Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00404 and BPUM_1681
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:17
# Commandline: needle
# -asequence dna-align/BSNT_00404___mpr.1.24716.seq
# -bsequence dna-align/BPUM_1681___mpr.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00404___mpr-BPUM_1681___mpr.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00404___mpr-BPUM_1681___mpr.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00404___mpr
# 2: BPUM_1681___mpr
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1187
# Identity: 513/1187 (43.2%)
# Similarity: 513/1187 (43.2%)
# Gaps: 520/1187 (43.8%)
# Score: 911.5
#
#
#=======================================
BSNT_00404___ 1 ---ATGAAATTAGTTCCAAGATTCAGAAAACAATGGT--TCGCT----TA 41
|||||| |||.| ||| ||||.| ||.|| ||
BPUM_1681___m 1 ATGATGAAA--------AAGGT---GAA---AATGTTACTCCCTTCTCTA 36
BSNT_00404___ 42 CTTAACGGTTT------------TGTGTTTGGCTTTG-----GCAGCAGC 74
|| ||.||| ||||..|.|.|||| ||.|||.|
BPUM_1681___m 37 CT---CGTTTTTGGTGCTTTAAGTGTGCCTAGTTTTGCCCATGCGGCATC 83
BSNT_00404___ 75 GGTTTCTTTTGGCGTACCGGCAAAAGCGGCAGA----GAACCCGCA---- 116
||.||| .|||| .|.||.|.|| || ||
BPUM_1681___m 84 GGATTC------AGTAC------TAACGTCTGATTATGA-----CATGGT 116
BSNT_00404___ 117 AACTTCTGTATCGAATACCGGTAAAGAAGGTG------------------ 148
.||||||| ||.|| ||||||
BPUM_1681___m 117 GACTTCTG-ATGGA------------AAGGTGATCTCTTCAAGTGATTTC 153
BSNT_00404___ 149 ----ATGCTACGAAAAACCAAACGTCA---------AAAGCAGAACAGGT 185
|||.|.|||||..|| |.||| ||||..||..|..|
BPUM_1681___m 154 CACAATGATTCGAAATCCC---CCTCATCCTTTGACAAAGTGGATGATCT 200
BSNT_00404___ 186 TTCTGCCCCTTATGAGGGAATCGGAAAAACAAGT----AAATCGTTATAC 231
.|||.|..||..|| |.|||...|.|||||.|.| ||||..|||.|.
BPUM_1681___m 201 ATCTTCTACTGTTG-GCGAAAAAGTAAAACCACTATCAAAATATTTAAAA 249
BSNT_00404___ 232 GGCGGCCAAACGGA-------ACTGGAGA-------AAAACATTCAAACT 267
|.|...||||||.| |.|||||| |.|||| |||.|
BPUM_1681___m 250 GACTCTCAAACGAAAGTCGTCATTGGAGACGATGGTAGAACA---AAAGT 296
BSNT_00404___ 268 TTACAGCCTTCGAGCATTATCGGAACTGATGAACGCACCAGAATCTCCAG 317
|||| || |||.|||.| ||
BPUM_1681___m 297 ------------AGCA---------------AA--CACAAGAGT----AG 313
BSNT_00404___ 318 CACGACATCTTTTCCATATAGAGCAACCGTTCAACTG-TCAATCAAGTAT 366
|| ||||| ||| |||||.|| | |||
BPUM_1681___m 314 CA-----------CCATA-----CAA---TTCAATTGCT--------TAT 336
BSNT_00404___ 367 CCCAACACT---------TCAAG-----------CACTTATGGATG---- 392
|..||| ||||| ||||||| ||
BPUM_1681___m 337 ---ATTACTTTTGGCGGCTCAAGCTGCACAGGGACACTTAT---TGCCCC 380
BSNT_00404___ 393 TACCGGATTTTTAATCAATCCAAATACAGTCGTCACGGCTGGACATTGTG 442
||.|..|.||||.| |||| .|||||.||||
BPUM_1681___m 381 TAACAAAATTTTGA------CAAA---------------CGGACACTGTG 409
BSNT_00404___ 443 TGTAC-AGCCAGGATCA-------------------------TGGAT--G 464
||||| |..|||.|||| ||.|| .
BPUM_1681___m 410 TGTACAATACAGCATCAAGAAGTTATAGTGCAAAAGGATCGGTGTATCCA 459
BSNT_00404___ 465 GGCTTCGACGATA--ACCGCCGCGCCGGGCCGCAATGGCTCGTCATATCC 512
|||.|..|||||| ||.||.|.| ||||||||..||.|...
BPUM_1681___m 460 GGCATGAACGATAGCACAGCAGTG---------AATGGCTCAGCAAAAAT 500
BSNT_00404___ 513 GTACGGTACTTATTCAGGCACGATGTTTTACTCCGTCAA-AGGATGGACG 561
| ||||.|.| |.|||| |.||| .||||
BPUM_1681___m 501 G-ACGGAATT----------CTATGT--------GCCAAGCGGAT----- 526
BSNT_00404___ 562 GAAAGCAAAGACA--------CCAATTATGATTACGGAGCTATTAAATTA 603
|.|.| ||.||| |||| ||||||| ..|||.| |||.|
BPUM_1681___m 527 -ATATC-AATACAGGTGCGAGCCAA-TATGATT---TTGCTGT--AATCA 568
BSNT_00404___ 604 AACGGTTCTCCTGGAAACACGGTTGGCTGGTACGGCTACCGGACTACAAA 653
||||| || |||.||
BPUM_1681___m 569 --------------AAACA----------------------GA-TACGAA 581
BSNT_00404___ 654 CAGCAGCAGTCCCGTGGG---CCTTTCC--TCGTCA-GTGACA------- 690
||...|||.|.|.||.|| ||.|||| .||||| ||||||
BPUM_1681___m 582 CATTGGCAATACAGTCGGTTACCGTTCCATCCGTCAGGTGACAAACTTAA 631
BSNT_00404___ 691 -----------------------GGAT-TCCCGTGTGACAAAA------C 710
|||| |||.| ||||.|||| |
BPUM_1681___m 632 CTGGGACAACGATTAAAATTTCTGGATATCCAG-GTGATAAAATGAGATC 680
BSNT_00404___ 711 CTTTGGCACGATGT------------------GGTCTGATACAA-AGCCG 741
...|||||.|||.| |.||||..|||| ||..|
BPUM_1681___m 681 GACTGGCAAGATCTCGCAATGGGAGATGTCAGGTTCTGTGACAAGAGAAG 730
BSNT_00404___ 742 ATTCGCTCCGCTGAAACGTATAAGCTGACCTATACAACCGATACGTACGG 791
||.||..|| .||.||| ||||||.|..|||||
BPUM_1681___m 731 ATACGAACC------TCGCATA-------CTATACGATTGATAC------ 761
BSNT_00404___ 792 CTGCCAAAGCGGCTCGCCTGTTTATCGAAA-------CTACAGTGATAC- 833
.||||.||.|| || |||.|||.|
BPUM_1681___m 762 -------------------ATTTAGCGGAAATTCAGGCT-CAGCGATGCT 791
BSNT_00404___ 834 AGGGCAGA--CAGCTA----TTGCCATTCACACGAACGGAGGATCGTCAT 877
||..||.| ||||.| |||...|||| .||||.|||.|..|||
BPUM_1681___m 792 AGATCAAAATCAGCAAATCGTTGGGGTTCA---TAACGCAGGGTATTCA- 837
BSNT_00404___ 878 ATAACTTGGGAAC----AAGGGTG----ACGAACGA-------------T 906
||| ||||| ||.||.| |..|.||| |
BPUM_1681___m 838 --AAC---GGAACGATTAATGGCGGTCCAAAAGCGACAGCTGCCTTTGTT 882
BSNT_00404___ 907 GTATTCAACAA-TATTCAATATTGGGCAAATCAATAA 942
|.|||.|.||| |||.|||.|..| ||||||
BPUM_1681___m 883 GAATTTATCAACTATGCAAAAGCG-------CAATAA 912
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