Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02751 and BPUM_1606
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:24
# Commandline: needle
# -asequence dna-align/BSNT_02751___ymcA.1.24716.seq
# -bsequence dna-align/BPUM_1606___ymcA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02751___ymcA-BPUM_1606___ymcA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02751___ymcA-BPUM_1606___ymcA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02751___ymcA
# 2: BPUM_1606___ymcA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 441
# Identity: 337/441 (76.4%)
# Similarity: 337/441 (76.4%)
# Gaps: 15/441 ( 3.4%)
# Score: 1238.0
#
#
#=======================================
BSNT_02751___ 1 ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCACGAAACCTTGC 50
||||||||.||.|||||||||||.|||||..|||..|||.||.|.||.||
BPUM_1606___y 1 ATGACGCTTTATTCAAAAAAAGAGATTGTCGAGCGCGCAAGAGAGCTCGC 50
BSNT_02751___ 51 AAAAATGATTTCTGAAACAGAAGAGGTTGATTTTTTCAAACGGGCTGAAG 100
.|||||||||||||||||||||||.||||||||.||||||...||.||||
BPUM_1606___y 51 TAAAATGATTTCTGAAACAGAAGAAGTTGATTTCTTCAAAAAAGCAGAAG 100
BSNT_02751___ 101 CGCAAATCAATGAGAATGAC-AAAGTGTCCACAATCGTTAATCAGATTAA 149
|||||||||||||.||| || |||.|.||.||.||..||||.||.|||||
BPUM_1606___y 101 CGCAAATCAATGAAAAT-ACAAAAATTTCAACGATTATTAACCAAATTAA 149
BSNT_02751___ 150 AGCCCTGCAAAAGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAG 199
.||.||.|||||.||.||.||.|||.|.||||||||.|..||.|||||||
BPUM_1606___y 150 GGCGCTTCAAAAACAAGCGGTAAATTTAAAGCATTACGGCAAACATGAAG 199
BSNT_02751___ 200 CGCTCAAA-CAAGTAGAAGCAAAAATTGACGCGCTGCAAGAAGAGCTTGA 248
| ||.||| |||||.||||.||||||.||.||.|||||||||||.||.||
BPUM_1606___y 200 C-CTTAAAGCAAGTGGAAGAAAAAATCGATGCCCTGCAAGAAGAACTGGA 248
BSNT_02751___ 249 AGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAGATGGAAGTAAATG 298
.||.||.||.||.||.||.|||||||.|||.||.||..|||||||.|||.
BPUM_1606___y 249 TGAAATCCCAGTGATTCAAGAATTCAAAGAATCACAAGTGGAAGTCAATT 298
BSNT_02751___ 299 ACCTACTGCAGCTCGTTGCACACACCATTTCCAACCAAGTCACAAATGAA 348
.||||.||||||||||.||.||.||.|||||.||.|||||.|||.|||||
BPUM_1606___y 299 CCCTATTGCAGCTCGTGGCGCATACGATTTCTAATCAAGTAACAGATGAA 348
BSNT_02751___ 349 ATCATCACATCAACCGGAGGCGACCTGCTGA-AAGGGGAAACCGGTTCAA 397
|||||....||||||||.||.||||| ||.| .|||.|||||||||||||
BPUM_1606___y 349 ATCATTCTTTCAACCGGCGGTGACCT-CTTATTAGGAGAAACCGGTTCAA 397
BSNT_02751___ 398 AGGTGAAGCATTCAAATAAC--AGCTGTTCTCTCTAA---- 432
|.|||||..|||| ||.|| ||.||.|| |..|||
BPUM_1606___y 398 AAGTGAAAAATTC--ATCACCAAGTTGCTC-CATTAAATGA 435
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