Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02801 and BPUM_1636

See Amino acid alignment / Visit BSNT_02801 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:27
# Commandline: needle
#    -asequence dna-align/BSNT_02801___glnR.1.24716.seq
#    -bsequence dna-align/BPUM_1636___glnR.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02801___glnR-BPUM_1636___glnR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02801___glnR-BPUM_1636___glnR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02801___glnR
# 2: BPUM_1636___glnR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 420
# Identity:     316/420 (75.2%)
# Similarity:   316/420 (75.2%)
# Gaps:          21/420 ( 5.0%)
# Score: 1190.0
# 
#
#=======================================

BSNT_02801___      1 ATGAGTGATAATATTCGCCGCTCAATGCCTTTATTTCCAATAGGAATTGT     50
                     |||||||||||.|||||||||||||||||||||||.|||||.||.|||||
BPUM_1636___g      1 ATGAGTGATAACATTCGCCGCTCAATGCCTTTATTCCCAATTGGGATTGT     50

BSNT_02801___     51 CATGCAGTTAACTGAGTTATCAGCAAGACAAATTCGATATTATGAGGAGA    100
                     |||||||.||||.||.|||||.|||||.||||||||.|||||||||||.|
BPUM_1636___g     51 CATGCAGCTAACAGAATTATCTGCAAGGCAAATTCGCTATTATGAGGAAA    100

BSNT_02801___    101 ATGGACTGATATTTCCAGCCAGAAGTGAAGGGAATAGACGATTATTTTCA    150
                     |||||.|..||||||||||.||||||||.||||||.|.|||||||||||.
BPUM_1636___g    101 ATGGATTAGTATTTCCAGCAAGAAGTGATGGGAATCGCCGATTATTTTCT    150

BSNT_02801___    151 TTTCATGATGTAGATAAACTGTTAGAAATCAAGCACCTGATAGAACAAGG    200
                     ||.||||||||.||||||.|..|||||||.||..||||.||.||||||||
BPUM_1636___g    151 TTCCATGATGTTGATAAATTACTAGAAATTAAAAACCTCATCGAACAAGG    200

BSNT_02801___    201 TGTAAACATGGCAGGAATTAAACAGATTCTGGCGAAAGCCGAAGCCG---    247
                     ||||||||||||||||||.|||.|..||.|.||.|||||.||.||.|   
BPUM_1636___g    201 TGTAAACATGGCAGGAATCAAAAAACTTTTTGCCAAAGCTGAGGCAGAAC    250

BSNT_02801___    248 AGCCAG-------AACAAAAACAAAACGAGAAGACGAAAAAAC--CAATG    288
                     |.||||       ..||||.||    ||||     ||.|||||  ||..|
BPUM_1636___g    251 ATCCAGTGTCTGATGCAAAGAC----CGAG-----GAGAAAACCACAGCG    291

BSNT_02801___    289 AAACATGATCTGTCCGATGACGAACTGAGACAGCTCCTGAAAAACGAGCT    338
                     ||.||..|..||.|.|||||.|||||.||..||||.|||||.||.||.||
BPUM_1636___g    292 AAGCACAACTTGACAGATGATGAACTCAGGAAGCTACTGAAGAAGGAACT    341

BSNT_02801___    339 CATGCAAGCCGGCCGTTTTCAAAGAGGGAATACATTCCGTCAAGGCGACA    388
                     |||.||.||.||.|||||.|||..|||.|..||.||..|.||.||.||.|
BPUM_1636___g    342 CATTCAGGCTGGACGTTTCCAACAAGGAACGACCTTTAGGCAGGGGGATA    391

BSNT_02801___    389 TGTCCCGCTTCTTTCATTAA    408
                     ||||..|.|||||.|.||||
BPUM_1636___g    392 TGTCAAGGTTCTTCCGTTAA    411


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