Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02798 and BPUM_1633

See Amino acid alignment / Visit BSNT_02798 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:27
# Commandline: needle
#    -asequence dna-align/BSNT_02798___spoVK.1.24716.seq
#    -bsequence dna-align/BPUM_1633___spoVK.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02798___spoVK-BPUM_1633___spoVK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02798___spoVK-BPUM_1633___spoVK.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02798___spoVK
# 2: BPUM_1633___spoVK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 999
# Identity:     739/999 (74.0%)
# Similarity:   739/999 (74.0%)
# Gaps:          72/999 ( 7.2%)
# Score: 2700.0
# 
#
#=======================================

BSNT_02798___      1 TTGGAGCGCGCTGTGACTTATAAAAACAACGGACAGATCAACATTATTCT     50
                     ||||||||.|||||.||.||||||||||||||.||.|||||.|||||.||
BPUM_1633___s      1 TTGGAGCGAGCTGTCACATATAAAAACAACGGTCAAATCAATATTATACT     50

BSNT_02798___     51 GAACGGGCAAAAGCAGGT----GCTGACGAATGCTGAGGCAGAAGCGGAA     96
                     .||.||.||||||||.||    |.||    ||||.||..||||.||.|||
BPUM_1633___s     51 TAATGGACAAAAGCAAGTATTGGTTG----ATGCAGATTCAGAGGCAGAA     96

BSNT_02798___     97 TATCAGGCTGCATTGCAAAAAAACGAAGCAAAGCACGGCATTTTGAAGGA    146
                     ||.|..|..||||||||.|||||.||.|||||.|||.||||.||...|||
BPUM_1633___s     97 TACCTAGAAGCATTGCAGAAAAATGAGGCAAAACACAGCATCTTACGGGA    146

BSNT_02798___    147 AATCGAAAAAGAAATGAGCGCAT----TAGTTGGGATGGAGGAAATGAAA    192
                     |||.|||...|||||||    ||    |.||.||.|||||.|||||||||
BPUM_1633___s    147 AATAGAACGTGAAATGA----ATAGCCTTGTCGGTATGGATGAAATGAAA    192

BSNT_02798___    193 CGCAACATCAAGGAAATATACGCTTGGATTTTTGTGAACCAAAAACGCGC    242
                     ||.|||||.||.|||||.||.||||||||.|||||.||.||||||.| ||
BPUM_1633___s    193 CGAAACATAAAAGAAATTTATGCTTGGATCTTTGTCAATCAAAAAAG-GC    241

BSNT_02798___    243 -GGAGCAAGGCTTGAAGGTTGGAAAGCAAGCGCTGCACATGATGTTTAAA    291
                      |||.|||||.||||||||.||.||.||||||||.||.||||||||.|||
BPUM_1633___s    242 AGGAACAAGGGTTGAAGGTAGGTAAACAAGCGCTTCATATGATGTTCAAA    291

BSNT_02798___    292 GGAAATCCGGGAACGGGAAAAACGACGGTTGCACGGCTCATCGGCAAGCT    341
                     ||||||||.||.||.||.|||||.|||||.|||.||||..||||.|||||
BPUM_1633___s    292 GGAAATCCAGGCACAGGGAAAACAACGGTGGCAAGGCTTGTCGGGAAGCT    341

BSNT_02798___    342 GTTCTTTGAAATGAATGTCCTGTCAAAAGGCCACTTAATAGAAGCGGAGC    391
                     .||||||||||||||||||||.|||||.||.||||||||.||||||||.|
BPUM_1633___s    342 TTTCTTTGAAATGAATGTCCTTTCAAAGGGTCACTTAATTGAAGCGGAAC    391

BSNT_02798___    392 GGGCTGACCTGGTCGGGGAGTATATCGGACATACCGCCCAAAAGACGAGA    441
                     |.|..||.||.|||||||||||.|||||.|||||.||.|||||.||.|||
BPUM_1633___s    392 GCGGAGATCTTGTCGGGGAGTACATCGGTCATACTGCTCAAAAAACAAGA    441

BSNT_02798___    442 GATTTAATCAAAAAGTCATTAGGTGGCATTTTGTTTATAGACGAAGCCTA    491
                     ||.|||||.|||||.|||.||||.|||||||||||.||.|||||||||||
BPUM_1633___s    442 GACTTAATTAAAAAATCACTAGGCGGCATTTTGTTCATCGACGAAGCCTA    491

BSNT_02798___    492 CTCGCTGGCAAGAGGCGGCGAAAAGGACTTTGGGAAAGAAGCGATCGACA    541
                     .||.||.||..|.||.||.||||||||.||.||||||||||||||.||.|
BPUM_1633___s    492 TTCTCTTGCCCGCGGAGGTGAAAAGGATTTCGGGAAAGAAGCGATTGATA    541

BSNT_02798___    542 CACTTGTAAAGCATATGGAAGACAAACAGCATGAGTTTATTTTGATACTC    591
                     ||.|.||.||.||||||||.|||||||||||.||.||.|||.|.||.||.
BPUM_1633___s    542 CATTAGTCAAACATATGGAGGACAAACAGCACGAATTCATTCTCATTCTT    591

BSNT_02798___    592 GCCGGATATTCACGGGAAATGGATCATTTTCTCTCGTTAAATCCCGGACT    641
                     ||.||.||.||...||||||||||||||||||.||.|||||.||||||||
BPUM_1633___s    592 GCTGGCTACTCCAAGGAAATGGATCATTTTCTATCTTTAAACCCCGGACT    641

BSNT_02798___    642 CCAATCAAGATTTCCCATCTCCATTGAT----TTTCCGGATTACTCTGT-    686
                     .|||||.||||||||.||   ||.| ||    |||||.|||||..|.|| 
BPUM_1633___s    642 GCAATCCAGATTTCCGAT---CAAT-ATCAGCTTTCCTGATTATACCGTC    687

BSNT_02798___    687 GACCCAGCTCATGGAGATTGCGAAACGAATGATCGATGAAAGGGAA----    732
                     || .|||||||||||.|||||.|||||.|||||.|.|||.||.|||    
BPUM_1633___s    688 GA-TCAGCTCATGGACATTGCCAAACGGATGATGGCTGACAGAGAATATA    736

BSNT_02798___    733 ----TACCAGCTCAGTCAAGAAGCTGAATGGAAATTGAAAGATTACTTAA    778
                         ||||        |||||||||||||||||..||...|||||.||||
BPUM_1633___s    737 TATTTACC--------CAAGAAGCTGAATGGAAGCTGCGTGATTATTTAA    778

BSNT_02798___    779 TGACA-GTGAAAAGCACGACAAGTCC--CATTAAATTCAGCAATGGACGT    825
                     || || .|.||||||||.||.|||||  ||  |||||||||||.||.||.
BPUM_1633___s    779 TG-CATATTAAAAGCACCACGAGTCCAGCA--AAATTCAGCAACGGCCGC    825

BSNT_02798___    826 TTTGTCAGAAATGTGATCGAAAAATCGATCAGAGCACAAGCCATGAGGCT    875
                     |||||.|||||...|||.|||||..|.||..||.|.|||||.|||||.||
BPUM_1633___s    826 TTTGTGAGAAACACGATTGAAAAGGCTATTCGAACCCAAGCGATGAGACT    875

BSNT_02798___    876 TTTAATGGGAGACCA--ATACTTAAAAAGCGACTTGATGACCATCAAAAG    923
                     ..||.|.|..||.||  ||..|.|||||  ||.|||.|.||.||.|||||
BPUM_1633___s    876 CCTACTAGTGGATCATTATGATAAAAAA--GATTTGCTTACGATTAAAAG    923

BSNT_02798___    924 CCAAGATCTTTCC--ATTAAAGAAGAAGCATCTGGATCTGCATAG----    966
                     .||.||||  |||  ||.|||||          ||||..||.||.    
BPUM_1633___s    924 TCACGATC--TCCAAATGAAAGA----------GGATACGCCTACTTAA    960


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