Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02253 and BPUM_1667

See Amino acid alignment / Visit BSNT_02253 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:42
# Commandline: needle
#    -asequence dna-align/BSNT_02253___ykoV.1.24716.seq
#    -bsequence dna-align/BPUM_1667___ykoV.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02253___ykoV-BPUM_1667___ykoV.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02253___ykoV-BPUM_1667___ykoV.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02253___ykoV
# 2: BPUM_1667___ykoV
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1018
# Identity:     556/1018 (54.6%)
# Similarity:   556/1018 (54.6%)
# Gaps:         302/1018 (29.7%)
# Score: 1297.0
# 
#
#=======================================

BSNT_02253___      1 ATGCATACAATGTGGAAGGGATCG--ATCAGCTTCGGATTAGTAAACATC     48
                     ||||||||..|.|||||.||  ||  ||.|||||.||..||||.||.||.
BPUM_1667___y      1 ATGCATACGGTTTGGAAAGG--CGGCATTAGCTTTGGGCTAGTCAATATT     48

BSNT_02253___     49 CCCATCAAGCTATATGCGGCCACAGAAGATAAAGATATTAAACTGCG-CA     97
                     ||..|.|||||.|.|.|.||.|||||..|.||||||||||||.|..| ||
BPUM_1667___y     49 CCAGTGAAGCTGTTTACCGCTACAGAGAACAAAGATATTAAATTAAGACA     98

BSNT_02253___     98 GCCTCCATAAAGAGGATCACGCACCAATCAAATACGAGAAAGTTTGTACA    147
                     | ||.|||||||||..||||.|.||.||.||.||..|.||.||||||.|.
BPUM_1667___y     99 G-CTGCATAAAGAGTGTCACACGCCCATTAACTATAAAAAGGTTTGTGCC    147

BSNT_02253___    148 AATTGC---GAAAAAACTCTTAGT----CCTGATGAAATTGTGAAGGGAT    190
                     ||.|||   |||.|       .||    ||.||..|||||||.||.|..|
BPUM_1667___y    148 AACTGCGGGGAAGA-------GGTGGCACCAGAACAAATTGTAAAAGCGT    190

BSNT_02253___    191 ATGAATATGTAAAAGGGAAAT-------ATGTAGTGCTGACGGACGAAGA    233
                     |.||.||||.||||...||||       || ||     ||| ||.|||||
BPUM_1667___y    191 ACGAGTATGCAAAAAACAAATTCATTGAAT-TA-----GAC-GAGGAAGA    233

BSNT_02253___    234 --TTTAAAAAGCTT--AAAACAGGAGCATGAGGAGAAAGCGGTTGAGATT    279
                       ||.||||| |||  ||||   ||..||||.||.|||||.|||||.||.
BPUM_1667___y    234 GCTTGAAAAA-CTTCGAAAA---GAAAATGAAGAAAAAGCCGTTGAAATC    279

BSNT_02253___    280 GTTGACTTTGTTCAGCTTCAGGAAATTGATCCGATTTACT----------    319
                     .||||.|||||..||.|..||||.||||||||.||.||.|          
BPUM_1667___y    280 ATTGATTTTGTGAAGATAGAGGAGATTGATCCAATCTATTATGAAAGAAG    329

BSNT_02253___    320 TTAACCGCTCCTACTTTGTCGGCC-----CCGG-GGATAATGGGACGAAG    363
                     |||        |..|||.|| .||     |||| ||    ||   ||||.
BPUM_1667___y    330 TTA--------TTTTTTATC-ACCAGATACCGGCGG----TG---CGAAA    363

BSNT_02253___    364 GCCTATACCCT----------GCTTCGT-GAGGCGCTGCGCTCAACC--G    400
                     ||.|||.|..|          ||||  | ||||          ||.|  |
BPUM_1667___y    364 GCATATTCATTATTAAGAAAAGCTT--TAGAGG----------AATCGGG    401

BSNT_02253___    401 GAAAGATCGGTATCGCCAATATGACAATCAGGTCAAAGCAGCAGCTGGCG    450
                     |||| ||.|||.|.||.||.||.|..|||.|.||||||.||||..|.|||
BPUM_1667___y    402 GAAA-ATTGGTGTGGCAAAGATTATGATCCGCTCAAAGGAGCAATTAGCG    450

BSNT_02253___    451 ATTCTCCGT---GT-TTATGAAAATTGTATCGTCATGGAGTCTATCCATT    496
                     ||    |||   || .||||||.||..|.|..|.|||||..|.||.||||
BPUM_1667___y    451 AT----CGTTAGGTGCTATGAACATATTTTGCTGATGGAAACCATTCATT    496

BSNT_02253___    497 ATCCGGATGAGGTCAGAAGCGCCGCTCATGTCCCAGGTGTACCTGATCAA    546
                     .|||.|||||..|.|||         ||.||..|||.||||||..||  |
BPUM_1667___y    497 TTCCAGATGAAATTAGA---------CAAGTATCAGATGTACCGAAT--A    535

BSNT_02253___    547 TC------GAATGTAAACGAT-------AAGGA-------ACTGCAAACT    576
                     ||      ||| |.|||| ||       |||||       ||.||  .||
BPUM_1667___y    536 TCCCCCAAGAA-GAAAAC-ATTGTGAAAAAGGAGTTAGATACAGC--CCT    581

BSNT_02253___    577 GCTATT------ACA-TTAA-----------------------TA----G    592
                     .||.||      ||| ||||                       ||    |
BPUM_1667___y    582 TCTTTTAATCGAACAGTTAACCACAACTTTTGATCCAGCAGCCTATCAGG    631

BSNT_02253___    593 ATGA--ACTGA------CTGCTGAGTTTGAGCCTGAG---AAATA--TGA    629
                     ||||  ||.||      |||.|||.||| |..|.|||   |||||  ||.
BPUM_1667___y    632 ATGAATACAGAGAACAGCTGATGAATTT-AATCGGAGATAAAATATCTGG    680

BSNT_02253___    630 AGACACGTACCG-ACAGGCGCTGCTGCAAAGAGTCAACGACAAGCTTGAA    678
                     ||| ||.||||| .|||.|          |||   |||||||.|      
BPUM_1667___y    681 AGA-ACATACCGTTCAGCC----------AGA---AACGACAGG------    710

BSNT_02253___    679 AATAAAGAAACAGCCGTCACTCCTGATAAAGCGCCACCACGTGAAGATGT    728
                       |||| |||.|.|||.|| |||    ||.|.|     |||    |||.|
BPUM_1667___y    711 --TAAA-AAAGATCCGGCA-TCC----AATGTG-----ACG----GATTT    743

BSNT_02253___    729 CATTGACCTGGTAAGCGCTCTGCAAGC--CAGCATTGACCGAACCAGAAG    776
                     .|      |||.|   |||||.||.||  ||  ||.||.|||.|.|    
BPUM_1667___y    744 AA------TGGCA---GCTCTTCAGGCTTCA--ATCGATCGATCAA----    778

BSNT_02253___    777 GCCGAACCGGGAGACACCGGCTGCCGCACCTGCACAAGCCGCTGAACCGA    826
                         ||||   ||.||                   ||||    |||   |
BPUM_1667___y    779 ----AACC---AGCCA-------------------AAGC----GAA---A    795

BSNT_02253___    827 AAG---GAGCCGGAGATAAAAAACGAAAAACAACTAG------AAAAAAA    867
                     |||   |.|||     |||||||.||||||| ||.||      ||.||||
BPUM_1667___y    796 AAGGCAGCGCC-----TAAAAAAAGAAAAAC-ACCAGCGAAAAAAGAAAA    839

BSNT_02253___    868 GCCTCCGGCACGTCATAG    885
                     |..|   |||  |.|   
BPUM_1667___y    840 GAAT---GCA--TAA---    849


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