Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02798 and BPUM_1633
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:27
# Commandline: needle
# -asequence dna-align/BSNT_02798___spoVK.1.24716.seq
# -bsequence dna-align/BPUM_1633___spoVK.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02798___spoVK-BPUM_1633___spoVK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02798___spoVK-BPUM_1633___spoVK.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02798___spoVK
# 2: BPUM_1633___spoVK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 999
# Identity: 739/999 (74.0%)
# Similarity: 739/999 (74.0%)
# Gaps: 72/999 ( 7.2%)
# Score: 2700.0
#
#
#=======================================
BSNT_02798___ 1 TTGGAGCGCGCTGTGACTTATAAAAACAACGGACAGATCAACATTATTCT 50
||||||||.|||||.||.||||||||||||||.||.|||||.|||||.||
BPUM_1633___s 1 TTGGAGCGAGCTGTCACATATAAAAACAACGGTCAAATCAATATTATACT 50
BSNT_02798___ 51 GAACGGGCAAAAGCAGGT----GCTGACGAATGCTGAGGCAGAAGCGGAA 96
.||.||.||||||||.|| |.|| ||||.||..||||.||.|||
BPUM_1633___s 51 TAATGGACAAAAGCAAGTATTGGTTG----ATGCAGATTCAGAGGCAGAA 96
BSNT_02798___ 97 TATCAGGCTGCATTGCAAAAAAACGAAGCAAAGCACGGCATTTTGAAGGA 146
||.|..|..||||||||.|||||.||.|||||.|||.||||.||...|||
BPUM_1633___s 97 TACCTAGAAGCATTGCAGAAAAATGAGGCAAAACACAGCATCTTACGGGA 146
BSNT_02798___ 147 AATCGAAAAAGAAATGAGCGCAT----TAGTTGGGATGGAGGAAATGAAA 192
|||.|||...||||||| || |.||.||.|||||.|||||||||
BPUM_1633___s 147 AATAGAACGTGAAATGA----ATAGCCTTGTCGGTATGGATGAAATGAAA 192
BSNT_02798___ 193 CGCAACATCAAGGAAATATACGCTTGGATTTTTGTGAACCAAAAACGCGC 242
||.|||||.||.|||||.||.||||||||.|||||.||.||||||.| ||
BPUM_1633___s 193 CGAAACATAAAAGAAATTTATGCTTGGATCTTTGTCAATCAAAAAAG-GC 241
BSNT_02798___ 243 -GGAGCAAGGCTTGAAGGTTGGAAAGCAAGCGCTGCACATGATGTTTAAA 291
|||.|||||.||||||||.||.||.||||||||.||.||||||||.|||
BPUM_1633___s 242 AGGAACAAGGGTTGAAGGTAGGTAAACAAGCGCTTCATATGATGTTCAAA 291
BSNT_02798___ 292 GGAAATCCGGGAACGGGAAAAACGACGGTTGCACGGCTCATCGGCAAGCT 341
||||||||.||.||.||.|||||.|||||.|||.||||..||||.|||||
BPUM_1633___s 292 GGAAATCCAGGCACAGGGAAAACAACGGTGGCAAGGCTTGTCGGGAAGCT 341
BSNT_02798___ 342 GTTCTTTGAAATGAATGTCCTGTCAAAAGGCCACTTAATAGAAGCGGAGC 391
.||||||||||||||||||||.|||||.||.||||||||.||||||||.|
BPUM_1633___s 342 TTTCTTTGAAATGAATGTCCTTTCAAAGGGTCACTTAATTGAAGCGGAAC 391
BSNT_02798___ 392 GGGCTGACCTGGTCGGGGAGTATATCGGACATACCGCCCAAAAGACGAGA 441
|.|..||.||.|||||||||||.|||||.|||||.||.|||||.||.|||
BPUM_1633___s 392 GCGGAGATCTTGTCGGGGAGTACATCGGTCATACTGCTCAAAAAACAAGA 441
BSNT_02798___ 442 GATTTAATCAAAAAGTCATTAGGTGGCATTTTGTTTATAGACGAAGCCTA 491
||.|||||.|||||.|||.||||.|||||||||||.||.|||||||||||
BPUM_1633___s 442 GACTTAATTAAAAAATCACTAGGCGGCATTTTGTTCATCGACGAAGCCTA 491
BSNT_02798___ 492 CTCGCTGGCAAGAGGCGGCGAAAAGGACTTTGGGAAAGAAGCGATCGACA 541
.||.||.||..|.||.||.||||||||.||.||||||||||||||.||.|
BPUM_1633___s 492 TTCTCTTGCCCGCGGAGGTGAAAAGGATTTCGGGAAAGAAGCGATTGATA 541
BSNT_02798___ 542 CACTTGTAAAGCATATGGAAGACAAACAGCATGAGTTTATTTTGATACTC 591
||.|.||.||.||||||||.|||||||||||.||.||.|||.|.||.||.
BPUM_1633___s 542 CATTAGTCAAACATATGGAGGACAAACAGCACGAATTCATTCTCATTCTT 591
BSNT_02798___ 592 GCCGGATATTCACGGGAAATGGATCATTTTCTCTCGTTAAATCCCGGACT 641
||.||.||.||...||||||||||||||||||.||.|||||.||||||||
BPUM_1633___s 592 GCTGGCTACTCCAAGGAAATGGATCATTTTCTATCTTTAAACCCCGGACT 641
BSNT_02798___ 642 CCAATCAAGATTTCCCATCTCCATTGAT----TTTCCGGATTACTCTGT- 686
.|||||.||||||||.|| ||.| || |||||.|||||..|.||
BPUM_1633___s 642 GCAATCCAGATTTCCGAT---CAAT-ATCAGCTTTCCTGATTATACCGTC 687
BSNT_02798___ 687 GACCCAGCTCATGGAGATTGCGAAACGAATGATCGATGAAAGGGAA---- 732
|| .|||||||||||.|||||.|||||.|||||.|.|||.||.|||
BPUM_1633___s 688 GA-TCAGCTCATGGACATTGCCAAACGGATGATGGCTGACAGAGAATATA 736
BSNT_02798___ 733 ----TACCAGCTCAGTCAAGAAGCTGAATGGAAATTGAAAGATTACTTAA 778
|||| |||||||||||||||||..||...|||||.||||
BPUM_1633___s 737 TATTTACC--------CAAGAAGCTGAATGGAAGCTGCGTGATTATTTAA 778
BSNT_02798___ 779 TGACA-GTGAAAAGCACGACAAGTCC--CATTAAATTCAGCAATGGACGT 825
|| || .|.||||||||.||.||||| || |||||||||||.||.||.
BPUM_1633___s 779 TG-CATATTAAAAGCACCACGAGTCCAGCA--AAATTCAGCAACGGCCGC 825
BSNT_02798___ 826 TTTGTCAGAAATGTGATCGAAAAATCGATCAGAGCACAAGCCATGAGGCT 875
|||||.|||||...|||.|||||..|.||..||.|.|||||.|||||.||
BPUM_1633___s 826 TTTGTGAGAAACACGATTGAAAAGGCTATTCGAACCCAAGCGATGAGACT 875
BSNT_02798___ 876 TTTAATGGGAGACCA--ATACTTAAAAAGCGACTTGATGACCATCAAAAG 923
..||.|.|..||.|| ||..|.||||| ||.|||.|.||.||.|||||
BPUM_1633___s 876 CCTACTAGTGGATCATTATGATAAAAAA--GATTTGCTTACGATTAAAAG 923
BSNT_02798___ 924 CCAAGATCTTTCC--ATTAAAGAAGAAGCATCTGGATCTGCATAG---- 966
.||.|||| ||| ||.||||| ||||..||.||.
BPUM_1633___s 924 TCACGATC--TCCAAATGAAAGA----------GGATACGCCTACTTAA 960
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