ATTGAATTTGATCTAGCAAATGGTGAAAAAGCTGTGATGAAGACAGGTGC   1322

BSNT_02978___   1323 GATCGCCATTGCTGCGATTACAAGCTGTACAAATACATCAAACCCATACG   1372
                     .||.||.|||||.||||||||.||||||||.||||||||.||||||||||
BPUM_1699___c   1323 AATTGCGATTGCAGCGATTACGAGCTGTACGAATACATCGAACCCATACG   1372

BSNT_02978___   1373 TTCTGATCGGCGCCGGACTGGTAGCGAAAAAAGCGGTTGAGTTAGGGCTT   1422
                     |..|.|||||.||.||.||.||.|||||.|||||...||||.|.||..|.
BPUM_1699___c   1373 TCTTAATCGGAGCAGGTCTTGTTGCGAAGAAAGCAAGTGAGCTTGGTATG   1422

BSNT_02978___   1423 AAGGTGCCTAATTACGTGAAAACGTCACTTGCACCGGGTTCTAAAGTTGT   1472
                     ||||||||.||.|||||||||||||||||.|||||.||||||||.|||||
BPUM_1699___c   1423 AAGGTGCCAAACTACGTGAAAACGTCACTAGCACCAGGTTCTAAGGTTGT   1472

BSNT_02978___   1473 TACAGGATATCTTGTGAATTCAGGCCTTCTTCCATACATGAAAGAGCTTG   1522
                     .|||||.||.||.|||||.|||||.||||||||||||.|.|.|||.||.|
BPUM_1699___c   1473 GACAGGGTACCTCGTGAACTCAGGACTTCTTCCATACTTAAGAGACCTCG   1522

BSNT_02978___   1523 GCTTTAACCTCGTTGGCTACGGTTGTACAACATGTATCGGGAACTCAGGT   1572
                     |.|||||..|||||||.||.||.|||||||||||||||||.||||||||.
BPUM_1699___c   1523 GGTTTAATATCGTTGGGTATGGCTGTACAACATGTATCGGAAACTCAGGA   1572

BSNT_02978___   1573 CCGCTTTCACCGGAAATCGAAGAAGCGGTTGCGAAAAATGATCTTCTGAT   1622
                     ||||||.|||..|||||.||.||.||.||..|..||||||||||.|||||
BPUM_1699___c   1573 CCGCTTGCACAAGAAATTGAGGATGCTGTCTCTGAAAATGATCTGCTGAT   1622

BSNT_02978___   1623 TACGTCTGTCCTTTCCGGAAACCGTAACTTTGAAGGACGTATTCACCCGC   1672
                     .||.|||||..|.||.||.|||||||||||||||||||||||.||.||||
BPUM_1699___c   1623 CACTTCTGTTTTATCAGGTAACCGTAACTTTGAAGGACGTATCCATCCGC   1672

BSNT_02978___   1673 TTGTTAAAGGCAACTATCTTGCTTCACCGCCGCTTGTTGTGGCATATGCG   1722
                     ||||.|||||.|||||.|||||.||.||.||..|.||||||||.|||||.
BPUM_1699___c   1673 TTGTGAAAGGAAACTACCTTGCATCTCCACCATTAGTTGTGGCGTATGCA   1722

BSNT_02978___   1723 CTGGCTGGAACGGTAAACA-----TTAACTTGAAAACCGATCCAATCGGT   1767
                     ||.|||||.|||||.||.|     |||||   ||||  |||||.||||||
BPUM_1699___c   1723 CTTGCTGGTACGGTCAATATCGATTTAAC---AAAA--GATCCTATCGGT   1767

BSNT_02978___   1768 GTGGGCAAGGATGGTCAAAACGTATACTTTAATGATATTTGGCCGTCAAT   1817
                     ||||.|||..|||||.|.|||||.||.||.|||||.||||||||.|||||
BPUM_1699___c   1768 GTGGACAAAAATGGTGAGAACGTTTATTTCAATGACATTTGGCCATCAAT   1817

BSNT_02978___   1818 GGACGAAATCAATGCA----CTTGTTAAGCAAACTGTTACGCCAGAGCTA   1863
                     ||||||||||||  ||    |.||..||||  ||.|||||.||.||.||.
BPUM_1699___c   1818 GGACGAAATCAA--CAGTGTCGTGAAAAGC--ACAGTTACACCTGAACTC   1863

BSNT_02978___   1864 TTCCGCAAAGAGTATGAAACAGTATTTGATGACAACAAGCGCTGGAACGA   1913
                     |||||...||||||||||||.||.|||||..||||..||||||||||.||
BPUM_1699___c   1864 TTCCGTTCAGAGTATGAAACTGTTTTTGACAACAATGAGCGCTGGAATGA   1913

BSNT_02978___   1914 AATTGAAACAACAGATGAAGCATTATATAAATGGGATAGCGAGTCAACTT   1963
                     ||||.||||.||.|||||.|||||.||.|||||||||....|.||.||.|
BPUM_1699___c   1914 AATTAAAACGACGGATGATGCATTGTACAAATGGGATGAAAATTCCACAT   1963

BSNT_02978___   1964 ACATTCAAAATCCGCCATTCTTCGAAGAAATGTCTGTTGAGCCAGGCAAG   2013
                     |||||.|.||.|||||||||||.|||.|..|.||.|||||.||.||.|||
BPUM_1699___c   1964 ACATTGATAACCCGCCATTCTTTGAAAACCTATCAGTTGAACCTGGTAAG   2013

BSNT_02978___   2014 GTTGAACCATTAAAAGGTTTGCGTGTTGTCGGTAAATTCGGCGATTCAGT   2063
                     ||||||||..|.|||||.|||||.||.||.|..||.|||||.||.||.||
BPUM_1699___c   2014 GTTGAACCGCTTAAAGGCTTGCGCGTCGTTGCCAAGTTCGGTGACTCTGT   2063

BSNT_02978___   2064 CACAACTGACCATATTTCTCCTGCGGGGGCAATCGGAAAAGATACGCCTG   2113
                     .||.|||||||||||||||||.||.||.|||||.||.|||||.||.||||
BPUM_1699___c   2064 GACGACTGACCATATTTCTCCAGCTGGAGCAATTGGTAAAGACACACCTG   2113

BSNT_02978___   2114 CCGGAAAGTATTTGCAAGAAAAAGGTGTTTCTCCTCGTGACTTTAACTCC   2163
                     |.||.||.||.||||||||||.|||.||.||.|||.|.|||||||||||.
BPUM_1699___c   2114 CGGGTAAATACTTGCAAGAAAGAGGCGTATCGCCTAGAGACTTTAACTCA   2163

BSNT_02978___   2164 TACGGTTCCCGCCGCGGAAACCATGAAGTCATGATGAGAGGAACATTTGC   2213
                     |||||.||.|||||.||.|||||..|.||||||||||||||.||.|||||
BPUM_1699___c   2164 TACGGATCTCGCCGTGGTAACCACCATGTCATGATGAGAGGTACTTTTGC   2213

BSNT_02978___   2214 AAACATTCGCATCAAAAACCAAATTGCACCGGGTACAGAAGGCGGATTTA   2263
                     ||||||.||.||.||.||||||||.|||||.||.|||||||||||||.||
BPUM_1699___c   2214 AAACATCCGTATTAAGAACCAAATCGCACCAGGAACAGAAGGCGGATATA   2263

BSNT_02978___   2264 CAACGTACTGGCCGACTGGTGAAGTAACATCCATCTATGATGCGTGCATG   2313
                     ||||.||.|||||.||||||||||||||||||||.||||||||.||||||
BPUM_1699___c   2264 CAACTTATTGGCCAACTGGTGAAGTAACATCCATTTATGATGCATGCATG   2313

BSNT_02978___   2314 AAATACAAAGAAGATAAAACTGGTCTTGTCG-TATTAGCAGGAAAAGACT   2362
                     ...||.|||||||||...||.||||||| || |.||||||||.|||||||
BPUM_1699___c   2314 CGTTATAAAGAAGATGGTACCGGTCTTG-CGATCTTAGCAGGTAAAGACT   2362

BSNT_02978___   2363 ATGGTATGGGATCTTCACGTGACTGGGCTGCAAAAGGAACAAACCTTCTC   2412
                     |.||.|||||.||||||||||||||||||||||||||||||||||||||.
BPUM_1699___c   2363 ACGGAATGGGTTCTTCACGTGACTGGGCTGCAAAAGGAACAAACCTTCTT   2412

BSNT_02978___   2413 GGCATCAGAACGGTCATTGCAGAGAGCTTCGAAAGAATTCACAGAAGCAA   2462
                     ||.||.|.|...||..|.||.||.|||||.||..|.||.||||||||.||
BPUM_1699___c   2413 GGAATTAAATTTGTTCTAGCTGAAAGCTTTGAGCGTATCCACAGAAGTAA   2462

BSNT_02978___   2463 TCTTGTATTCATGGGTGTGCTGCCGCTTCAGTTTAAACAAGGTGAAAATG   2512
                     .|||||.|||||||||||.||.||..|.|||||||||.|.||.||||.||
BPUM_1699___c   2463 CCTTGTCTTCATGGGTGTACTTCCTTTACAGTTTAAAGACGGAGAAAGTG   2512

BSNT_02978___   2513 CGGATACACTCGGCTTAACGGGTAAAGAAGTCA-TTGAGGTAGATGTTGA   2561
                     |.||.||....||..||||.||.|.|||| .|| ||||.||..|||||||
BPUM_1699___c   2513 CAGAAACTTATGGTCTAACAGGAACAGAA-ACATTTGAAGTTCATGTTGA   2561

BSNT_02978___   2562 TGAAACAGTTCGTCCTCGTGACCTTGTGACTGTAAGAGCAATCAATGAAG   2611
                     ||||||.||||||||.|||||.|||||.|||||.|.||||||..||..||
BPUM_1699___c   2562 TGAAACTGTTCGTCCACGTGATCTTGTCACTGTCAAAGCAATTGATACAG   2611

BSNT_02978___   2612 ACGGCAATGTAACAACTTTTGAAGCAGTCGTCCGCTTTGATAGTGAAGTT   2661
                     |.|||||||..|.|||.|||||||..||.||.||.||||||||||||||.
BPUM_1699___c   2612 ATGGCAATGAGAAAACATTTGAAGTGGTTGTTCGTTTTGATAGTGAAGTC   2661

BSNT_02978___   2662 GAAATTGATTACTACCGCCATGGCGGCATCCTTCAAATGGTGCTTCGTGA   2711
                     ||||||||.|||||.||.||||||||.||||||||||||||.||||||||
BPUM_1699___c   2662 GAAATTGACTACTATCGTCATGGCGGTATCCTTCAAATGGTACTTCGTGA   2711

BSNT_02978___   2712 AAAAATG--AAGCAGTCCTGA   2730
                     ||||.||  |||||  .||.|
BPUM_1699___c   2712 AAAATTGGCAAGCA--ACTAA   2730


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