Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02780 and BPUM_1616

See Amino acid alignment / Visit BSNT_02780 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:25
# Commandline: needle
#    -asequence dna-align/BSNT_02780.1.24716.seq
#    -bsequence dna-align/BPUM_1616___aprX.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02780-BPUM_1616___aprX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02780-BPUM_1616___aprX.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02780
# 2: BPUM_1616___aprX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1413
# Identity:     814/1413 (57.6%)
# Similarity:   814/1413 (57.6%)
# Gaps:         327/1413 (23.1%)
# Score: 2429.5
# 
#
#=======================================

BSNT_02780         0 --------------------------------------------------      0
                                                                       
BPUM_1616___a      1 ATGTTTGGATTTTCTATGGTACAAATGGTCAGAACACATGCTAGTAAACT     50

BSNT_02780         0 --------------------------------------------------      0
                                                                       
BPUM_1616___a     51 GGATCAACCTTTAAGAGAGACCGTCCTTCACCTTTATAAGCCTTTTAAAT    100

BSNT_02780         0 --------------------------------------------------      0
                                                                       
BPUM_1616___a    101 GGACACCATGCTTTCTTCATCGTTACTTTGAAGGAAGATTAAAGAAGAGG    150

BSNT_02780         1 ---ATG--TC-AGTCATTATCGAATTTGAGGAAG--GCTGTCACGAGACC     42
                        |.|  || .||.|||||.||||||.||||||  ||.||  |||..|.
BPUM_1616___a    151 AAGAAGCTTCGTGTGATTATTGAATTTAAGGAAGACGCGGT--CGAAGCA    198

BSNT_02780        43 GGCTTTCAAATGGCTGGAGAGGTGCTGCAAAA-AG-------AAAAACGC     84
                     ||..||||||             || .||||| ||       |||||.||
BPUM_1616___a    199 GGAATTCAAA-------------GC-ACAAAACAGCTCATGAAAAAAAGC    234

BSNT_02780        85 AGCAAGCTAAAAAGCCGCTTCAACAAA------------ATCAACTGCTG    122
                     ||.||...|||.|      ||||.|||            |||.|||||||
BPUM_1616___a    235 AGAAAAACAAATA------TCAAAAAACACTTTTCACATATCGACTGCTG    278

BSNT_02780       123 CAGC-GCCGAGGTTACTCCTTCAGCATTACATTCCCTT--------CTCT    163
                      .|| ||.||..|.||.|   ||||        |.|||        ||.|
BPUM_1616___a    279 -TGCTGCAGACCTAACAC---CAGC--------CGCTTTAGAGGAGCTGT    316

BSNT_02780       164 CTG---AATG--CAGCAATATCCGTAAAGTGTATTTAAACCGCGAAGTCA    208
                      ||   ||||  .||| ||||.||||||.|.||||||.||||.|||||..
BPUM_1616___a    317 -TGGCAAATGGTGAGC-ATATTCGTAAAATTTATTTAGACCGGGAAGTTC    364

BSNT_02780       209 AAGCGCTTTTAGACACTGCAACCGAAGCAAGCCATGCGAAGGAAGTCGTC    258
                     |.||||||.|.||....||.||..|||||||.||.|||.|.||||||.||
BPUM_1616___a    365 ATGCGCTTCTGGATGTAGCCACACAAGCAAGTCACGCGGATGAAGTCATC    414

BSNT_02780       259 AGAAACGGGCA-AACCCTGACAGGAAAAGGTGTTACTGTCGCTGTTGTCG    307
                     .||||| |||| |.||.|.|||||..|||||.||||.||||||||..|.|
BPUM_1616___a    415 CGAAAC-GGCACAGCCTTAACAGGGGAAGGTATTACGGTCGCTGTCATTG    463

BSNT_02780       308 ATACAGGAATCTACCCGCATCCTGATCTAGAAGGCAGAATTATCGGATTC    357
                     ||||||||||.||.||||||...|||.||||.||.||||||..||..||.
BPUM_1616___a    464 ATACAGGAATTTATCCGCATGAAGATGTAGATGGAAGAATTCGCGATTTT    513

BSNT_02780       358 GCGGACATGGTCAATCAAAAAACAGAGCCGTACGATGATAATGGTCATGG    407
                     |.||||.|.|||||.||.||||.|.||||.||.||||||||.||.|||||
BPUM_1616___a    514 GTGGACTTAGTCAAGCAGAAAAAAAAGCCATATGATGATAACGGACATGG    563

BSNT_02780       408 CACACACTGTGCAGGTGATGTCGC-----AAGCAGCGGCGCATCCT----    448
                     |||.|||||.||.||.|||||.||     |.|.|||||     |||    
BPUM_1616___a    564 CACTCACTGCGCTGGAGATGTAGCTGGAGACGGAGCGG-----CCTCAGA    608

BSNT_02780       449 ---CTTCCGGT-CAATACCGCGGCCCTGCACCGGAAGCCAATCTCATCGG    494
                        |||   || |||     .||.|||||.||..||||..||.|.||.||
BPUM_1616___a    609 TGGCTT---GTACAA-----AGGACCTGCTCCAAAAGCTCATTTAATTGG    650

BSNT_02780       495 CGTAAAGGTATTAAACAAGCAGGGTTCAGGA--ACGTTAGCAGATATTAT    542
                     |||.||.||.|||||.||.||.||..|.|||  ||.||  |...||||||
BPUM_1616___a    651 CGTGAAAGTGTTAAATAAACAAGGGGCTGGATCACTTT--CTACTATTAT    698

BSNT_02780       543 AGAGGGTGTTGAGTGGTGTATTCAATACAATGAGGACAACCCCGATGAAC    592
                     |||.||.|||||.|||||.|||||.|.||||||.||..||||.|||||.|
BPUM_1616___a    699 AGAAGGGGTTGAATGGTGCATTCAGTTCAATGAAGATCACCCTGATGATC    748

BSNT_02780       593 CGATTGATATTATTAGCATGTCGCTCGGGGGCGATGCCCTTAGATATGAT    642
                     |||||.|||||||.||.|||||..|.||.||.|||||.|...|.||||||
BPUM_1616___a    749 CGATTCATATTATGAGTATGTCATTAGGTGGAGATGCTCAGCGTTATGAT    798

BSNT_02780       643 CATGAACAGGAAGATCCGTTAGTCAGAGCGGTTGAGGAAGCGT-GGAGCG    691
                     .|.|||||.||.||||||.|.||..|.||.||..|.|..||.| |||.| 
BPUM_1616___a    799 GACGAACAAGACGATCCGATGGTGCGTGCTGTCAATGCTGCTTGGGATC-    847

BSNT_02780       692 CAGGGATTGTCGTCTGTGTCGCTGCCGGAAACTCAGGCCCTGATTCGCAG    741
                     .|||.||||||||.||.||||||||||||||||||||.|||.|    |||
BPUM_1616___a    848 AAGGCATTGTCGTATGCGTCGCTGCCGGAAACTCAGGTCCTAA----CAG    893

BSNT_02780       742 ----ACCATTGCAAGCCCGGGCGTGAGCGAAAAGGTGATTACAGTAGGTG    787
                         ||.|||||.|||||.|.|||.||..||||.||||||||.||.||.|
BPUM_1616___a    894 CCAAACGATTGCGAGCCCTGCCGTCAGTCAAAAAGTGATTACGGTTGGCG    943

BSNT_02780       788 CGCTTGACGATAACAATACTGC--AAGCAGCGATGATGATACTGTCGCTT    835
                     |..||||.||...||||||..|  ||.||  .|.|||||||.|||.||..
BPUM_1616___a    944 CTTTTGATGACCGCAATACACCAGAATCA--AACGATGATATTGTGGCAC    991

BSNT_02780       836 CCTTCTCAAGCCGCGGCCCGACAGTATATGG-GAAAGAAAAGCCCGATAT    884
                     |.||.||||||.|.||.||.||.||.||||| ||.|.|||| ||.|||||
BPUM_1616___a    992 CATTTTCAAGCAGAGGTCCTACTGTTTATGGTGAGACAAAA-CCTGATAT   1040

BSNT_02780       885 TTTAGCGCCGGGTGTTAATATTATTTCCCTTCGCTCTCCGA--------A    926
                     ..|.||.||.||.||.||.||       |.||.||||||||        |
BPUM_1616___a   1041 CCTTGCACCAGGAGTAAACAT-------CGTCTCTCTCCGATCACCAAGA   1083

BSNT_02780       927 TTCTTATATTGATAAGCTCCAAAAGTCAAGCCGTGTAGGGTC-----TCA    971
                     |.||| |.|.|||||.|||.|.||.||||||     ||.|||     |.|
BPUM_1616___a   1084 TCCTT-TCTAGATAAACTCGACAAATCAAGC-----AGAGTCGATGATGA   1127

BSNT_02780       972 GTACTTTACAATGTCAGGAACCTCGATGGCAACACCGATTTGCGCAGGAA   1021
                     .|||...|||.|.||.||.||.||.|||||||||||.|||||||||||.|
BPUM_1616___a   1128 TTACACGACATTATCTGGTACATCTATGGCAACACCAATTTGCGCAGGTA   1177

BSNT_02780      1022 TCGCAGCTTTAATTCTTCAGCA--CAACCCGGATCTTACCCCTGATGAAG   1069
                     |....|||.||||..|..||||  ||  ||.|||...||.||||||||.|
BPUM_1616___a   1178 TTTGTGCTCTAATATTAGAGCATTCA--CCTGATTCAACGCCTGATGAGG   1225

BSNT_02780      1070 TAAAAGAGCTTTT-----GAAAAACGGCACGGACAAATGGAAAGATGAAG   1114
                     |.||| |.|.|.|     |||||    .|||..|||.|||...|..||.|
BPUM_1616___a   1226 TCAAA-ACCATGTTAAAAGAAAA----TACGAGCAAGTGGTCTGGGGATG   1270

BSNT_02780      1115 ATCCGAATATCTACGGAGCGGGCGCTGTCAACGCAGAAAATTCCGTTCCC   1164
                     ||||||..||.||||||||.||.||..|..||||||||||..||.|    
BPUM_1616___a   1271 ATCCGACGATATACGGAGCAGGTGCCATTGACGCAGAAAAAGCCAT----   1316

BSNT_02780      1165 GGCC----AATAA   1173
                        |    |||||
BPUM_1616___a   1317 ---CAAAGAATAA   1326


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