Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02783 and BPUM_1618
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:25
# Commandline: needle
# -asequence dna-align/BSNT_02783___ymaD.1.24716.seq
# -bsequence dna-align/BPUM_1618___ymaD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02783___ymaD-BPUM_1618___ymaD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02783___ymaD-BPUM_1618___ymaD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02783___ymaD
# 2: BPUM_1618___ymaD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 485
# Identity: 315/485 (64.9%)
# Similarity: 315/485 (64.9%)
# Gaps: 67/485 (13.8%)
# Score: 931.5
#
#
#=======================================
BSNT_02783___ 1 ATGGCAGATCATCATTTTTATTTAAAAGCGAATTGGCCGGGTAACCGCAA 50
|||||..|.|||||||||.||.|..|.||||.||||||.||....||.||
BPUM_1618___y 1 ATGGCGCAACATCATTTTCATCTTCAGGCGAGTTGGCCTGGCCTGCGTAA 50
BSNT_02783___ 51 TGATGTCGGTACGAT------TGAA-AGCGGAAACCTGATCACATCGATT 93
.|||||.|||||.|| |||| ||...||| |||..||||
BPUM_1618___y 51 CGATGTGGGTACAATCTCATGTGAACAGTTAAAA-------ACAAAGATT 93
BSNT_02783___ 94 TCCATTCCTAAAGAAATGGATGGCCCGGGAGAAGGGACCAACCCAGATGA 143
||.|||||.|||||||||||.||.||.||....||.||.||.||||||||
BPUM_1618___y 94 TCAATTCCAAAAGAAATGGACGGTCCTGGCATTGGAACAAATCCAGATGA 143
BSNT_02783___ 144 AATGCTTCTCGGGGCGGCAGCGACCTGTTACATTATTACACTTGCAGCGA 193
.|||||..|.||.||.||.||.||.|||||.||||||||||||||.||.|
BPUM_1618___y 144 GATGCTCTTAGGTGCCGCGGCTACGTGTTATATTATTACACTTGCCGCTA 193
BSNT_02783___ 194 TGATGGAGAGAAGCGGGCTGGAAAAAGAAGA-CTTACAGATGGAG-TCAG 241
||||||||.|.||.....|.||||||||.|| ||.|| ||| ||| ||.|
BPUM_1618___y 194 TGATGGAGCGGAGTCAATTAGAAAAAGAGGATCTCAC-GAT-GAGTTCTG 241
BSNT_02783___ 242 AAGGC-ATTGTCGACGTCACAAAAGGAGTCTTTACATACAAAAAGATCAT 290
|||| .|.|||||.||.||.||.||.||.||||||||..||||.|||||
BPUM_1618___y 242 -AGGCGGTCGTCGATGTAACGAATGGTGTGTTTACATATGAAAAAATCAT 290
BSNT_02783___ 291 TCACCGTCCCTCTG---TCGTGCTTAAA-CATGATGCTT---CACAAGAC 333
||||||.| ||| ||.|.||.||| ||| .||||| |.|||||
BPUM_1618___y 291 TCACCGGC---CTGTCATCATCCTCAAAGCAT-CTGCTTCTCCGCAAGA- 335
BSNT_02783___ 334 GACGTCGCATTG-----GCGCACAAGCTTTGTAAAAAAGCGGAGTCGTCA 378
.|||| ||.|.||||||.....|.|||||.||....|||
BPUM_1618___y 336 -------TATTGAACTTGCACGCAAGCTCGCGCACAAAGCCGAAAGCTCA 378
BSNT_02783___ 379 TGCATGATTTCGCGTGCAATTCAAGGAAATGTCG----TGCTGCAGCTT- 423
||.|||||.||..|.||..|||||||.|||||.| |.| |||
BPUM_1618___y 379 TGTATGATCTCAAGAGCTGTTCAAGGTAATGTGGACATTTC-----CTTA 423
BSNT_02783___ 424 ---GAAGCC--TCTGTGAAACTGGGTGGAGAATAA 453
|||.|| || ||||.||.|||.||
BPUM_1618___y 424 GAAGAAACCATTC-----AACTAGGCGGATAA--- 450
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