Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02780 and BPUM_1616
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:25
# Commandline: needle
# -asequence dna-align/BSNT_02780.1.24716.seq
# -bsequence dna-align/BPUM_1616___aprX.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02780-BPUM_1616___aprX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02780-BPUM_1616___aprX.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02780
# 2: BPUM_1616___aprX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1413
# Identity: 814/1413 (57.6%)
# Similarity: 814/1413 (57.6%)
# Gaps: 327/1413 (23.1%)
# Score: 2429.5
#
#
#=======================================
BSNT_02780 0 -------------------------------------------------- 0
BPUM_1616___a 1 ATGTTTGGATTTTCTATGGTACAAATGGTCAGAACACATGCTAGTAAACT 50
BSNT_02780 0 -------------------------------------------------- 0
BPUM_1616___a 51 GGATCAACCTTTAAGAGAGACCGTCCTTCACCTTTATAAGCCTTTTAAAT 100
BSNT_02780 0 -------------------------------------------------- 0
BPUM_1616___a 101 GGACACCATGCTTTCTTCATCGTTACTTTGAAGGAAGATTAAAGAAGAGG 150
BSNT_02780 1 ---ATG--TC-AGTCATTATCGAATTTGAGGAAG--GCTGTCACGAGACC 42
|.| || .||.|||||.||||||.|||||| ||.|| |||..|.
BPUM_1616___a 151 AAGAAGCTTCGTGTGATTATTGAATTTAAGGAAGACGCGGT--CGAAGCA 198
BSNT_02780 43 GGCTTTCAAATGGCTGGAGAGGTGCTGCAAAA-AG-------AAAAACGC 84
||..|||||| || .||||| || |||||.||
BPUM_1616___a 199 GGAATTCAAA-------------GC-ACAAAACAGCTCATGAAAAAAAGC 234
BSNT_02780 85 AGCAAGCTAAAAAGCCGCTTCAACAAA------------ATCAACTGCTG 122
||.||...|||.| ||||.||| |||.|||||||
BPUM_1616___a 235 AGAAAAACAAATA------TCAAAAAACACTTTTCACATATCGACTGCTG 278
BSNT_02780 123 CAGC-GCCGAGGTTACTCCTTCAGCATTACATTCCCTT--------CTCT 163
.|| ||.||..|.||.| |||| |.||| ||.|
BPUM_1616___a 279 -TGCTGCAGACCTAACAC---CAGC--------CGCTTTAGAGGAGCTGT 316
BSNT_02780 164 CTG---AATG--CAGCAATATCCGTAAAGTGTATTTAAACCGCGAAGTCA 208
|| |||| .||| ||||.||||||.|.||||||.||||.|||||..
BPUM_1616___a 317 -TGGCAAATGGTGAGC-ATATTCGTAAAATTTATTTAGACCGGGAAGTTC 364
BSNT_02780 209 AAGCGCTTTTAGACACTGCAACCGAAGCAAGCCATGCGAAGGAAGTCGTC 258
|.||||||.|.||....||.||..|||||||.||.|||.|.||||||.||
BPUM_1616___a 365 ATGCGCTTCTGGATGTAGCCACACAAGCAAGTCACGCGGATGAAGTCATC 414
BSNT_02780 259 AGAAACGGGCA-AACCCTGACAGGAAAAGGTGTTACTGTCGCTGTTGTCG 307
.||||| |||| |.||.|.|||||..|||||.||||.||||||||..|.|
BPUM_1616___a 415 CGAAAC-GGCACAGCCTTAACAGGGGAAGGTATTACGGTCGCTGTCATTG 463
BSNT_02780 308 ATACAGGAATCTACCCGCATCCTGATCTAGAAGGCAGAATTATCGGATTC 357
||||||||||.||.||||||...|||.||||.||.||||||..||..||.
BPUM_1616___a 464 ATACAGGAATTTATCCGCATGAAGATGTAGATGGAAGAATTCGCGATTTT 513
BSNT_02780 358 GCGGACATGGTCAATCAAAAAACAGAGCCGTACGATGATAATGGTCATGG 407
|.||||.|.|||||.||.||||.|.||||.||.||||||||.||.|||||
BPUM_1616___a 514 GTGGACTTAGTCAAGCAGAAAAAAAAGCCATATGATGATAACGGACATGG 563
BSNT_02780 408 CACACACTGTGCAGGTGATGTCGC-----AAGCAGCGGCGCATCCT---- 448
|||.|||||.||.||.|||||.|| |.|.||||| |||
BPUM_1616___a 564 CACTCACTGCGCTGGAGATGTAGCTGGAGACGGAGCGG-----CCTCAGA 608
BSNT_02780 449 ---CTTCCGGT-CAATACCGCGGCCCTGCACCGGAAGCCAATCTCATCGG 494
||| || ||| .||.|||||.||..||||..||.|.||.||
BPUM_1616___a 609 TGGCTT---GTACAA-----AGGACCTGCTCCAAAAGCTCATTTAATTGG 650
BSNT_02780 495 CGTAAAGGTATTAAACAAGCAGGGTTCAGGA--ACGTTAGCAGATATTAT 542
|||.||.||.|||||.||.||.||..|.||| ||.|| |...||||||
BPUM_1616___a 651 CGTGAAAGTGTTAAATAAACAAGGGGCTGGATCACTTT--CTACTATTAT 698
BSNT_02780 543 AGAGGGTGTTGAGTGGTGTATTCAATACAATGAGGACAACCCCGATGAAC 592
|||.||.|||||.|||||.|||||.|.||||||.||..||||.|||||.|
BPUM_1616___a 699 AGAAGGGGTTGAATGGTGCATTCAGTTCAATGAAGATCACCCTGATGATC 748
BSNT_02780 593 CGATTGATATTATTAGCATGTCGCTCGGGGGCGATGCCCTTAGATATGAT 642
|||||.|||||||.||.|||||..|.||.||.|||||.|...|.||||||
BPUM_1616___a 749 CGATTCATATTATGAGTATGTCATTAGGTGGAGATGCTCAGCGTTATGAT 798
BSNT_02780 643 CATGAACAGGAAGATCCGTTAGTCAGAGCGGTTGAGGAAGCGT-GGAGCG 691
.|.|||||.||.||||||.|.||..|.||.||..|.|..||.| |||.|
BPUM_1616___a 799 GACGAACAAGACGATCCGATGGTGCGTGCTGTCAATGCTGCTTGGGATC- 847
BSNT_02780 692 CAGGGATTGTCGTCTGTGTCGCTGCCGGAAACTCAGGCCCTGATTCGCAG 741
.|||.||||||||.||.||||||||||||||||||||.|||.| |||
BPUM_1616___a 848 AAGGCATTGTCGTATGCGTCGCTGCCGGAAACTCAGGTCCTAA----CAG 893
BSNT_02780 742 ----ACCATTGCAAGCCCGGGCGTGAGCGAAAAGGTGATTACAGTAGGTG 787
||.|||||.|||||.|.|||.||..||||.||||||||.||.||.|
BPUM_1616___a 894 CCAAACGATTGCGAGCCCTGCCGTCAGTCAAAAAGTGATTACGGTTGGCG 943
BSNT_02780 788 CGCTTGACGATAACAATACTGC--AAGCAGCGATGATGATACTGTCGCTT 835
|..||||.||...||||||..| ||.|| .|.|||||||.|||.||..
BPUM_1616___a 944 CTTTTGATGACCGCAATACACCAGAATCA--AACGATGATATTGTGGCAC 991
BSNT_02780 836 CCTTCTCAAGCCGCGGCCCGACAGTATATGG-GAAAGAAAAGCCCGATAT 884
|.||.||||||.|.||.||.||.||.||||| ||.|.|||| ||.|||||
BPUM_1616___a 992 CATTTTCAAGCAGAGGTCCTACTGTTTATGGTGAGACAAAA-CCTGATAT 1040
BSNT_02780 885 TTTAGCGCCGGGTGTTAATATTATTTCCCTTCGCTCTCCGA--------A 926
..|.||.||.||.||.||.|| |.||.|||||||| |
BPUM_1616___a 1041 CCTTGCACCAGGAGTAAACAT-------CGTCTCTCTCCGATCACCAAGA 1083
BSNT_02780 927 TTCTTATATTGATAAGCTCCAAAAGTCAAGCCGTGTAGGGTC-----TCA 971
|.||| |.|.|||||.|||.|.||.|||||| ||.||| |.|
BPUM_1616___a 1084 TCCTT-TCTAGATAAACTCGACAAATCAAGC-----AGAGTCGATGATGA 1127
BSNT_02780 972 GTACTTTACAATGTCAGGAACCTCGATGGCAACACCGATTTGCGCAGGAA 1021
.|||...|||.|.||.||.||.||.|||||||||||.|||||||||||.|
BPUM_1616___a 1128 TTACACGACATTATCTGGTACATCTATGGCAACACCAATTTGCGCAGGTA 1177
BSNT_02780 1022 TCGCAGCTTTAATTCTTCAGCA--CAACCCGGATCTTACCCCTGATGAAG 1069
|....|||.||||..|..|||| || ||.|||...||.||||||||.|
BPUM_1616___a 1178 TTTGTGCTCTAATATTAGAGCATTCA--CCTGATTCAACGCCTGATGAGG 1225
BSNT_02780 1070 TAAAAGAGCTTTT-----GAAAAACGGCACGGACAAATGGAAAGATGAAG 1114
|.||| |.|.|.| ||||| .|||..|||.|||...|..||.|
BPUM_1616___a 1226 TCAAA-ACCATGTTAAAAGAAAA----TACGAGCAAGTGGTCTGGGGATG 1270
BSNT_02780 1115 ATCCGAATATCTACGGAGCGGGCGCTGTCAACGCAGAAAATTCCGTTCCC 1164
||||||..||.||||||||.||.||..|..||||||||||..||.|
BPUM_1616___a 1271 ATCCGACGATATACGGAGCAGGTGCCATTGACGCAGAAAAAGCCAT---- 1316
BSNT_02780 1165 GGCC----AATAA 1173
| |||||
BPUM_1616___a 1317 ---CAAAGAATAA 1326
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