Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02957 and BPUM_1687

See Amino acid alignment / Visit BSNT_02957 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:29
# Commandline: needle
#    -asequence dna-align/BSNT_02957___yneA.1.24716.seq
#    -bsequence dna-align/BPUM_1687___yneA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02957___yneA-BPUM_1687___yneA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02957___yneA-BPUM_1687___yneA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02957___yneA
# 2: BPUM_1687___yneA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 334
# Identity:     218/334 (65.3%)
# Similarity:   218/334 (65.3%)
# Gaps:          44/334 (13.2%)
# Score: 618.5
# 
#
#=======================================

BSNT_02957___      1 ATGAG---TAAAGAATCTATTATTTTTGTCGGTCTGTTCACAGTGAT-TT     46
                     |||||   .||||||||||||||||||.|.||..|.|||.||.|.|| .|
BPUM_1687___y      1 ATGAGGTTAAAAGAATCTATTATTTTTATTGGGGTATTCTCATTCATCGT     50

BSNT_02957___     47 TGAGCGCGGTTATC---CTTA-TGCTGTCATATACAAGCAGCGGCC---A     89
                     || ||....||.||   |||| |||.|||    ||||      |||   |
BPUM_1687___y     51 TG-GCATATTTCTCTCACTTATTGCAGTC----ACAA------GCCATAA     89

BSNT_02957___     90 AGAGCTTAATCAGTATGTTAAAATAGAAGTCCAGCAAGGCGACACACTTT    139
                     .||.|..|||||.|||||||||||||||||.||...|||.||.||.||||
BPUM_1687___y     90 TGATCCAAATCAATATGTTAAAATAGAAGTTCAATCAGGTGATACGCTTT    139

BSNT_02957___    140 GGTCAATTGCTGATCAGGTAGCAGATA-CAAA---AAAGATAAACAAAAA    185
                     ||....|.||||||||.|||...||.| ||||   |..|||    |||||
BPUM_1687___y    140 GGGGGTTAGCTGATCAAGTAAACGACAGCAAATCTATTGAT----AAAAA    185

BSNT_02957___    186 TGATTTTATTGAATGGGTAGCTGATAAAAATCA----ACTTCAAACCTCT    231
                     ||..||||||||.|||||..||.|..|.|||.|    .||||||    |.
BPUM_1687___y    186 TGCGTTTATTGACTGGGTCACTCAGCACAATGATCTTGCTTCAA----CA    231

BSNT_02957___    232 GATATCCAGCCGGGTGATGAGTTAGTGATCCCATTGAAAAAGAAGCATCA    281
                     ||.||||||||.|||||.....|.||.||.|||.|.|||||..|||||| 
BPUM_1687___y    232 GAAATCCAGCCTGGTGACATCCTTGTCATACCAGTCAAAAAAGAGCATC-    280

BSNT_02957___    282 GGAT--GCATATGAATTGGCAACTGTA-AGATAG    312
                      .||  |.||||.||.|.|||||.||| || |||
BPUM_1687___y    281 -CATTCGTATATCAACTTGCAACAGTACAG-TAG    312


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