Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05149 and BPUM_1672
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:48
# Commandline: needle
# -asequence dna-align/BSNT_05149___yvfV.1.24716.seq
# -bsequence dna-align/BPUM_1672___yvfV.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05149___yvfV-BPUM_1672___yvfV.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05149___yvfV-BPUM_1672___yvfV.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05149___yvfV
# 2: BPUM_1672___yvfV
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 760
# Identity: 492/760 (64.7%)
# Similarity: 492/760 (64.7%)
# Gaps: 86/760 (11.3%)
# Score: 1451.5
#
#
#=======================================
BSNT_05149___ 1 ATGAAAGTCTCACTT-TTTGTCACTTGTCTTGTTGATATGTTTCAAACAA 49
||||||||| ||.|| ||.||.||||||.|..||||.|.|.|.||..|||
BPUM_1672___y 1 ATGAAAGTC-CATTTATTCGTTACTTGTTTAATTGACACGATGCAGCCAA 49
BSNT_05149___ 50 ATGTCGGAAAAGCAACGGTTGAGCTGCTGGAGCGGCTTGGGTG-CGAGGT 98
||||.|||||.||.||.||.||..||.||||..|.| |.|||| .||.||
BPUM_1672___y 50 ATGTAGGAAAGGCGACAGTGGAAGTGTTGGAAAGAC-TCGGTGTTGAAGT 98
BSNT_05149___ 99 TGATTTTCCAGAAGGGCAGATTTGCTGCGGACAGCCGGCTTACAACAGCG 148
.||.|||||||||...||..|.||||||||||||||.||.|..|||||||
BPUM_1672___y 99 GGAATTTCCAGAATCACAAGTGTGCTGCGGACAGCCAGCCTTTAACAGCG 148
BSNT_05149___ 149 GCTATGTACATGACGCCAAAAAAGCA--ATGAAACGGATGATCGAAACGT 196
|||||..|.|.||..|||..|||||| |..|||| ||||||.||.|.|
BPUM_1672___y 149 GCTATACAAAAGAAACCATTAAAGCAGCAAAAAAC--ATGATCAAAGCCT 196
BSNT_05149___ 197 TT----CAGGATTCCGAATATGTTGTCAGTCCTTCGGGTTCCTGCACAAC 242
|| ||| |.||||||||.||.|..||.||.|||||.||.|...|
BPUM_1672___y 197 TTGAAACAG----CTGAATATGTCGTGACGCCGTCAGGTTCTTGTAAGGC 242
BSNT_05149___ 243 GATGTTCCGGGAGTATCCGCACCTGTTTCAGGATGATCCGAAATG-GGCC 291
||||||....||.|||||.||.||.||..|.||.||.|| |.|| ||.|
BPUM_1672___y 243 GATGTTTTTAGAATATCCTCAACTTTTAAAAGAAGACCC--AGTGTGGTC 290
BSNT_05149___ 292 GATAAAGCGCAAAAGCTG--------GCGGATAAAACGTATGAACTGACA 333
.| ||.|||||| ||.||.|||||.||||||.|.||.
BPUM_1672___y 291 AA-------CACAAGCTGAAGCACTTGCTGAAAAAACATATGAATTAACC 333
BSNT_05149___ 334 GATTTTATTG-TGA--------ACGTCCTTGGGGTAGAGGATGTCGGCGC 374
||.||||||| ||| ||||| |.| |||||.|||||
BPUM_1672___y 334 GAGTTTATTGTTGATATATTACACGTC--------ACA-GATGTAGGCGC 374
BSNT_05149___ 375 GACCCTTCATACAAAAGCGACCTTACATACGTCGTGCCATATGACTAGGC 424
||.|||..|....||.||.||||..||.||.||.||.||||||||.||||
BPUM_1672___y 375 GAGCCTGAAAGGCAACGCAACCTATCACACATCCTGTCATATGACGAGGC 424
BSNT_05149___ 425 TGCTGGGTGTTCGGGAGGAGCCGATGAAGCTGTTGAGCCATGTGAAGGGC 474
|||||.|..||..|||.|..||..|.|..||||||....||||.||.|..
BPUM_1672___y 425 TGCTGCGAATTAAGGAAGCCCCTTTCACACTGTTGTCAAATGTCAAAGAT 474
BSNT_05149___ 475 CTGCAGTTTACAGAGCTTCCGGGCAAACATAACTGCTGCGGATTCGGAGG 524
.||..|.|.|||....|.|||.||..|.|.||.|||||||||||.|||||
BPUM_1672___y 475 TTGTCGATGACACCATTGCCGCGCGCAGAAAATTGCTGCGGATTTGGAGG 524
BSNT_05149___ 525 AACGTTCTCCGTCAAGATGGCGCAGATTTCTGAGCAGATGGTCGATGAAA 574
.||.||.||.||.||.|||.|.|..|||||||||||.|||||||||||||
BPUM_1672___y 525 GACCTTTTCAGTAAAAATGACACCTATTTCTGAGCAAATGGTCGATGAAA 574
BSNT_05149___ 575 AAGTCGAATGTGTGGAGGAAACGGGAGCAGAGGTGC--------TGATCG 616
|||||.||.|..|.|||||.|| |||.|| |.||.|
BPUM_1672___y 575 AAGTCCAAAGCATAGAGGAGAC--------AGGCGCTCAATACATCATTG 616
BSNT_05149___ 617 GTGCTGACTGCGGCTGTTTGATGAATATCGG-GGGACGGCTTGACCGAA- 664
||||.|||||||||||..|..|.|||||.|| |||| |||.|||
BPUM_1672___y 617 GTGCCGACTGCGGCTGCCTTCTCAATATTGGCGGGA------GACTGAAT 660
BSNT_05149___ 665 ----AAGATAAGA---ATGTCAAAGTGATGCACATCGCCGAAGTGCTCAA 707
..||||| | || || ||||||||||.|||||.||.|||.|.||
BPUM_1672___y 661 CGTCTTGATAA-ACCCAT-TC-AAGTGATGCATATCGCAGAGGTGTTAAA 707
BSNT_05149___ 708 CAGCAGATAA 717
.|||.|.|.|
BPUM_1672___y 708 TAGCCGCTGA 717
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