Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00404 and BPUM_1681

See Amino acid alignment / Visit BSNT_00404 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:17
# Commandline: needle
#    -asequence dna-align/BSNT_00404___mpr.1.24716.seq
#    -bsequence dna-align/BPUM_1681___mpr.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00404___mpr-BPUM_1681___mpr.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00404___mpr-BPUM_1681___mpr.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00404___mpr
# 2: BPUM_1681___mpr
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1187
# Identity:     513/1187 (43.2%)
# Similarity:   513/1187 (43.2%)
# Gaps:         520/1187 (43.8%)
# Score: 911.5
# 
#
#=======================================

BSNT_00404___      1 ---ATGAAATTAGTTCCAAGATTCAGAAAACAATGGT--TCGCT----TA     41
                        ||||||        |||.|   |||   ||||.|  ||.||    ||
BPUM_1681___m      1 ATGATGAAA--------AAGGT---GAA---AATGTTACTCCCTTCTCTA     36

BSNT_00404___     42 CTTAACGGTTT------------TGTGTTTGGCTTTG-----GCAGCAGC     74
                     ||   ||.|||            ||||..|.|.||||     ||.|||.|
BPUM_1681___m     37 CT---CGTTTTTGGTGCTTTAAGTGTGCCTAGTTTTGCCCATGCGGCATC     83

BSNT_00404___     75 GGTTTCTTTTGGCGTACCGGCAAAAGCGGCAGA----GAACCCGCA----    116
                     ||.|||      .||||      .|.||.|.||    ||     ||    
BPUM_1681___m     84 GGATTC------AGTAC------TAACGTCTGATTATGA-----CATGGT    116

BSNT_00404___    117 AACTTCTGTATCGAATACCGGTAAAGAAGGTG------------------    148
                     .||||||| ||.||            ||||||                  
BPUM_1681___m    117 GACTTCTG-ATGGA------------AAGGTGATCTCTTCAAGTGATTTC    153

BSNT_00404___    149 ----ATGCTACGAAAAACCAAACGTCA---------AAAGCAGAACAGGT    185
                         |||.|.|||||..||   |.|||         ||||..||..|..|
BPUM_1681___m    154 CACAATGATTCGAAATCCC---CCTCATCCTTTGACAAAGTGGATGATCT    200

BSNT_00404___    186 TTCTGCCCCTTATGAGGGAATCGGAAAAACAAGT----AAATCGTTATAC    231
                     .|||.|..||..|| |.|||...|.|||||.|.|    ||||..|||.|.
BPUM_1681___m    201 ATCTTCTACTGTTG-GCGAAAAAGTAAAACCACTATCAAAATATTTAAAA    249

BSNT_00404___    232 GGCGGCCAAACGGA-------ACTGGAGA-------AAAACATTCAAACT    267
                     |.|...||||||.|       |.||||||       |.||||   |||.|
BPUM_1681___m    250 GACTCTCAAACGAAAGTCGTCATTGGAGACGATGGTAGAACA---AAAGT    296

BSNT_00404___    268 TTACAGCCTTCGAGCATTATCGGAACTGATGAACGCACCAGAATCTCCAG    317
                                 ||||               ||  |||.|||.|    ||
BPUM_1681___m    297 ------------AGCA---------------AA--CACAAGAGT----AG    313

BSNT_00404___    318 CACGACATCTTTTCCATATAGAGCAACCGTTCAACTG-TCAATCAAGTAT    366
                     ||           |||||     |||   |||||.|| |        |||
BPUM_1681___m    314 CA-----------CCATA-----CAA---TTCAATTGCT--------TAT    336

BSNT_00404___    367 CCCAACACT---------TCAAG-----------CACTTATGGATG----    392
                        |..|||         |||||           |||||||   ||    
BPUM_1681___m    337 ---ATTACTTTTGGCGGCTCAAGCTGCACAGGGACACTTAT---TGCCCC    380

BSNT_00404___    393 TACCGGATTTTTAATCAATCCAAATACAGTCGTCACGGCTGGACATTGTG    442
                     ||.|..|.||||.|      ||||               .|||||.||||
BPUM_1681___m    381 TAACAAAATTTTGA------CAAA---------------CGGACACTGTG    409

BSNT_00404___    443 TGTAC-AGCCAGGATCA-------------------------TGGAT--G    464
                     ||||| |..|||.||||                         ||.||  .
BPUM_1681___m    410 TGTACAATACAGCATCAAGAAGTTATAGTGCAAAAGGATCGGTGTATCCA    459

BSNT_00404___    465 GGCTTCGACGATA--ACCGCCGCGCCGGGCCGCAATGGCTCGTCATATCC    512
                     |||.|..||||||  ||.||.|.|         ||||||||..||.|...
BPUM_1681___m    460 GGCATGAACGATAGCACAGCAGTG---------AATGGCTCAGCAAAAAT    500

BSNT_00404___    513 GTACGGTACTTATTCAGGCACGATGTTTTACTCCGTCAA-AGGATGGACG    561
                     | ||||.|.|          |.||||        |.||| .||||     
BPUM_1681___m    501 G-ACGGAATT----------CTATGT--------GCCAAGCGGAT-----    526

BSNT_00404___    562 GAAAGCAAAGACA--------CCAATTATGATTACGGAGCTATTAAATTA    603
                      |.|.| ||.|||        |||| |||||||   ..|||.|  |||.|
BPUM_1681___m    527 -ATATC-AATACAGGTGCGAGCCAA-TATGATT---TTGCTGT--AATCA    568

BSNT_00404___    604 AACGGTTCTCCTGGAAACACGGTTGGCTGGTACGGCTACCGGACTACAAA    653
                                   |||||                      || |||.||
BPUM_1681___m    569 --------------AAACA----------------------GA-TACGAA    581

BSNT_00404___    654 CAGCAGCAGTCCCGTGGG---CCTTTCC--TCGTCA-GTGACA-------    690
                     ||...|||.|.|.||.||   ||.||||  .||||| ||||||       
BPUM_1681___m    582 CATTGGCAATACAGTCGGTTACCGTTCCATCCGTCAGGTGACAAACTTAA    631

BSNT_00404___    691 -----------------------GGAT-TCCCGTGTGACAAAA------C    710
                                            |||| |||.| ||||.||||      |
BPUM_1681___m    632 CTGGGACAACGATTAAAATTTCTGGATATCCAG-GTGATAAAATGAGATC    680

BSNT_00404___    711 CTTTGGCACGATGT------------------GGTCTGATACAA-AGCCG    741
                     ...|||||.|||.|                  |.||||..|||| ||..|
BPUM_1681___m    681 GACTGGCAAGATCTCGCAATGGGAGATGTCAGGTTCTGTGACAAGAGAAG    730

BSNT_00404___    742 ATTCGCTCCGCTGAAACGTATAAGCTGACCTATACAACCGATACGTACGG    791
                     ||.||..||      .||.|||       ||||||.|..|||||      
BPUM_1681___m    731 ATACGAACC------TCGCATA-------CTATACGATTGATAC------    761

BSNT_00404___    792 CTGCCAAAGCGGCTCGCCTGTTTATCGAAA-------CTACAGTGATAC-    833
                                        .||||.||.||       || |||.|||.| 
BPUM_1681___m    762 -------------------ATTTAGCGGAAATTCAGGCT-CAGCGATGCT    791

BSNT_00404___    834 AGGGCAGA--CAGCTA----TTGCCATTCACACGAACGGAGGATCGTCAT    877
                     ||..||.|  ||||.|    |||...||||   .||||.|||.|..||| 
BPUM_1681___m    792 AGATCAAAATCAGCAAATCGTTGGGGTTCA---TAACGCAGGGTATTCA-    837

BSNT_00404___    878 ATAACTTGGGAAC----AAGGGTG----ACGAACGA-------------T    906
                       |||   |||||    ||.||.|    |..|.|||             |
BPUM_1681___m    838 --AAC---GGAACGATTAATGGCGGTCCAAAAGCGACAGCTGCCTTTGTT    882

BSNT_00404___    907 GTATTCAACAA-TATTCAATATTGGGCAAATCAATAA    942
                     |.|||.|.||| |||.|||.|..|       ||||||
BPUM_1681___m    883 GAATTTATCAACTATGCAAAAGCG-------CAATAA    912


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