Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02253 and BPUM_1667
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:42
# Commandline: needle
# -asequence dna-align/BSNT_02253___ykoV.1.24716.seq
# -bsequence dna-align/BPUM_1667___ykoV.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02253___ykoV-BPUM_1667___ykoV.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02253___ykoV-BPUM_1667___ykoV.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02253___ykoV
# 2: BPUM_1667___ykoV
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1018
# Identity: 556/1018 (54.6%)
# Similarity: 556/1018 (54.6%)
# Gaps: 302/1018 (29.7%)
# Score: 1297.0
#
#
#=======================================
BSNT_02253___ 1 ATGCATACAATGTGGAAGGGATCG--ATCAGCTTCGGATTAGTAAACATC 48
||||||||..|.|||||.|| || ||.|||||.||..||||.||.||.
BPUM_1667___y 1 ATGCATACGGTTTGGAAAGG--CGGCATTAGCTTTGGGCTAGTCAATATT 48
BSNT_02253___ 49 CCCATCAAGCTATATGCGGCCACAGAAGATAAAGATATTAAACTGCG-CA 97
||..|.|||||.|.|.|.||.|||||..|.||||||||||||.|..| ||
BPUM_1667___y 49 CCAGTGAAGCTGTTTACCGCTACAGAGAACAAAGATATTAAATTAAGACA 98
BSNT_02253___ 98 GCCTCCATAAAGAGGATCACGCACCAATCAAATACGAGAAAGTTTGTACA 147
| ||.|||||||||..||||.|.||.||.||.||..|.||.||||||.|.
BPUM_1667___y 99 G-CTGCATAAAGAGTGTCACACGCCCATTAACTATAAAAAGGTTTGTGCC 147
BSNT_02253___ 148 AATTGC---GAAAAAACTCTTAGT----CCTGATGAAATTGTGAAGGGAT 190
||.||| |||.| .|| ||.||..|||||||.||.|..|
BPUM_1667___y 148 AACTGCGGGGAAGA-------GGTGGCACCAGAACAAATTGTAAAAGCGT 190
BSNT_02253___ 191 ATGAATATGTAAAAGGGAAAT-------ATGTAGTGCTGACGGACGAAGA 233
|.||.||||.||||...|||| || || ||| ||.|||||
BPUM_1667___y 191 ACGAGTATGCAAAAAACAAATTCATTGAAT-TA-----GAC-GAGGAAGA 233
BSNT_02253___ 234 --TTTAAAAAGCTT--AAAACAGGAGCATGAGGAGAAAGCGGTTGAGATT 279
||.||||| ||| |||| ||..||||.||.|||||.|||||.||.
BPUM_1667___y 234 GCTTGAAAAA-CTTCGAAAA---GAAAATGAAGAAAAAGCCGTTGAAATC 279
BSNT_02253___ 280 GTTGACTTTGTTCAGCTTCAGGAAATTGATCCGATTTACT---------- 319
.||||.|||||..||.|..||||.||||||||.||.||.|
BPUM_1667___y 280 ATTGATTTTGTGAAGATAGAGGAGATTGATCCAATCTATTATGAAAGAAG 329
BSNT_02253___ 320 TTAACCGCTCCTACTTTGTCGGCC-----CCGG-GGATAATGGGACGAAG 363
||| |..|||.|| .|| |||| || || ||||.
BPUM_1667___y 330 TTA--------TTTTTTATC-ACCAGATACCGGCGG----TG---CGAAA 363
BSNT_02253___ 364 GCCTATACCCT----------GCTTCGT-GAGGCGCTGCGCTCAACC--G 400
||.|||.|..| |||| | |||| ||.| |
BPUM_1667___y 364 GCATATTCATTATTAAGAAAAGCTT--TAGAGG----------AATCGGG 401
BSNT_02253___ 401 GAAAGATCGGTATCGCCAATATGACAATCAGGTCAAAGCAGCAGCTGGCG 450
|||| ||.|||.|.||.||.||.|..|||.|.||||||.||||..|.|||
BPUM_1667___y 402 GAAA-ATTGGTGTGGCAAAGATTATGATCCGCTCAAAGGAGCAATTAGCG 450
BSNT_02253___ 451 ATTCTCCGT---GT-TTATGAAAATTGTATCGTCATGGAGTCTATCCATT 496
|| ||| || .||||||.||..|.|..|.|||||..|.||.||||
BPUM_1667___y 451 AT----CGTTAGGTGCTATGAACATATTTTGCTGATGGAAACCATTCATT 496
BSNT_02253___ 497 ATCCGGATGAGGTCAGAAGCGCCGCTCATGTCCCAGGTGTACCTGATCAA 546
.|||.|||||..|.||| ||.||..|||.||||||..|| |
BPUM_1667___y 497 TTCCAGATGAAATTAGA---------CAAGTATCAGATGTACCGAAT--A 535
BSNT_02253___ 547 TC------GAATGTAAACGAT-------AAGGA-------ACTGCAAACT 576
|| ||| |.|||| || ||||| ||.|| .||
BPUM_1667___y 536 TCCCCCAAGAA-GAAAAC-ATTGTGAAAAAGGAGTTAGATACAGC--CCT 581
BSNT_02253___ 577 GCTATT------ACA-TTAA-----------------------TA----G 592
.||.|| ||| |||| || |
BPUM_1667___y 582 TCTTTTAATCGAACAGTTAACCACAACTTTTGATCCAGCAGCCTATCAGG 631
BSNT_02253___ 593 ATGA--ACTGA------CTGCTGAGTTTGAGCCTGAG---AAATA--TGA 629
|||| ||.|| |||.|||.||| |..|.||| ||||| ||.
BPUM_1667___y 632 ATGAATACAGAGAACAGCTGATGAATTT-AATCGGAGATAAAATATCTGG 680
BSNT_02253___ 630 AGACACGTACCG-ACAGGCGCTGCTGCAAAGAGTCAACGACAAGCTTGAA 678
||| ||.||||| .|||.| ||| |||||||.|
BPUM_1667___y 681 AGA-ACATACCGTTCAGCC----------AGA---AACGACAGG------ 710
BSNT_02253___ 679 AATAAAGAAACAGCCGTCACTCCTGATAAAGCGCCACCACGTGAAGATGT 728
|||| |||.|.|||.|| ||| ||.|.| ||| |||.|
BPUM_1667___y 711 --TAAA-AAAGATCCGGCA-TCC----AATGTG-----ACG----GATTT 743
BSNT_02253___ 729 CATTGACCTGGTAAGCGCTCTGCAAGC--CAGCATTGACCGAACCAGAAG 776
.| |||.| |||||.||.|| || ||.||.|||.|.|
BPUM_1667___y 744 AA------TGGCA---GCTCTTCAGGCTTCA--ATCGATCGATCAA---- 778
BSNT_02253___ 777 GCCGAACCGGGAGACACCGGCTGCCGCACCTGCACAAGCCGCTGAACCGA 826
|||| ||.|| |||| ||| |
BPUM_1667___y 779 ----AACC---AGCCA-------------------AAGC----GAA---A 795
BSNT_02253___ 827 AAG---GAGCCGGAGATAAAAAACGAAAAACAACTAG------AAAAAAA 867
||| |.||| |||||||.||||||| ||.|| ||.||||
BPUM_1667___y 796 AAGGCAGCGCC-----TAAAAAAAGAAAAAC-ACCAGCGAAAAAAGAAAA 839
BSNT_02253___ 868 GCCTCCGGCACGTCATAG 885
|..| ||| |.|
BPUM_1667___y 840 GAAT---GCA--TAA--- 849
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