Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03938 and BPUM_1679
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:25
# Commandline: needle
# -asequence dna-align/BSNT_03938___yrhI.1.24716.seq
# -bsequence dna-align/BPUM_1679___yrhI.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03938___yrhI-BPUM_1679___yrhI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03938___yrhI-BPUM_1679___yrhI.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03938___yrhI
# 2: BPUM_1679___yrhI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 634
# Identity: 361/634 (56.9%)
# Similarity: 361/634 (56.9%)
# Gaps: 134/634 (21.1%)
# Score: 879.5
#
#
#=======================================
BSNT_03938___ 1 ----------------AT-----------GATTATGAAAGCGTCAGTCT- 22
|| |||.|||||.||.||| ||
BPUM_1679___y 1 GTGCCAGCAGTGACTGATAAACAAGAACAGATCATGAAGGCTTCA--CTA 48
BSNT_03938___ 23 CACTT-TTTACGGAAAGGGGTTTTGACGCTACCACTATTCCTATGATAGC 71
.|||| ||||..|||.||||.|||||.|..|||||.||.||.|||||..|
BPUM_1679___y 49 GACTTATTTATTGAACGGGGATTTGATGGCACCACGATGCCGATGATTTC 98
BSNT_03938___ 72 TGAACGTGCTCATGTAGGGACAGGAACGATCTATCGTTATTTTGACAGCA 121
..||.|.||..|.||.||..|||||||.||.||.||||||||.|||||.|
BPUM_1679___y 99 AAAAAGAGCAAACGTCGGAGCAGGAACCATTTACCGTTATTTCGACAGTA 148
BSNT_03938___ 122 AAGAAACACTCGTTAACGTACTGTTTCA-AGAAAGCATCCAGCGATTTAC 170
||||..|||||||.||..|..|||.||| .|.|..|.|.|.|| .||||.
BPUM_1679___y 149 AAGAGGCACTCGTCAATATTTTGTATCAGCGTAGCCTTTCTGC-TTTTAT 197
BSNT_03938___ 171 GGAAAAACTGAAGCA-AGACGTTTCAGAATTGCCTGTC---AGAGAAG-- 214
.||||||.|||| || |.||..|.|||| || ||..|||
BPUM_1679___y 198 CGAAAAAATGAA-CACAAACAGTCCAGA--------TCCAAAGGCAAGTA 238
BSNT_03938___ 215 ---------GCTTTCACCACGTATTTTGCTGTCTCGTTCAGTTTACGAAA 255
.||||.|.||.|||||.|..||.||||||...|||||.||.
BPUM_1679___y 239 TCCGTGCGTACTTTAAGCATGTATTCTATTGCCTCGTTTTATTTACAAAG 288
BSNT_03938___ 256 GAGAGCGACTAT------GCGCTTTTTTTTCTTGAAA-CAAAAAAAGATG 298
|||| || |.|||.|.||||.|.|||| ..|.|.|.|||
BPUM_1679___y 289 GAGA------ATCCAAGCGGGCTATATTTTTTAGAAATTGATAGACGAT- 331
BSNT_03938___ 299 CTCATTACTTAAATCATACAAGCAAAAAAATGATAGAAAAT-CTGACTCA 347
|.|||||||||.|..|.||.||||| |.||||||| |.| ||
BPUM_1679___y 332 CCCATTACTTAGACGAGACGAGCAA-------AGAGAAAATGCAG---CA 371
BSNT_03938___ 348 AATGCTTGATGA-CTA---------TTTTAATAAGGGAAAAGCGGAAGGC 387
..||.|..|||| ||| |||.||.||||.||||| |||.||
BPUM_1679___y 372 TTTGTTACATGAGCTATTCCTGATCTTTGAAGAAGGAAAAAG-GGATGG- 419
BSNT_03938___ 388 GTGATTCGCAGCCTGCCCTCTAATGT-------GTTAATTGCGATTGTAT 430
|||| ||.||....||||.|.|| .||.|| |||||||||
BPUM_1679___y 420 --GATT--CATCCAAATCTCTCAGGTAGAACCATTTTAT--CGATTGTAT 463
BSNT_03938___ 431 TAGGGGCGTTTCTCAAG----ATATATCAGCTCGTTCAAACAGGTGATAT 476
|.||.||.|||.|..|| |||.|..|..||.|.||.|| |..||
BPUM_1679___y 464 TTGGTGCCTTTGTACAGCTGCATAAACAAATTCTTGCAGAC----GGAAT 509
BSNT_03938___ 477 AGAGATGGACACTGATTTAATTACT----GA-ATTGGAACAATGCTGCTG 521
||| |.||..||||.||||.|| || ||| ||.|||.|.|..||
BPUM_1679___y 510 AGA----GCCAACGATTGAATTTCTAGAGGACATT-GAGCAAAGTTTATG 554
BSNT_03938___ 522 GGACGCCATTAAGCTTCATTCATCACAAAAATAG 555
|..|||.| |.|||.| |.||||..||
BPUM_1679___y 555 GCGCGCTA-TCAGCGT--TGCATCTTAA------ 579
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