Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05148 and BPUM_1673
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:48
# Commandline: needle
# -asequence dna-align/BSNT_05148___yvfW.1.24716.seq
# -bsequence dna-align/BPUM_1673___yvfW.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05148___yvfW-BPUM_1673___yvfW.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05148___yvfW-BPUM_1673___yvfW.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05148___yvfW
# 2: BPUM_1673___yvfW
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1512
# Identity: 1010/1512 (66.8%)
# Similarity: 1010/1512 (66.8%)
# Gaps: 162/1512 (10.7%)
# Score: 3105.5
#
#
#=======================================
BSNT_05148___ 1 ATGGCGATGAAAATCGGTACTGACGCTTTTAAAGAGCGGGTATCACAGGG 50
|||...||||||||.||..|..|.||.||||||||.| |.||| |||
BPUM_1673___y 1 ATGAGTATGAAAATTGGAGCGAAGGCCTTTAAAGAAC--GAATC---GGG 45
BSNT_05148___ 51 GATTGATAATGA------ATTTATGAGAGGTGCTGTTTCGGGTGCACAGG 94
||..|||.| || |.||||||||||.||.||.||....||.||||
BPUM_1673___y 46 GAAGGATTA-GAAGATACAGTTATGAGAGGAGCAGTCTCCTCAGCGCAGG 94
BSNT_05148___ 95 AGCGTCTGCGGACG--CGGCGCCTAGAGGC-AGCAGAAGAACTGGGAAAC 141
|.||.|| |.|.| .||||.|||...|| ||| |||||.||.||.|||
BPUM_1673___y 95 AACGCCT--GTATGAAAGGCGGCTATCTGCGAGC-GAAGAGCTTGGTAAC 141
BSNT_05148___ 142 TGGGAGGAGTGGCGCTCA-TTATCAGAGGAAATCAGGCAGCATGTCCTTG 190
|||||..|||||||...| ||..| ||||||||||||||.|||
BPUM_1673___y 142 TGGGAAAAGTGGCGAGAACTTGGC-GAGGAAATCAGGCAACAT------- 183
BSNT_05148___ 191 AAAACCTTGATTTCT-----ATCTCG--GACAGCT--TGCCGAAAATGTG 231
|| .|| |||||| |||..|| |.||.|..|.|||
BPUM_1673___y 184 ---AC-------GCTGGCGCATCTCGACGACTACTTATACCAATTAAGTG 223
BSNT_05148___ 232 GCGAAAA------------GAGGCGGACATGTCTATTTCGCGGAAACAGC 269
||| |.||.||||||||||.|||.||..|||||..
BPUM_1673___y 224 ----AAAGCGTTAGTGCACGCGGAGGACATGTCTTTTTTGCAAAAACAAA 269
BSNT_05148___ 270 GGAAGAGGCGTCTTCCTATATTCGGGATGT--CATTCA-AAAGAAGAACG 316
.||||||||.||..|.|||||||...|||| || || |||.||||
BPUM_1673___y 270 AGAAGAGGCATCAGCGTATATTCAACATGTGGCA--CAGAAAAAAGA--- 314
BSNT_05148___ 317 GG--AAGAAAATTGTGAAATCTAAATCAATGGTCACAGAGGAAATCAATC 364
|| ||.||.||.||.|||||.|||||||||||||||||.|||||..|..
BPUM_1673___y 315 GGCCAAAAAGATCGTTAAATCAAAATCAATGGTCACAGAAGAAATTGAAA 364
BSNT_05148___ 365 TGAATGAGGTGCTGGAGAAGGAAGGCTGTGAAGTCGTAGAAACCGATCTC 414
|||||.|.|..||.||..||...||||||||.||.||.||||..||.||.
BPUM_1673___y 365 TGAATCAAGCCCTTGAAGAGATCGGCTGTGAGGTGGTGGAAAGTGACCTT 414
BSNT_05148___ 415 GGCGAGTATATTTTGCAGATTGATGATCACGATCCGCCGTCACATATCGT 464
|||||||||||||||||..|.||||||||.||.||.||.||||||||.||
BPUM_1673___y 415 GGCGAGTATATTTTGCAAGTAGATGATCATGAACCCCCTTCACATATTGT 464
BSNT_05148___ 465 AGCGCCCGCCCTTCATAAAAATAAAGAGCAGATACGCGATGTGTTTAAAG 514
.||.||.||.|||||.|..|..|||||.||.|||||.||.||.|||.|.|
BPUM_1673___y 465 GGCACCTGCTCTTCACATGACAAAAGAACAAATACGAGAAGTCTTTCACG 514
BSNT_05148___ 515 AAAGACT-GGACTATCAACAT-ACAGAAAAACCGGAAGAGCTGGTGATGC 562
|||..|| ||| ||| .|.|| .||||.|.|||.|||||..||..||...
BPUM_1673___y 515 AAAAGCTCGGA-TAT-GAGATGTCAGAGACACCTGAAGATATGACGAGTT 562
BSNT_05148___ 563 ATGCGCGCGCCATTCTCCGGAAAAAGTTTCTGGAAGCGGATATCGGCATT 612
.||.|.|.||.||..|.||..|||||||.||.|||||.|||||.||..|.
BPUM_1673___y 563 TTGTGAGAGCTATATTACGTGAAAAGTTCCTCGAAGCAGATATGGGTGTC 612
BSNT_05148___ 613 ACCGGCTGTAACTTCGCCATCGCTGACACGGGTTCCGTCAGCCTTGTGAC 662
|||||||||||.||.||..||||..|.||.||||||.|..||||||||||
BPUM_1673___y 613 ACCGGCTGTAATTTTGCTGTCGCCAATACAGGTTCCATTTGCCTTGTGAC 662
BSNT_05148___ 663 CAATGAAGGAAATGGACGG--CTTGTGAGCAC--CT-TGCCGAAAACACA 707
.||||||||.|||| ||| ||.|| ||| || |.|||||.|||||
BPUM_1673___y 663 AAATGAAGGGAATG--CGGATCTAGT---CACGGCTATCCCGAAGACACA 707
BSNT_05148___ 708 AATTACCGTCATGGGAATGGAGCGGATTGTCCCGTCATTTTCTGAATTTG 757
.||..||||.|||||.|||||.|||||.||.||..|..|....|||.|.|
BPUM_1673___y 708 TATCGCCGTTATGGGCATGGAACGGATGGTTCCAACGATGGAGGAACTAG 757
BSNT_05148___ 758 AAGTGCTAGTCAGCATGCTGACAAGAAGTGCTGTCGGACAGCGGCTGACA 807
|.||.||.||..|..|..||...||||||||.|||||.|||....|.||.
BPUM_1673___y 758 ATGTCCTCGTTGGTCTTTTGTGCAGAAGTGCAGTCGGTCAGAAATTAACG 807
BSNT_05148___ 808 AGTTATATTACAGCTTTGACG--GGTCCGAAGCTGGAAGGTGAAGTGGAC 855
|||||.||| |.||.|| ||.||.||....||||..|||||.||.
BPUM_1673___y 808 AGTTACATT-----TCTGTCGTCGGACCAAAAGGAGAAGAAGAAGTCGAT 852
BSNT_05148___ 856 GGTCCGGAAGAATTCCATCTT-GTCATCGTTGACAATGGACGATCCAATA 904
||.||.||||||||.|| ||| |||||.||.||||||||.||.|||||||
BPUM_1673___y 853 GGACCAGAAGAATTTCA-CTTGGTCATTGTGGACAATGGGCGGTCCAATA 901
BSNT_05148___ 905 TCCTTGGAACGGAATTCCAGTCTGTGCTGCAATGTATCCGCTGTGCCGCC 954
|..|.||.||||..||.|||.||||.||.||||||||.||.||.||.|||
BPUM_1673___y 902 TATTAGGTACGGCCTTTCAGCCTGTTCTCCAATGTATTCGGTGCGCAGCC 951
BSNT_05148___ 955 TGTATCAATGTCTGTCCTGTGTACCGCCATGTCGGCGGACATTCATACGG 1004
||.||||||||.||.||.||.|||||.|||||.|||||||||||||||||
BPUM_1673___y 952 TGCATCAATGTGTGCCCAGTTTACCGGCATGTGGGCGGACATTCATACGG 1001
BSNT_05148___ 1005 CTCAATCTACTCGGGGCCTATCGGAGCGGTTTTATCACCGTTGCTCGGCG 1054
.||.||.|||.|||||||.||.||.||.||||||||||||.|.||.||||
BPUM_1673___y 1002 ATCGATTTACCCGGGGCCAATTGGTGCTGTTTTATCACCGCTTCTTGGCG 1051
BSNT_05148___ 1055 GTTATGACGATTATAAGGAGCTGCCGTACGCGTCTTCA--CTGTGCGCTG 1102
|.|||||.||.|||.|.|||||.||.|..||.|| || ||.|||||.|
BPUM_1673___y 1052 GCTATGATGACTATCAAGAGCTTCCCTTTGCATC--CAGCCTTTGCGCAG 1099
BSNT_05148___ 1103 CTTGTTCAGAAGCCTGCCCGGTCAAAATCCCGCTTCATGAGCTGCTACTC 1152
|.|||.||||.||.|||||.||.||.|||||||||||.|||.|..||.|.
BPUM_1673___y 1100 CCTGTACAGATGCTTGCCCAGTAAAGATCCCGCTTCACGAGTTATTAATA 1149
BSNT_05148___ 1153 AAGCATCGTCAGAAT-ATCGTCGAAAAAGAAGGCAGGGCGCCGATCAG-T 1200
||.|||||.|| |.| |||||.||||||||.||.||.|||||.| .|| |
BPUM_1673___y 1150 AAACATCGACA-AGTCATCGTTGAAAAAGAGGGAAGAGCGCCTA-AAGCT 1197
BSNT_05148___ 1201 GAAAAGCTTGCAATGAAAGCATTCGGACTTGGCGCATC--CTCC------ 1242
||||.|.|.||.||||||...||||||.|.|||||||| ||||
BPUM_1673___y 1198 GAAATGATGGCGATGAAAATGTTCGGAATGGGCGCATCGACTCCCGGGAT 1247
BSNT_05148___ 1243 TTATCGCTTTACAAAATGGGCTCAAAATGGGCGCCGGCCGCC-------- 1284
.|||| ||.|.||..||||| ||.|||
BPUM_1673___y 1248 GTATC--------AATTCGGAACAAAA---------GCAGCCCCTCTATT 1280
BSNT_05148___ 1285 -ATGACGCCTTT---TACAGA-GGACGAAAAAATTTCGAAAGGGCCCGGC 1329
||||..|.|.| |.||.| |||| |.|||||.|||||....||.
BPUM_1673___y 1281 GATGAATCGTATGGCTTCAAACGGAC----AGATTTCAAAAGGTATAGGT 1326
BSNT_05148___ 1330 CCGCTTAAA-AATTGGACCCAGATCCGCGACTTTCCGGCACCGCATAAAT 1378
|| .||||| ||||||||..|.||.||.|||.|.||.||.||...||||.
BPUM_1673___y 1327 CC-TTTAAAGAATTGGACAGATATTCGTGACCTGCCAGCTCCAAGTAAAG 1375
BSNT_05148___ 1379 CGAGATTCAGAGACTGGTTTGCGGACAGAGAAACAAGTGAACGCACGAAG 1428
..||||||||.||||||||| |.|.|||.||| ||||
BPUM_1673___y 1376 AAAGATTCAGGGACTGGTTT----AAAAAGAGACA-----------GAAG 1410
BSNT_05148___ 1429 GAGGAGCAGTGA 1440
||||||||||||
BPUM_1673___y 1411 GAGGAGCAGTGA 1422
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