Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02967 and BPUM_1694
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:29
# Commandline: needle
# -asequence dna-align/BSNT_02967___ccdA.1.24716.seq
# -bsequence dna-align/BPUM_1694___ccdA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02967___ccdA-BPUM_1694___ccdA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02967___ccdA-BPUM_1694___ccdA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02967___ccdA
# 2: BPUM_1694___ccdA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 738
# Identity: 511/738 (69.2%)
# Similarity: 511/738 (69.2%)
# Gaps: 60/738 ( 8.1%)
# Score: 1686.0
#
#
#=======================================
BSNT_02967___ 1 ATGGGAGACGTGAATTATTTTTTGACATTCGGAGCGGGGTTTTTATCCTT 50
.||..|||..||||||..|||||..|.||.|||||.|||||..|.||.||
BPUM_1694___c 1 TTGACAGATTTGAATTTCTTTTTAGCCTTTGGAGCAGGGTTCCTTTCTTT 50
BSNT_02967___ 51 TATTTCGCCTTGCTGCCTGCCGCTTTACCCAGCTTTTTTGTCATATATTA 100
|||.||.||.|||||.|||||||||||.|||||.|||||.||.|||||||
BPUM_1694___c 51 TATCTCACCATGCTGTCTGCCGCTTTATCCAGCCTTTTTATCTTATATTA 100
BSNT_02967___ 101 CAGGGGTCAGCATGGACGATGTAAAAACTGAAAAGCTGCTGCTGCAGAA- 149
|.||.||.||.|||||.||.||.|||.||||.|||.||.||||| ||||
BPUM_1694___c 101 CGGGTGTTAGTATGGATGAAGTGAAATCTGAGAAGGTGATGCTG-AGAAG 149
BSNT_02967___ 150 AAGAAGCTTGTTTCATACTTTGTGTTTTTTGCTTGGCTTTTCAGTCATTT 199
||||||..|..||||||||||.|..|||||..||||.||.||..|.||.|
BPUM_1694___c 150 AAGAAGTCTACTTCATACTTTATTCTTTTTAGTTGGGTTCTCTATTATCT 199
BSNT_02967___ 200 TTATTGCTTTAGGCTATGGAACATCTTTTATTGGCAGCCTGTTTAGGGAT 249
|||||||..|.||||.|||.|||||.|||.||||.|...|.|||...|||
BPUM_1694___c 200 TTATTGCGATTGGCTTTGGGACATCGTTTGTTGGGAAGTTTTTTGATGAT 249
BSNT_02967___ 250 TATCACGATGCGATTCGGCAAATTGGCGCGTTGCTTATTATTTTGTTCGG 299
||.||..|.||.|||||.||..||||.||..|.|||||||||||.||.||
BPUM_1694___c 250 TACCATCAAGCCATTCGTCAGGTTGGAGCCATTCTTATTATTTTCTTTGG 299
BSNT_02967___ 300 TTTCATTACACTCGGTGTGTTCCGGCCTGAGGCT-----ATGATGAAAGA 344
.||.||.||.|||||.||.||.|.|||| | .|.|||..|||
BPUM_1694___c 300 CTTTATGACGCTCGGGGTATTTCAGCCT-----TCATTCCTCATGGGAGA 344
BSNT_02967___ 345 GCGGAGAATCCATTTTAAGCATAAACCAA---GCGGG-TTTTTAGGGTCG 390
...||||||.||.|| ||.|||||.| ||||| |||||.||||||
BPUM_1694___c 345 AAAGAGAATGCAGTT----CAAAAACCGACCTGCGGGTTTTTTTGGGTCG 390
BSNT_02967___ 391 GTCTTAATCGGAATGGCATTTGCAGCTGGATGGACACCATGTACCGGTCC 440
.|..|.||||||||||..|||||.||||||||||||||.|||||.||.||
BPUM_1694___c 391 ATTCTCATCGGAATGGGCTTTGCCGCTGGATGGACACCTTGTACAGGACC 440
BSNT_02967___ 441 GATATTAGCTGCTGTTATCACACTTGCAGGCACCAATCCGGGCTCAGCGG 490
.||.|||.||||.||||||.|.|||||..|.|.||||||.|..||.||.|
BPUM_1694___c 441 AATTTTATCTGCCGTTATCGCGCTTGCTAGTAACAATCCAGAGTCGGCTG 490
BSNT_02967___ 491 TGCCATACATGATGTTATATGTACTCGGTTTTGCGGTACCGTTTCTTTTA 540
||||.||.|||||...||||||.||.||.|||||.||.||||| |||||
BPUM_1694___c 491 TGCCTTATATGATTGCATATGTCCTTGGCTTTGCCGTCCCGTT--TTTTA 538
BSNT_02967___ 541 T--TGTCTTTTTTTATCACAAAGCTGAAGTGGATAAGGAAG---AACCAG 585
| |.|||||.||.|||||.||..||...|||||.||.||| .|.|||
BPUM_1694___c 539 TTCTATCTTTCTTCATCACGAAAATGGCATGGATCAGAAAGCGTCAGCAG 588
BSNT_02967___ 586 CTTTTCATTATGAAAGCTGGTGGCGTTTTGATGATTGTGATTGGTG---- 631
||| ||.||||||..||||||..|..|.|||||||||.|.|| |
BPUM_1694___c 589 CTT---ATCATGAAAATTGGTGGGATCATTATGATTGTGGTAGG-GTTAT 634
BSNT_02967___ 632 TGCTGTTATTCTTTAAT---------TGGATGAGCCTGATCA--TTATTT 670
||||| ||||||.|| |||||.| |.|||| ||.|.|
BPUM_1694___c 635 TGCTG---TTCTTTGATCTTCTCACATGGATTA---TCATCATGTTCTCT 678
BSNT_02967___ 671 TGCTGTCAGATCTTTTTGGAGGCTTTACTGGTTTTTGA 708
|.|| |.|||||.||.||||||||.||||||
BPUM_1694___c 679 TCCT--------TATTTGGCGGATTTACTGGCTTTTGA 708
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