Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01158 and BPUM_1653
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:48
# Commandline: needle
# -asequence dna-align/BSNT_01158.1.24716.seq
# -bsequence dna-align/BPUM_1653.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01158-BPUM_1653.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01158-BPUM_1653.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01158
# 2: BPUM_1653
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 519
# Identity: 315/519 (60.7%)
# Similarity: 315/519 (60.7%)
# Gaps: 81/519 (15.6%)
# Score: 813.0
#
#
#=======================================
BSNT_01158 1 ATGGAAACTCAAAAAATGGGTGAACTATATCAAAAGATTGCTGAACATCT 50
.|||||||..|.||||||...|||||.|||.||.|.|||||.||..||.|
BPUM_1653 1 GTGGAAACAAATAAAATGTCAGAACTCTATAAAGAAATTGCCGAGAATAT 50
BSNT_01158 51 AAATGAAATGATTCCATCTCAATGGGA-AAAGATCGTTTTATATGCTGAA 99
|.|.|||||.||.|||.||.|||||.| ||||.|.|..|| ||..|.|||
BPUM_1653 51 ACACGAAATCATACCAACTGAATGGCATAAAGTTTGGCTT-TACTCCGAA 99
BSNT_01158 100 ATACTTGATGACTCAGCGGATATATAC-TTTTATTTTACAACACCAAATA 148
.|..|..||||.|||.|.||..| |.| |||||||||...|| |.
BPUM_1653 100 GTGTTAAATGATTCATCAGAGGT-TGCTTTTTATTTTTGCAC------TG 142
BSNT_01158 149 AT-AACAGTGATTATTTATTTTCTCATTATATACCTGAACACTTTGATGT 197
|| ||.|| .|.|||||.|.|..||||.||||.|||.|..|||||.|.||
BPUM_1653 143 ATGAAGAG-AAATATTTCTATGGTCATAATATTCCTTACGACTTTCAAGT 191
BSNT_01158 198 GAGCGAA-GAGATTTACGATCAACTACTAATT-GAACTTCAAGAGCTATT 245
.||.||| ||| |.||||.|.|..|..||||| ||| |.||||||.||||
BPUM_1653 192 TAGTGAACGAG-TATACGTTAATATTTTAATTAGAA-TGCAAGAGTTATT 239
BSNT_01158 246 TGAAGAACTAAAAGAGGAAT---TTAAAC-TAGGCAACCAAGATATTTGG 291
...|.||.|.|.|||.|||| |.|||| ||...||| ||.|| |||
BPUM_1653 240 CATACAATTGAGAGAAGAATGTATAAAACATAATGAAC--AGGTA--TGG 285
BSNT_01158 292 ACTA-ATCT-CACTTTAAAATTAGAAAACACCGGAAAGTTTTCAATTGAT 339
||.| |.|| |.||| .||.|||||.||||.||.|||.|.||||||||.
BPUM_1653 286 ACAACAGCTACCCTT--GAACTAGAACACACAGGGAAGCTATCAATTGAA 333
BSNT_01158 340 TATAATTATGATGATGTTTTATCCTC----TGAACTTGATGACCTTCAAA 385
|.|..||||||||||||.|||...|| |.||.|.|||.| ||||
BPUM_1653 334 TTTGGTTATGATGATGTCTTAAATTCAGGTTTAAATGGATCA----CAAA 379
BSNT_01158 386 GACGAGATGTTTGGAAATATCAAAATTTAGGGATATTGCCTAAA------ 429
||..||...|.|||..||||.|.||||||||.||||..||.|||
BPUM_1653 380 GAAAAGCCATATGGGCATATGAGAATTTAGGAATATACCCAAAAAGAAAA 429
BSNT_01158 430 --GATGAGGACGA-----TA-AAGAATTTGTAATAAACTACTTCGGTCTA 471
|.|.||| || || ||||||.|.|||.|| |
BPUM_1653 430 TCGGTTAGG--GAATTTCTAGAAGAATATATAAAAA-------------A 464
BSNT_01158 472 TAA---------------- 474
|||
BPUM_1653 465 TAAAGAAGAAAACAACTAA 483
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