Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02782 and BPUM_1617
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:25
# Commandline: needle
# -asequence dna-align/BSNT_02782___ymaC.1.24716.seq
# -bsequence dna-align/BPUM_1617.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02782___ymaC-BPUM_1617.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02782___ymaC-BPUM_1617.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02782___ymaC
# 2: BPUM_1617
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 855
# Identity: 455/855 (53.2%)
# Similarity: 455/855 (53.2%)
# Gaps: 267/855 (31.2%)
# Score: 1096.5
#
#
#=======================================
BSNT_02782___ 1 ATG-AGAAGATTTTTACTAAATGTCATATTAGTCTTAGCCATTGTCTTGT 49
||| |||||.||||| .|||.|| ||.||.||
BPUM_1617 1 ATGAAGAAGTTTTTT-----------------GCTTTGC--TTCTCCTG- 30
BSNT_02782___ 50 TCTTAAGAT---AT-----GTTCATTACTCATT---------GGAACCTG 82
|||..||| || |||.||||..||.| |||||.||
BPUM_1617 31 -CTTGCGATCGGATGGGGCGTTTATTATACAATGCAAGCACAGGAACATG 79
BSNT_02782___ 83 AACCATCAAATCAGCCAGATACATATTCAAATTTCAGCAGCTTAGCAGAG 132
||.|||||| |.|||.|||.| |..||.
BPUM_1617 80 ---------ATGAGCCAG-------------TGTCATCAGGT--GGGGAA 105
BSNT_02782___ 133 AATGAGAGCCCAGCCGATT--AC-GATATTT----CA--TATAATGA--- 170
.|.||.|| ||.|| || ||||||| || |.|||.||
BPUM_1617 106 GACGAAAG------CGGTTCAACTGATATTTATCGCAATTTTAAAGAACT 149
BSNT_02782___ 171 -GAA-AAAAGGAAGCA---------------------------------- 184
||| ||||.|||.||
BPUM_1617 150 GGAAGAAAACGAATCAACAAGCAGCTATCAAATTACAGCCAACCCAGTAC 199
BSNT_02782___ 185 ----AAG------TCTTAATTATGTCTCCGCATGGCGGAAGAATTGAAGG 224
||| |||| .|.|||||.||.||||||||.|||||||||||
BPUM_1617 200 CTGGAAGCCGCCTTCTT-GTGATGTCACCCCATGGCGGGAGAATTGAAGG 248
BSNT_02782___ 225 CGGAGTAAGTGAGCTTGTTCGTTATTTCAATAATGAATACTCTACATACC 274
|||.||.||.|||.|.||.|.||.|||..|||||||.|.||||||.||..
BPUM_1617 249 CGGCGTGAGCGAGATCGTCCATTTTTTTGATAATGATTTCTCTACGTATT 298
BSNT_02782___ 275 TGTTTGAAGGGTTGAAGTCCCACGATAA-----CCAAACGCTGCACATTA 319
|||||||| ||||.||| .||.|| |..|| ||.||..|.|
BPUM_1617 299 TGTTTGAA-GGTTTAAG-----AGAGAATGCATCAGAA--CTTCATGTGA 340
BSNT_02782___ 320 CAAGCACCAACTTTGATGAGCCATT------------GGCAAAAAAGAAA 357
||||.||.|||||||||||||||.| ||||||
BPUM_1617 341 CAAGTACAAACTTTGATGAGCCAGTCGGTGTCGCACAGGCAAA------- 383
BSNT_02782___ 358 ATCAAGGAGCATCA-----ATATGTGGTGGCTTTTCACGGATATAAAGGG 402
|||| || ||||.| |.||..|.||.||.||.|||||.
BPUM_1617 384 -------AGCA-CACGATTATATAT--TAGCAGTGCATGGGTACAAAGGT 423
BSNT_02782___ 403 GAGAA---CA---AGAATACGCTTGTCGGGGGAACAGA--CCGAAAGCGG 444
|||.| || |..|||||||.||.||.|||||||| .|| |.||.
BPUM_1617 424 GAGGAAGGCATTGACCATACGCTCGTTGGTGGAACAGATTACG--ACCGT 471
BSNT_02782___ 445 GC-GAAAATGATTGTGAGAGCCCTT-GAGCGGAGAGGGTTTTCCGCTGAG 492
|| ||||| .||.|||| |..|.|| |||||||..||.|||||.|||||.
BPUM_1617 472 GCAGAAAA-AATAGTGA-ACTCATTAGAGCGGAACGGATTTTCAGCTGAA 519
BSNT_02782___ 493 TTAGC-GTCG---TCTAAA-----AGCGG-TCTTGCTGGATTGAATGCCG 532
.|.|| |||| .|..|| ||||| .|..|| ||| .
BPUM_1617 520 CTGGCTGTCGCACACGCAACCCTGAGCGGAACAAGC-------AAT---C 559
BSNT_02782___ 533 AAAACATTAATAA----CCAAGGGGAAACGGGGCTAAGTATCCAGCTGGA 578
|.||.|||||||| .||| ||||.||||.||||.|.|||.|.||
BPUM_1617 560 ATAATATTAATAATCTTACAA----AAACAGGGCAAAGTGTACAGTTAGA 605
BSNT_02782___ 579 AATCAGCCGTGAG-CAGAGAGAAGCATTTTTTGATGATTTTTATTATAAA 627
.||.||..| .|| |||.|.|||||.||.|||||...||||.|.|
BPUM_1617 606 GATTAGTAG-AAGTCAGCGTGAAGCTTTATTTGACAGTTTTGACT----- 649
BSNT_02782___ 628 AATAGAAAATAC--------------ACAAAGAACAGTGAATTTTATGCT 663
|.| |||||.||| |.||..|| ||
BPUM_1617 650 ---------TTCGTCGGCGGTCGAGTACAAAAAAC-GAGACGTT----CT 685
BSNT_02782___ 664 -----TATGTCAGTGCGAT-----CAAAGGTGTCCTGGAAAAAGAGTATT 703
||||||||.||||| || ||.|||||..|.||.|||.
BPUM_1617 686 ACCGGTATGTCAGAGCGATTCGGACA-----GTGCTGGATGAGGAATATA 730
BSNT_02782___ 704 TGTAA 708
..|||
BPUM_1617 731 CATAA 735
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