Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02788 and BPUM_1624
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:26
# Commandline: needle
# -asequence dna-align/BSNT_02788___miaA.1.24716.seq
# -bsequence dna-align/BPUM_1624___miaA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02788___miaA-BPUM_1624___miaA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02788___miaA-BPUM_1624___miaA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02788___miaA
# 2: BPUM_1624___miaA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1055
# Identity: 666/1055 (63.1%)
# Similarity: 666/1055 (63.1%)
# Gaps: 169/1055 (16.0%)
# Score: 2077.5
#
#
#=======================================
BSNT_02788___ 1 ---------------------------------------TTGAATAATAC 11
.||||.||.||
BPUM_1624___m 1 ATGCTATACTGTAGGCAGTTTGTAAAAGAGAGTGATGTTATGAAAAAAAC 50
BSNT_02788___ 12 GAAGCAGCCCGTTGTCATTTTAGTCGGACCGACGGCAGTGGGGAAAACCA 61
|||.||.||.||..|..|.|||||.||||||||.||.||.||.|||||.|
BPUM_1624___m 51 GAAACAACCAGTGATTGTATTAGTAGGACCGACCGCTGTCGGCAAAACAA 100
BSNT_02788___ 62 ATTTAAGTATTCAGCTAGCCAAATCCTTAAACGCAGAAATTATCAGCGGA 111
|..|.||.|||||..||||.|||.|.|..||.|.|||||||||||||||.
BPUM_1624___m 101 AACTGAGCATTCATATAGCAAAAGCATATAATGGAGAAATTATCAGCGGT 150
BSNT_02788___ 112 GATTCGATGCAGATTTATAAAGGGATGGATATTGGAACAGCTAAAATTAC 161
|||||.|||||||||||.|||||.|||||.|||||||||||||||||.||
BPUM_1624___m 151 GATTCTATGCAGATTTACAAAGGAATGGACATTGGAACAGCTAAAATCAC 200
BSNT_02788___ 162 C---GAACAGGAGATGGAGGGAGTGCCCCATCATCTGATTGACATTTTAG 208
| ||| ||.|||||.||.||.||.||.||..|.|||||.|||..||
BPUM_1624___m 201 CTCTGAA---GAAATGGATGGTGTCCCGCACCACTTAATTGATATTAAAG 247
BSNT_02788___ 209 ATCCCCAAGACTCTTTCTCTACTGCCGATTATCA-AAGCTTAGTAAGAAA 257
|.||..|.||.|||||.|||||.||.||.|.||| .||| ||||..|.|.
BPUM_1624___m 248 AGCCGGACGAATCTTTTTCTACAGCTGAATTTCAGCAGC-TAGTCCGTAT 296
BSNT_02788___ 258 TAAAATCAGCGAGATTGCAAATAGA-GGAAAGCTTCCGATGATTGTCGGT 306
.|||||||..||||||||...|||| |||||.| .||.|||||||||||.
BPUM_1624___m 297 GAAAATCAAAGAGATTGCCGCTAGAGGGAAAAC-ACCCATGATTGTCGGC 345
BSNT_02788___ 307 GGTACAGGGCTTTATATACAATCTGTGCTTTACGATTATACATTTACGGA 356
||.|||||..|.|||||.||||||||..|.||.|||||.||||||||.||
BPUM_1624___m 346 GGAACAGGTTTGTATATTCAATCTGTTTTATATGATTACACATTTACCGA 395
BSNT_02788___ 357 AGAGGCAAATGATCCCGTGTTTCGAGAGAGCATGCAAGTGGCCGCT---- 402
.||...||.|||.||.|..|||.|||| || ||.||| ||||
BPUM_1624___m 396 TGAAAAAAGTGACCCTGCTTTTAGAGA-AG-----AAATGG-CGCTTTTT 438
BSNT_02788___ 403 ---GAGCGGGAAGGCGCTGACTTTCTTCATGCCAAAC---TTGCT----G 442
.|||.|.|.|||.| .||||| ||.|.|| ..||| |
BPUM_1624___m 439 GAACAGCAGCATGGCCC------CCTTCA-GCTACACGAAAAGCTAAAGG 481
BSNT_02788___ 443 CAGCAGATCCCGAGGCAGCAGCTGCGATTCATCCGAATAATACAAGAAGA 492
|.|.|||.||.||.||.|||...||.|||||||||||||||....|..|.
BPUM_1624___m 482 CGGTAGACCCTGATGCTGCAAAAGCCATTCATCCGAATAATGTCCGCCGC 531
BSNT_02788___ 493 GTCATTCGCGCACTGGAAATTTTACATACGTCTGG--AAAAACGATGTCC 540
||.||.||.||.||||||.|..|.|||||..|.|| |.||| |||||
BPUM_1624___m 532 GTGATCCGGGCGCTGGAAGTGATCCATACAACAGGTCAGAAA--ATGTC- 578
BSNT_02788___ 541 CAGCATTTGAAGGAA---CAAA------AACGAGAA---CTTCTGTACAA 578
|||| |||| |.|.|||| |.|||.||..|
BPUM_1624___m 579 -----------GGAAATGCAAAATGGTCATCAAGAAGTTCCTCTTTATGA 617
BSNT_02788___ 579 TGCAGTGTTAATTGGCCTGACAATGGATAGAGACACGCTT---TACGAAA 625
|.|||..||.|||||.||||.||||||..|||| |||| |||||..
BPUM_1624___m 618 TACAGCCTTCATTGGGCTGAAAATGGACCGAGA---GCTTTTGTACGAGC 664
BSNT_02788___ 626 GAATTAATCAGCGGGTCGATTTGATGATGGAGTCAGGCCTTCTTCCGGAA 675
|.|||.|.||..|..|.|||.|||||||.||...||||.|..||..||||
BPUM_1624___m 665 GCATTCACCAAAGAATTGATATGATGATAGATGAAGGCTTAATTGAGGAA 714
BSNT_02788___ 676 GTGAAACGC---TTATACGACAA----GAACGTGAGAGACTGTCAATCAA 718
||| |.||| |||| ||| | |.|||..||.||||||||..
BPUM_1624___m 715 GTG-AGCGCACTTTAT----CAATCTGG--CTTGAAGGATTGTCAATCGG 757
BSNT_02788___ 719 TACAGGCGATAGGCTATAAAGAGCTGTATGCATATTT------TGACGGT 762
|.||.|||||.||.|||||||||.|||||.|.||||| ||||.|.
BPUM_1624___m 758 TTCAAGCGATTGGTTATAAAGAGTTGTATACGTATTTCCAAGGTGACTGC 807
BSNT_02788___ 763 TTTGTGACACTTTCCGATGCTGTCGAACAGC---TAAAGCAGAACTCGAG 809
| |||| .||||..|.|...|||| |||||||.||.||..|
BPUM_1624___m 808 T------CACT---GGATGAAGCCATTCAGCAATTAAAGCAAAATTCCCG 848
BSNT_02788___ 810 GCGGTATGCGAAACGCCAGCTGACGTGGTTTCGCAACAAAATGCAGGTCA 859
..|.||||||||.||.|||.|.||||||||.||.||.||||||.|.||||
BPUM_1624___m 849 TAGATATGCGAAGCGTCAGTTCACGTGGTTCCGTAATAAAATGGATGTCA 898
BSNT_02788___ 860 CATGGTTCGATATGACACCGCCTGTTGATATGGAGCT-------GAAAAA 902
|.||||||||.|||||||||||| ||...|| .|||||
BPUM_1624___m 899 CTTGGTTCGACATGACACCGCCT-------TGCCACTTTTCAGACAAAAA 941
BSNT_02788___ 903 AAAGGAAATTTTCACACATATAGCAGGAAAACTCGAACTTTAA------- 945
|.|||||||||||.||.|||||||||||||.||.|.||||.||
BPUM_1624___m 942 AGAGGAAATTTTCGCATATATAGCAGGAAAGCTTGGACTTAAAGCGAAAC 991
BSNT_02788___ 945 ----- 945
BPUM_1624___m 992 TGTAG 996
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