Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02978 and BPUM_1699
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:30
# Commandline: needle
# -asequence dna-align/BSNT_02978___citB.1.24716.seq
# -bsequence dna-align/BPUM_1699___citB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02978___citB-BPUM_1699___citB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02978___citB-BPUM_1699___citB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02978___citB
# 2: BPUM_1699___citB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2771
# Identity: 2158/2771 (77.9%)
# Similarity: 2158/2771 (77.9%)
# Gaps: 82/2771 ( 3.0%)
# Score: 8368.5
#
#
#=======================================
BSNT_02978___ 1 ATGGCAAACGAGCAAAAAACTGCAGCAA----------AAGACGTTTTCC 40
|||.| .||||.||||||| ||||||.|||.|
BPUM_1699___c 1 ATGTC----------GAAACAGCAGCAAGTCGCTAAACAAGACGCTTTTC 40
BSNT_02978___ 41 AAGCGAGAAAAACGTTTACTACAAATGGGAAAACATATCATTACTACTCT 90
||.|.||||||||||||.|.||||||||||||||.|||||.||.||.||.
BPUM_1699___c 41 AATCTAGAAAAACGTTTTCGACAAATGGGAAAACGTATCACTATTATTCG 90
BSNT_02978___ 91 TTAAAAGCGTTAGAAGATTC-AGGTATAGGAAAGGTTTCGAAGCTTCCTT 139
|||.||||..||| |||..| |||.||.|||||.|||||.|||||.||||
BPUM_1699___c 91 TTAGAAGCACTAG-AGAAACAAGGAATTGGAAATGTTTCTAAGCTGCCTT 139
BSNT_02978___ 140 ATTCCATCAAAGTTCTTTTAGAATCAGTATTGCGTCAAGTTGACGGCTTC 189
|||||||.||.||.||||||||||||||..|.||.|||||.|||||....
BPUM_1699___c 140 ATTCCATTAAGGTACTTTTAGAATCAGTGCTTCGCCAAGTAGACGGTAGA 189
BSNT_02978___ 190 GTTATCAAAAAAGAACACGTGGAAAATTTGGCAAAATGGGGAACTGCCGA 239
||.||||||||.||||||||.|||||.|||||||||||||||||||||||
BPUM_1699___c 190 GTGATCAAAAAGGAACACGTTGAAAACTTGGCAAAATGGGGAACTGCCGA 239
BSNT_02978___ 240 ATTAAAGGATATCGACGTTCCGTTCAAACCGTCTCGAGTTATTTTACAAG 289
..|.||.||.|||||.|||||.||||||||.|||||.|||||||||||||
BPUM_1699___c 240 GGTCAAAGAAATCGATGTTCCATTCAAACCTTCTCGTGTTATTTTACAAG 289
BSNT_02978___ 290 ACTTCACAGGGGTTCCGGCAGTAGTAGATCTGGCTTCACTGCGTAAAGCA 339
|||||||.||.||.||.||.||.||.||.||.|||||..|..|.||||||
BPUM_1699___c 290 ACTTCACGGGTGTACCAGCCGTCGTTGACCTTGCTTCTTTAAGAAAAGCA 339
BSNT_02978___ 340 ATGGCAGCTGTCGGCGGAGATCCTGATAAAATCAACCCTGAAATTCCTGT 389
|||||||.|||.||.||.|||||.|||||||||||||||||||||||.||
BPUM_1699___c 340 ATGGCAGATGTAGGTGGGGATCCGGATAAAATCAACCCTGAAATTCCAGT 389
BSNT_02978___ 390 TGATCTCGTTATCGACCACTCTGTACAGGTAGATAAAGCGGGTACAGAAG 439
|||.||.||.||.||||||||.|||||.||.||||||||.||.||.||||
BPUM_1699___c 390 TGACCTTGTCATTGACCACTCAGTACAAGTTGATAAAGCTGGAACTGAAG 439
BSNT_02978___ 440 ATGCATT-AGCAGTAAATATGGACTTGGAATTCGAAAGAAATGCAGAGCG 488
||||||| |.|| |.||.|||||.||.|||||||||.|.||.||||||||
BPUM_1699___c 440 ATGCATTAAACA-TTAACATGGATTTAGAATTCGAACGTAACGCAGAGCG 488
BSNT_02978___ 489 CTACAAATTTTTAAGCTGGGCAAAGAAAGCGTTTAATAATTATCAGGCAG 538
.||.||.||..|.||||||||||||||||||||||||||||||||.||.|
BPUM_1699___c 489 TTATAACTTCCTTAGCTGGGCAAAGAAAGCGTTTAATAATTATCAAGCTG 538
BSNT_02978___ 539 TGCCGCCTGCAACAGGTATTGTGCACCAGGTCAACCTTGAGTTCTTGGCA 588
|.||||||||||||||.|||||.|||||.||.|||.|.||||.|.|.|||
BPUM_1699___c 539 TTCCGCCTGCAACAGGAATTGTTCACCAAGTAAACTTAGAGTACCTTGCA 588
BSNT_02978___ 589 AGTGTTGTCCATGCCATTGAAGAAGACGGCGAGCTTGTAACGTATCCTGA 638
||||||||.|||||.|||||||||||.||||||.|..|.||.|||||.||
BPUM_1699___c 589 AGTGTTGTTCATGCGATTGAAGAAGATGGCGAGATCATCACTTATCCAGA 638
BSNT_02978___ 639 TACGCTTGTCGGAACAGACTCACACACAACAATGATTAACGGTATCGGTG 688
|||..|.||.||.||.|||||.||.|||||.|||||.||.||.|||||.|
BPUM_1699___c 639 TACATTGGTTGGTACTGACTCTCATACAACCATGATCAATGGGATCGGCG 688
BSNT_02978___ 689 TTCTCGGCTGGGGTGTCGGTGGAATTGAAGCTGAAGCGGGAATGCTTGGA 738
|.||.||.|||||.||.|||||.||||||||.|||||.||.|||||.||.
BPUM_1699___c 689 TACTTGGATGGGGCGTTGGTGGTATTGAAGCGGAAGCTGGTATGCTAGGT 738
BSNT_02978___ 739 CAGCCTTCTTACTTCCCAGTTCCAGAGGTAATCGGCGCGAAACTTGTCGG 788
||||||||.|||||||||||.|||||.||.||.||.||.|||.|.||.||
BPUM_1699___c 739 CAGCCTTCATACTTCCCAGTACCAGAAGTCATTGGTGCTAAATTAGTTGG 788
BSNT_02978___ 789 CAAGCTTCCAAACGGAACAACAGCTACTGACTTGGCGTTAAAAGTAACAC 838
..||||||||||||||||.||.||.||||||.|.||..|||||||.||||
BPUM_1699___c 789 AGAGCTTCCAAACGGAACGACTGCAACTGACCTTGCACTAAAAGTGACAC 838
BSNT_02978___ 839 AAGTGCTGCGTGAAAAAGGCGTTGTCGGTAAATTTGTTGAATTCTTCGGA 888
||||.||.||||||||||||||.||....|||||||||||||||||||||
BPUM_1699___c 839 AAGTTCTTCGTGAAAAAGGCGTAGTGAACAAATTTGTTGAATTCTTCGGA 888
BSNT_02978___ 889 CCGGGAATTGCTGAACTGCCGCTTGCAGATCGCGCAACAATTGCGAATAT 938
||.||..||||..|.||||||.|.||.|||||.|||||.||||||||.||
BPUM_1699___c 889 CCAGGCGTTGCACAGCTGCCGTTAGCGGATCGTGCAACGATTGCGAACAT 938
BSNT_02978___ 939 GGCTCCGGAATACGGTGCTACATGCGGATTCTTCCCAGTAGATGAAGAAG 988
|||.||.||||||||.|||||.|||||||||||||||||||||||.||||
BPUM_1699___c 939 GGCGCCTGAATACGGGGCTACTTGCGGATTCTTCCCAGTAGATGAGGAAG 988
BSNT_02978___ 989 CGCTTAACTACCTGCGCCTGACTGGCCGTGATCCTGAACATATTGATGTT 1038
|.|||...|||||.|||||||||||.||.|||...||.||.|||.||.|.
BPUM_1699___c 989 CTCTTGCTTACCTTCGCCTGACTGGACGCGATGAAGAGCAAATTAATATC 1038
BSNT_02978___ 1039 GTTGAAGCATACT-----GCAGAAGCAATGGCTTGTTCTACACTCCAGAT 1083
|||||||.|||.| ||| ||||||||.|||||.||.||||||
BPUM_1699___c 1039 GTTGAAGAATATTCTCGCGCA-----AATGGCTTATTCTATACGCCAGAT 1083
BSNT_02978___ 1084 GCGGAAGACCCTCAA--TTTACTGATGTGGTTGAAATTGACCTGTCTCAA 1131
||.|||||.| ||| |||||.|||||.||.||||||||.||.||||||
BPUM_1699___c 1084 GCAGAAGAGC--CAATTTTTACGGATGTTGTGGAAATTGATCTTTCTCAA 1131
BSNT_02978___ 1132 ATTGAAGCAAACTTATCGGGTCCAAAGCGTCCTCAGGATTTGATCCCGCT 1181
||||||.||||||||||.||||||||||||||.||.||||||||.||.||
BPUM_1699___c 1132 ATTGAATCAAACTTATCTGGTCCAAAGCGTCCACAAGATTTGATTCCACT 1181
BSNT_02978___ 1182 ATCTGCTATGCAGGAAACGTTTAAAAAGCA-ATTAGTCAGCCCTGCAGGT 1230
.|||...|||.|.||.||.||..|..|||| ||| |..|||||.||.|||
BPUM_1699___c 1182 TTCTAAAATGAAAGAGACTTTCCATGAGCACATT-GAAAGCCCAGCTGGT 1230
BSNT_02978___ 1231 AACCAAGGATTCGGTTT----AAAT----GCTGAGGAAGAAAATAAAGAA 1272
||||||||.||.||.|| |||| |||| .|||||.||
BPUM_1699___c 1231 AACCAAGGGTTTGGCTTAGAAAAATCAGAGCTG--------GATAAACAA 1272
BSNT_02978___ 1273 ATTAAGTTTAAACTCCTTAACGGCGAAGAAACAGTTATGAAAACGGGTGC 1322
|||.|.|||.|.||....||.||.|||.||.|.||.|||||.||.|||||
BPUM_1699___c 1273 ATTGAATTTGATCTAGCAAATGGTGAAAAAGCTGTGATGAAGACAGGTGC 1322
BSNT_02978___ 1323 GATCGCCATTGCTGCGATTACAAGCTGTACAAATACATCAAACCCATACG 1372
.||.||.|||||.||||||||.||||||||.||||||||.||||||||||
BPUM_1699___c 1323 AATTGCGATTGCAGCGATTACGAGCTGTACGAATACATCGAACCCATACG 1372
BSNT_02978___ 1373 TTCTGATCGGCGCCGGACTGGTAGCGAAAAAAGCGGTTGAGTTAGGGCTT 1422
|..|.|||||.||.||.||.||.|||||.|||||...||||.|.||..|.
BPUM_1699___c 1373 TCTTAATCGGAGCAGGTCTTGTTGCGAAGAAAGCAAGTGAGCTTGGTATG 1422
BSNT_02978___ 1423 AAGGTGCCTAATTACGTGAAAACGTCACTTGCACCGGGTTCTAAAGTTGT 1472
||||||||.||.|||||||||||||||||.|||||.||||||||.|||||
BPUM_1699___c 1423 AAGGTGCCAAACTACGTGAAAACGTCACTAGCACCAGGTTCTAAGGTTGT 1472
BSNT_02978___ 1473 TACAGGATATCTTGTGAATTCAGGCCTTCTTCCATACATGAAAGAGCTTG 1522
.|||||.||.||.|||||.|||||.||||||||||||.|.|.|||.||.|
BPUM_1699___c 1473 GACAGGGTACCTCGTGAACTCAGGACTTCTTCCATACTTAAGAGACCTCG 1522
BSNT_02978___ 1523 GCTTTAACCTCGTTGGCTACGGTTGTACAACATGTATCGGGAACTCAGGT 1572
|.|||||..|||||||.||.||.|||||||||||||||||.||||||||.
BPUM_1699___c 1523 GGTTTAATATCGTTGGGTATGGCTGTACAACATGTATCGGAAACTCAGGA 1572
BSNT_02978___ 1573 CCGCTTTCACCGGAAATCGAAGAAGCGGTTGCGAAAAATGATCTTCTGAT 1622
||||||.|||..|||||.||.||.||.||..|..||||||||||.|||||
BPUM_1699___c 1573 CCGCTTGCACAAGAAATTGAGGATGCTGTCTCTGAAAATGATCTGCTGAT 1622
BSNT_02978___ 1623 TACGTCTGTCCTTTCCGGAAACCGTAACTTTGAAGGACGTATTCACCCGC 1672
.||.|||||..|.||.||.|||||||||||||||||||||||.||.||||
BPUM_1699___c 1623 CACTTCTGTTTTATCAGGTAACCGTAACTTTGAAGGACGTATCCATCCGC 1672
BSNT_02978___ 1673 TTGTTAAAGGCAACTATCTTGCTTCACCGCCGCTTGTTGTGGCATATGCG 1722
||||.|||||.|||||.|||||.||.||.||..|.||||||||.|||||.
BPUM_1699___c 1673 TTGTGAAAGGAAACTACCTTGCATCTCCACCATTAGTTGTGGCGTATGCA 1722
BSNT_02978___ 1723 CTGGCTGGAACGGTAAACA-----TTAACTTGAAAACCGATCCAATCGGT 1767
||.|||||.|||||.||.| ||||| |||| |||||.||||||
BPUM_1699___c 1723 CTTGCTGGTACGGTCAATATCGATTTAAC---AAAA--GATCCTATCGGT 1767
BSNT_02978___ 1768 GTGGGCAAGGATGGTCAAAACGTATACTTTAATGATATTTGGCCGTCAAT 1817
||||.|||..|||||.|.|||||.||.||.|||||.||||||||.|||||
BPUM_1699___c 1768 GTGGACAAAAATGGTGAGAACGTTTATTTCAATGACATTTGGCCATCAAT 1817
BSNT_02978___ 1818 GGACGAAATCAATGCA----CTTGTTAAGCAAACTGTTACGCCAGAGCTA 1863
|||||||||||| || |.||..|||| ||.|||||.||.||.||.
BPUM_1699___c 1818 GGACGAAATCAA--CAGTGTCGTGAAAAGC--ACAGTTACACCTGAACTC 1863
BSNT_02978___ 1864 TTCCGCAAAGAGTATGAAACAGTATTTGATGACAACAAGCGCTGGAACGA 1913
|||||...||||||||||||.||.|||||..||||..||||||||||.||
BPUM_1699___c 1864 TTCCGTTCAGAGTATGAAACTGTTTTTGACAACAATGAGCGCTGGAATGA 1913
BSNT_02978___ 1914 AATTGAAACAACAGATGAAGCATTATATAAATGGGATAGCGAGTCAACTT 1963
||||.||||.||.|||||.|||||.||.|||||||||....|.||.||.|
BPUM_1699___c 1914 AATTAAAACGACGGATGATGCATTGTACAAATGGGATGAAAATTCCACAT 1963
BSNT_02978___ 1964 ACATTCAAAATCCGCCATTCTTCGAAGAAATGTCTGTTGAGCCAGGCAAG 2013
|||||.|.||.|||||||||||.|||.|..|.||.|||||.||.||.|||
BPUM_1699___c 1964 ACATTGATAACCCGCCATTCTTTGAAAACCTATCAGTTGAACCTGGTAAG 2013
BSNT_02978___ 2014 GTTGAACCATTAAAAGGTTTGCGTGTTGTCGGTAAATTCGGCGATTCAGT 2063
||||||||..|.|||||.|||||.||.||.|..||.|||||.||.||.||
BPUM_1699___c 2014 GTTGAACCGCTTAAAGGCTTGCGCGTCGTTGCCAAGTTCGGTGACTCTGT 2063
BSNT_02978___ 2064 CACAACTGACCATATTTCTCCTGCGGGGGCAATCGGAAAAGATACGCCTG 2113
.||.|||||||||||||||||.||.||.|||||.||.|||||.||.||||
BPUM_1699___c 2064 GACGACTGACCATATTTCTCCAGCTGGAGCAATTGGTAAAGACACACCTG 2113
BSNT_02978___ 2114 CCGGAAAGTATTTGCAAGAAAAAGGTGTTTCTCCTCGTGACTTTAACTCC 2163
|.||.||.||.||||||||||.|||.||.||.|||.|.|||||||||||.
BPUM_1699___c 2114 CGGGTAAATACTTGCAAGAAAGAGGCGTATCGCCTAGAGACTTTAACTCA 2163
BSNT_02978___ 2164 TACGGTTCCCGCCGCGGAAACCATGAAGTCATGATGAGAGGAACATTTGC 2213
|||||.||.|||||.||.|||||..|.||||||||||||||.||.|||||
BPUM_1699___c 2164 TACGGATCTCGCCGTGGTAACCACCATGTCATGATGAGAGGTACTTTTGC 2213
BSNT_02978___ 2214 AAACATTCGCATCAAAAACCAAATTGCACCGGGTACAGAAGGCGGATTTA 2263
||||||.||.||.||.||||||||.|||||.||.|||||||||||||.||
BPUM_1699___c 2214 AAACATCCGTATTAAGAACCAAATCGCACCAGGAACAGAAGGCGGATATA 2263
BSNT_02978___ 2264 CAACGTACTGGCCGACTGGTGAAGTAACATCCATCTATGATGCGTGCATG 2313
||||.||.|||||.||||||||||||||||||||.||||||||.||||||
BPUM_1699___c 2264 CAACTTATTGGCCAACTGGTGAAGTAACATCCATTTATGATGCATGCATG 2313
BSNT_02978___ 2314 AAATACAAAGAAGATAAAACTGGTCTTGTCG-TATTAGCAGGAAAAGACT 2362
...||.|||||||||...||.||||||| || |.||||||||.|||||||
BPUM_1699___c 2314 CGTTATAAAGAAGATGGTACCGGTCTTG-CGATCTTAGCAGGTAAAGACT 2362
BSNT_02978___ 2363 ATGGTATGGGATCTTCACGTGACTGGGCTGCAAAAGGAACAAACCTTCTC 2412
|.||.|||||.||||||||||||||||||||||||||||||||||||||.
BPUM_1699___c 2363 ACGGAATGGGTTCTTCACGTGACTGGGCTGCAAAAGGAACAAACCTTCTT 2412
BSNT_02978___ 2413 GGCATCAGAACGGTCATTGCAGAGAGCTTCGAAAGAATTCACAGAAGCAA 2462
||.||.|.|...||..|.||.||.|||||.||..|.||.||||||||.||
BPUM_1699___c 2413 GGAATTAAATTTGTTCTAGCTGAAAGCTTTGAGCGTATCCACAGAAGTAA 2462
BSNT_02978___ 2463 TCTTGTATTCATGGGTGTGCTGCCGCTTCAGTTTAAACAAGGTGAAAATG 2512
.|||||.|||||||||||.||.||..|.|||||||||.|.||.||||.||
BPUM_1699___c 2463 CCTTGTCTTCATGGGTGTACTTCCTTTACAGTTTAAAGACGGAGAAAGTG 2512
BSNT_02978___ 2513 CGGATACACTCGGCTTAACGGGTAAAGAAGTCA-TTGAGGTAGATGTTGA 2561
|.||.||....||..||||.||.|.|||| .|| ||||.||..|||||||
BPUM_1699___c 2513 CAGAAACTTATGGTCTAACAGGAACAGAA-ACATTTGAAGTTCATGTTGA 2561
BSNT_02978___ 2562 TGAAACAGTTCGTCCTCGTGACCTTGTGACTGTAAGAGCAATCAATGAAG 2611
||||||.||||||||.|||||.|||||.|||||.|.||||||..||..||
BPUM_1699___c 2562 TGAAACTGTTCGTCCACGTGATCTTGTCACTGTCAAAGCAATTGATACAG 2611
BSNT_02978___ 2612 ACGGCAATGTAACAACTTTTGAAGCAGTCGTCCGCTTTGATAGTGAAGTT 2661
|.|||||||..|.|||.|||||||..||.||.||.||||||||||||||.
BPUM_1699___c 2612 ATGGCAATGAGAAAACATTTGAAGTGGTTGTTCGTTTTGATAGTGAAGTC 2661
BSNT_02978___ 2662 GAAATTGATTACTACCGCCATGGCGGCATCCTTCAAATGGTGCTTCGTGA 2711
||||||||.|||||.||.||||||||.||||||||||||||.||||||||
BPUM_1699___c 2662 GAAATTGACTACTATCGTCATGGCGGTATCCTTCAAATGGTACTTCGTGA 2711
BSNT_02978___ 2712 AAAAATG--AAGCAGTCCTGA 2730
||||.|| ||||| .||.|
BPUM_1699___c 2712 AAAATTGGCAAGCA--ACTAA 2730
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