Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02754 and BPUM_1608
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:25
# Commandline: needle
# -asequence dna-align/BSNT_02754___mutS.1.24716.seq
# -bsequence dna-align/BPUM_1608___mutS1.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02754___mutS-BPUM_1608___mutS1.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02754___mutS-BPUM_1608___mutS1.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02754___mutS
# 2: BPUM_1608___mutS1
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2673
# Identity: 1943/2673 (72.7%)
# Similarity: 1943/2673 (72.7%)
# Gaps: 192/2673 ( 7.2%)
# Score: 6849.5
#
#
#=======================================
BSNT_02754___ 1 ATGGCCGGTTATACGCCTATGATACAGCAATATTTAAAAATAAAGGCAGA 50
|||||..||||||||||.||||||||||||||||||||.||.||||||||
BPUM_1608___m 1 ATGGCAAGTTATACGCCCATGATACAGCAATATTTAAACATCAAGGCAGA 50
BSNT_02754___ 51 GCACCAGGATGCCTTTTTATTTTTTCGCCTGGGTGATTTTTACGAAATGT 100
|.|.||.|||||||||||||||||||||.|.||.||||||||.|||||||
BPUM_1608___m 51 GTATCAAGATGCCTTTTTATTTTTTCGCTTAGGCGATTTTTATGAAATGT 100
BSNT_02754___ 101 TTTTTGAGGACGCCAAAAAAGCGTCACAAGAGCTGGAAATTACGTTAACG 150
|||||||.|||||.|||.|||||||||||||..|.|||||||||.||||.
BPUM_1608___m 101 TTTTTGATGACGCAAAAGAAGCGTCACAAGAATTAGAAATTACGCTAACA 150
BSNT_02754___ 151 AGCAGAGATGGCGGTGCGGCTGAAAAAATACCGATGTGCGGTGTGCCGTA 200
||.||||||||.|| .|..|||||.|||||.|||||.||.||
BPUM_1608___m 151 AGTAGAGATGGGGG---------GACCATACCAATGTGTGGTGTTCCTTA 191
BSNT_02754___ 201 TCATTCTGCTTCCGCGTATATCGAACAGCTTATTAAAAAAGGATACAAAG 250
||||||||||||.||.||.||.|||||..|.|||..||||||.|||||.|
BPUM_1608___m 192 TCATTCTGCTTCTGCATACATAGAACAATTGATTTCAAAAGGCTACAAGG 241
BSNT_02754___ 251 TGGCGATCTGTGAACAGACGGAAGATCCGAAAGCCGCAAAGGGCGTTGTG 300
|.||.||.|||||.|||..|||||||||.|||.|.|||||.||.||.||.
BPUM_1608___m 242 TCGCAATTTGTGAGCAGGTGGAAGATCCTAAAACGGCAAAAGGTGTAGTC 291
BSNT_02754___ 301 AAAAGAGAAGTGGTTCAGCTGATTACGCCCGGAACTGTAATGGACGGCAA 350
|||||||||||.|||||.||.|||||.||.||.||.||.|||||.||.||
BPUM_1608___m 292 AAAAGAGAAGTCGTTCAACTCATTACACCAGGTACGGTGATGGAAGGAAA 341
BSNT_02754___ 351 AGGCATCCATGAATCGGAAAATAACTTTATCGCATCTGTTTCAGCCTGCT 400
|||..|...||||...|||||.|||||.||.||.|||||..|| ..|.|
BPUM_1608___m 342 AGGTTTAAGTGAAAATGAAAACAACTTCATTGCCTCTGTGACA--AAGTT 389
BSNT_02754___ 401 CGAACA--GATACGGACTTGCGCTGTCTGATTTAACAACGGGAGAAAATT 448
.|||.| |.||.||||||||.||.||.||||||.|.||.||.|||||..
BPUM_1608___m 390 TGAAAATGGGTATGGACTTGCACTTTCCGATTTATCTACTGGTGAAAACA 439
BSNT_02754___ 449 TGGCTGTTTTGATTGAACGGCTTGAAGACGTCATATCAGAAATTTATTCA 498
||||.|.|||.||.||.||..|.||.||.|||.|.||.|||||||||||.
BPUM_1608___m 440 TGGCGGCTTTCATCGATCGATTAGATGAAGTCGTGTCTGAAATTTATTCT 489
BSNT_02754___ 499 GTCGGCGCACGGGAAATCGTGGTTTCAGGAGGC--TTGGATGCCGATACA 546
|||||.|||...|||||.||.||.||| |.|| .||||||..||.|||
BPUM_1608___m 490 GTCGGTGCAAAAGAAATTGTCGTGTCA--AAGCATCTGGATGAGGAAACA 537
BSNT_02754___ 547 GTGGCACAG--CTGAGA-GAGCGGTGCGGTGCAACAATTTCAATTGAAGA 593
|| || || ||.|.| ||.||.|||...||.||.||||||...|||||
BPUM_1608___m 538 GT--CA-AGACCTTAAAGGAACGATGCCAAGCGACCATTTCATACGAAGA 584
BSNT_02754___ 594 CGGAGA------AACAGACGAA---------CACGT----------AACG 618
..|.|| ||..||.||| |.||| |.||
BPUM_1608___m 585 TAGTGATGAATTAATTGATGAAGCTGAGCGTCTCGTGTCCCGCCTGAGCG 634
BSNT_02754___ 619 ATCATTGAGCACTTAAATAATGAAGATATAACAAAAACATTTCTGCGCTT 668
|.|| ||| ||||| ..||.|||.||...||
BPUM_1608___m 635 AGCA------ACT---------AAGAT-------CGACCTTTTTGACATT 662
BSNT_02754___ 669 ATATACGTATTTGAAAAGAACCCAAAAGCGCAGCCTTGATCATCTTCAGC 718
||||.|.|||||.|.||||||.|||||..|.||.||||||||.|||||||
BPUM_1608___m 663 ATATGCTTATTTAAGAAGAACGCAAAAAAGAAGTCTTGATCACCTTCAGC 712
BSNT_02754___ 719 CCGTGCAGGTGTATGAGCTTGAGGAAGCGATGAAAATTGACTTGTACTCA 768
..||.||.||||.||||||.||..||.|.||||||||||||.|.||||||
BPUM_1608___m 713 AAGTTCAAGTGTTTGAGCTCGAACAAACAATGAAAATTGACCTTTACTCA 762
BSNT_02754___ 769 AAGCGTAATCTGGAGCTGACCGAAACGATTCGTTCGAAAAATAAAAAAGG 818
||.||.|||||.||..|.||.||.||.||.||.||.||||.|||.||.||
BPUM_1608___m 763 AAACGAAATCTTGAATTAACAGAGACAATCCGCTCAAAAAGTAAGAAGGG 812
BSNT_02754___ 819 CTCCCTTTTGTGGCTGCTGGATGAAACAAAAACGGCAATGGGAGGCCGGC 868
|||..|.||.||||||.|.||||||||||||||.||.|||||.||..|||
BPUM_1608___m 813 CTCTTTATTATGGCTGTTAGATGAAACAAAAACAGCGATGGGCGGAAGGC 862
BSNT_02754___ 869 TGCTTAAACAGTGGATTGACCGGCCGCTTA--TCAGAGTCAAT--CAAAT 914
||||.|||||.|||||.||||||||| ||| || |||..| ||.||
BPUM_1608___m 863 TGCTCAAACAATGGATCGACCGGCCG-TTAATTC---GTCTTTCGCACAT 908
BSNT_02754___ 915 CGAAGAGCGCCAAGAAATGGTGGAAACATTGATGTCCCATTTCTTTGAAC 964
..||||.||.||.||||||||..|||..||.|||...|||||||||||||
BPUM_1608___m 909 TAAAGAACGTCAGGAAATGGTTCAAATTTTAATGGATCATTTCTTTGAAC 958
BSNT_02754___ 965 GGGAAGATCTGCGTGAACGTTTAAAAGAAGTGTATGACTTAGAACGCCTT 1014
|.||.|||.||||.|||||.||.||..||||.|||||..|.|||||..|.
BPUM_1608___m 959 GAGAGGATTTGCGGGAACGGTTGAAGCAAGTATATGATCTCGAACGTTTA 1008
BSNT_02754___ 1015 GCCGGCCGCGTTGCATTCGGAAATGTCAATGCCCGGGATTTGATTCAGCT 1064
||.||.|||||.||.||.||.||.||.||||||||.|||.|.||||||.|
BPUM_1608___m 1009 GCAGGACGCGTAGCTTTTGGCAACGTAAATGCCCGTGATCTTATTCAGTT 1058
BSNT_02754___ 1065 GAAGGAATCGTTAAAGCAAGTTCCTGGCATCAAACAGCTGGTTGC-TTCA 1113
.||||||||.|||||||||||.||.|.|||||||.||||.| ||| .|||
BPUM_1608___m 1059 AAAGGAATCCTTAAAGCAAGTGCCAGCCATCAAAGAGCTTG-TGCACTCA 1107
BSNT_02754___ 1114 TTGGCTCATGACAAGGC-----CAAGGAACGTGCAAAGCG-----CATTG 1153
.||.||.|.||.|.||| |||| |||| .||||
BPUM_1608___m 1108 CTGCCTGAGGAAATGGCGAAATCAAG----------AGCGAATGATATTG 1147
BSNT_02754___ 1154 ACCCTTGCGGGGATGTACTTGAA-CTGCTGGAAGAAGCGCTGTACGAAAA 1202
|.|.|||.|..|||.||| |||| .|..|.|||||.|||||.||.|||||
BPUM_1608___m 1148 ATCTTTGTGATGATTTAC-TGAATTTATTAGAAGATGCGCTATATGAAAA 1196
BSNT_02754___ 1203 CCCTCCTTTATCGGTAAAAGAAGGGAACCTGATTAAAGATGGTTATAAT- 1251
.||.||..|..||.||||||||||.||..|.||||||||.||.||.|||
BPUM_1608___m 1197 TCCACCAATGACGTTAAAAGAAGGCAATTTAATTAAAGACGGCTACAATG 1246
BSNT_02754___ 1252 CAAAAGCTT-GATGAATATCGTGATGCAAGCAGAAACGGAAAAGACTGGA 1300
||||| || ||||||||.||||||||.|||.||||.||.||.|||||||
BPUM_1608___m 1247 CAAAA--TTAGATGAATACCGTGATGCTAGCCGAAATGGGAAGGACTGGA 1294
BSNT_02754___ 1301 TTGCCCGCCTGGAACAGCAGGAGCGGGAATACACAGGCATTCGCTCTTTA 1350
||||.||.||.||||||||.||..|.|||||.||||||||||||||||||
BPUM_1608___m 1295 TTGCACGTCTTGAACAGCAAGAAAGAGAATATACAGGCATTCGCTCTTTA 1344
BSNT_02754___ 1351 AAGGTCGGCTTTAATAAAGTTTTCGGTTATTACATTGAAGTGACTAAAGC 1400
||.|||||.|||||||||||.||.||||||||.|||||||||||...|||
BPUM_1608___m 1345 AAAGTCGGGTTTAATAAAGTATTTGGTTATTATATTGAAGTGACACGAGC 1394
BSNT_02754___ 1401 AAACTTGCATTTGCTTGAGGAAGGGCGTTATGAGCGGAAGCAGACGTTAA 1450
.||...|||||||||.|||||||||||||||||..|.||.||.|||.|..
BPUM_1608___m 1395 GAATACGCATTTGCTGGAGGAAGGGCGTTATGAAAGAAAACAAACGCTCG 1444
BSNT_02754___ 1451 CCAATGCCGAGCGCTACATTACACCTGAATTAAAAGAAAAAGAAGCGCTC 1500
|||||||.|||||.||.||||||||||||||.|||||||||||||||||.
BPUM_1608___m 1445 CCAATGCAGAGCGGTATATTACACCTGAATTGAAAGAAAAAGAAGCGCTG 1494
BSNT_02754___ 1501 ATTTTAGAGGCGGAAAATAACATCTGTGAGCTGGAGTACGAGCTGTTTAC 1550
|||.|.|||||.|||...||.||..|.||.|||||.||.||.||.||
BPUM_1608___m 1495 ATTCTTGAGGCAGAATCAAATATTAGCGAACTGGAATATGAACTATT--- 1541
BSNT_02754___ 1551 CG-AGCTACGC-GAGA--AAGTGAAGCAG--TATATTCCGCGGCTGCAGC 1594
|| |||| |.| |||| ||||||| || |||||||||.|..|.||||
BPUM_1608___m 1542 CGCAGCT-CTCAGAGAACAAGTGAA--AGTATATATTCCGAGATTACAGC 1588
BSNT_02754___ 1595 AGCTTGCAAAACAGATGAGCGAGCTGGACGCACTGCAATGCTTTGCGACA 1644
.|||.||||||||.|||||.|||||||||||.||.||||||||||||||.
BPUM_1608___m 1589 TGCTCGCAAAACAAATGAGTGAGCTGGACGCTCTCCAATGCTTTGCGACT 1638
BSNT_02754___ 1645 ATCAGTGAAAATCGTCACTACA--CGAAACCAGAGTTCTCTAAAGATGAA 1692
.||||||||||.||.|..||.| || .|||||.|||||..|.|||||.
BPUM_1608___m 1639 GTCAGTGAAAAGCGCCGTTATATCCG--TCCAGAATTCTCCGAGGATGAG 1686
BSNT_02754___ 1693 GTCGAAGTGATTGAAGGCAGACACCCGGTTGTTGAAAAAGTCATGGA-CA 1741
||.||.||.||.||.||..|.||.||.||.|||||||||||.||||| ||
BPUM_1608___m 1687 GTAGATGTCATAGATGGTCGTCATCCAGTCGTTGAAAAAGTGATGGATCA 1736
BSNT_02754___ 1742 GCCAGGAATATGTCCCGAATAACTGT-ATGATGGGCGATAACAGACAAAT 1790
||||||.|||||.||||||.||||| || |||||..||..|.|.||||
BPUM_1608___m 1737 -CCAGGAGTATGTACCGAATGACTGTCAT-ATGGGAAATGGCCGGCAAA- 1783
BSNT_02754___ 1791 GCTT-CTCATTACAGGTCCAAACATGTCAGGGAAAAGCACGTATATGAGA 1839
.||| ||||||||.||.||.||.||||||||||||||.||||||||||||
BPUM_1608___m 1784 CCTTGCTCATTACTGGACCGAATATGTCAGGGAAAAGTACGTATATGAGA 1833
BSNT_02754___ 1840 CAAATCGCGCTCATTTCCATTATGGCGCAAATCGGCTGCTTTGTACCCGC 1889
|||||.||.||.||.||.|||.|.||||||||.||.||||||||.||.||
BPUM_1608___m 1834 CAAATGGCACTTATCTCTATTCTTGCGCAAATTGGTTGCTTTGTGCCGGC 1883
BSNT_02754___ 1890 GAAAAAAGCGGTGCTTCCGATTTTCGATCAAATTTTTACGCGAATCGGCG 1939
....|||||....||||||||.||.||||||||.|||||.||.||.||.|
BPUM_1608___m 1884 ATCTAAAGCAACTCTTCCGATCTTTGATCAAATCTTTACACGTATTGGTG 1933
BSNT_02754___ 1940 CTGCAGATGATTTGATTTCCGGACAAAGTACATTTATGGTAGAAATGCTT 1989
|.|||||||||||||||||.||.||||||||.|||||||||||.||||||
BPUM_1608___m 1934 CGGCAGATGATTTGATTTCTGGTCAAAGTACTTTTATGGTAGAGATGCTT 1983
BSNT_02754___ 1990 GAAGCGAAAAATGCGATTGTCAACGCGACGAAAAACAGCCTCATTCTGTT 2039
|||||.|||||||||||.||..||||.||||||||||||.|.||..|.||
BPUM_1608___m 1984 GAAGCAAAAAATGCGATGGTGCACGCAACGAAAAACAGCTTGATCTTATT 2033
BSNT_02754___ 2040 TGATGAAATCGGGCGGGGAACGTCCACTTATGACGGCATGGCGCTGGCAC 2089
|||||||||.||.||.||.||...|||.|||||.||||||||.||.||.|
BPUM_1608___m 2034 TGATGAAATTGGACGCGGGACAAGCACCTATGATGGCATGGCTCTTGCGC 2083
BSNT_02754___ 2090 AGGCGATTATTGAATATGTTCACGATCACATCGGCGCCAAGACGCTGTTC 2139
|||||||.|||||||.|||.||||||||..|.||||||||.|||||.||.
BPUM_1608___m 2084 AGGCGATCATTGAATTTGTACACGATCATGTTGGCGCCAAAACGCTATTT 2133
BSNT_02754___ 2140 AGCACACACTATCACGAGCTGACCGTTCTTGAG-GACAAGCTACCCCAGC 2188
...|||||.||.||.|||||.|||||||||||| ..||| .||..|.|||
BPUM_1608___m 2134 TCTACACATTACCATGAGCTCACCGTTCTTGAGTCTCAA-TTAAGCGAGC 2182
BSNT_02754___ 2189 TGAAAAACGTTCATGTTCGCGCTGAAGAATATAACGGAACGGTTGTCTTT 2238
|||||||.||||||||.||.||||||||..||.|.||.|||||.|| |||
BPUM_1608___m 2183 TGAAAAATGTTCATGTACGAGCTGAAGAGCATGAAGGCACGGTCGT-TTT 2231
BSNT_02754___ 2239 CTT-CATCAAATTAAAGAAGGTGCCGCTGATAAAAGCTATGGTATCCATG 2287
||| ||||||||.|||||.||.||.||||||||||||||||||||.||||
BPUM_1608___m 2232 CTTACATCAAATCAAAGAGGGGGCAGCTGATAAAAGCTATGGTATTCATG 2281
BSNT_02754___ 2288 TAGCTCAGCTTGCCGAACTGCCGG--GAGATC--TGATTGCGCGCGCTCA 2333
||||.||||||||.|||.||||.| |.|||| .|||.|.|| |.
BPUM_1608___m 2282 TAGCACAGCTTGCTGAATTGCCTGATGCGATCATCGATAGGGC-----CC 2326
BSNT_02754___ 2334 AGA-TATTTTAAAAGAGCTTGAG-------CATTCAGGAA---ACAAACC 2372
||| .|||||.|..||||||||| || ||.||| || .||
BPUM_1608___m 2327 AGACCATTTTGACGGAGCTTGAGAGTGGATCA--CATGAAGTGAC--CCC 2372
BSNT_02754___ 2373 GGAAGT----GCCGGTGCAGAAACCTCAGGTGAAAGAAGAGCCGG----- 2413
|.|.|| ||.|.|.||.|||| ||||.||.|.|
BPUM_1608___m 2373 GCACGTATCAGCAGCTCCAAAAAC----------AGAAAAGGCCGAGGAA 2412
BSNT_02754___ 2414 ---CA-CAGCTGTCCTTTTTTGACGAAGCGGAAAAGCCGGCTGAAACACC 2459
|| ||.||.||.||.|||||.|.||..|||||.||| .|.|||
BPUM_1608___m 2413 AAACAGCAACTTTCTTTCTTTGAAGTAGAAGAAAAACCG-----CAAACC 2457
BSNT_02754___ 2460 AAAGC-TTTCAAAAAAAGAAA-AGCAA---GTGATCGATGCTTTCAAATC 2504
|||.| .|||.||||.||||| |.||| ||||||||.|..||.||.||
BPUM_1608___m 2458 AAACCAGTTCTAAAACAGAAAGATCAAGCGGTGATCGAGGAGTTAAAGTC 2507
BSNT_02754___ 2505 ACTTAATATACTGGATATGACACCGCTTGAAGCGATGAATGAAATGTACA 2554
|.|.|||.||.||||||||||.|||||.||||||||||.|.|..|.||..
BPUM_1608___m 2508 ATTCAATTTAATGGATATGACCCCGCTCGAAGCGATGACTAAGCTATATG 2557
BSNT_02754___ 2555 AGCTGCAAAAGAAATTACATTAA 2577
|..|||||||||||||| |||
BPUM_1608___m 2558 AATTGCAAAAGAAATTA---TAA 2577
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