Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02749 and BPUM_1605
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:24
# Commandline: needle
# -asequence dna-align/BSNT_02749___ymcB.1.24716.seq
# -bsequence dna-align/BPUM_1605___ymcB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02749___ymcB-BPUM_1605___ymcB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02749___ymcB-BPUM_1605___ymcB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02749___ymcB
# 2: BPUM_1605___ymcB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1556
# Identity: 1231/1556 (79.1%)
# Similarity: 1231/1556 (79.1%)
# Gaps: 55/1556 ( 3.5%)
# Score: 4867.0
#
#
#=======================================
BSNT_02749___ 1 ATGAATGAAAAACAAAAATTAGAGAGCGGACAAGTTAATCCATCGGACAA 50
|||||||||.|.||.|.|..||.||||||||||||.|.|.||||||||||
BPUM_1605___y 1 ATGAATGAAGAGCAGAGAAAAGCGAGCGGACAAGTAAGTTCATCGGACAA 50
BSNT_02749___ 51 AAAATCCGAGAAGGATTACAGCAAGTACTTTGAAGCTGTTTACATTCCGC 100
|||||||||||||||.||||||.||||.|||||||||||.||||||||||
BPUM_1605___y 51 AAAATCCGAGAAGGACTACAGCCAGTATTTTGAAGCTGTGTACATTCCGC 100
BSNT_02749___ 101 CTTCTTTAAAAGACGCGAAAAAACGAGGCAAGGAAGCCGT----TACTTA 146
||||.||||||||.||.||||||||.||.||.||||..|| |||
BPUM_1605___y 101 CTTCCTTAAAAGATGCAAAAAAACGGGGTAAAGAAGAAGTCGAATAC--- 147
BSNT_02749___ 147 TCATAATGACTTTAAAATTTCTGAACAATTTAAAGGATTGGGAGACGGAA 196
|||.|.|||.|||||...||.|..|||.||||.||.|||.||||..
BPUM_1605___y 148 ----AATCAATTTCAAATTGACGAGCGTTTTCAAGGGTTAGGAAACGGGC 193
BSNT_02749___ 197 GAAAGTTCTATATCCGTACGTACGGCTGCCAAATGAATGAACACGATACA 246
|.|||||.|||||.||.||.||.|||||.|||||||||||.||.||.|||
BPUM_1605___y 194 GCAAGTTTTATATTCGCACATATGGCTGTCAAATGAATGAGCATGACACA 243
BSNT_02749___ 247 GAGGTTATGGCAGGGATCTTTATGGCGCTCGGTTACGAAGCGACAAACTC 296
||.||.|||||.||.||.|||||||||||.|||||.|||.||||||||||
BPUM_1605___y 244 GAAGTGATGGCTGGTATTTTTATGGCGCTTGGTTATGAACCGACAAACTC 293
BSNT_02749___ 297 TGTTGACGATGCCAATGTCATTTTGTTAAATACATGTGCAATCCGTGAAA 346
....||.|||||.|||||.||..|.|||||.||.||||||||.|||||.|
BPUM_1605___y 294 AACGGAAGATGCAAATGTTATCCTATTAAACACTTGTGCAATTCGTGAGA 343
BSNT_02749___ 347 ATGCTGAAAACAAGGTGTTTGGTGAGCTCGGGCACTTAAAAGCACTGAAA 396
||||.||||||||.|||||.||.|||||.||.||.|||||||||.|
BPUM_1605___y 344 ATGCGGAAAACAAAGTGTTCGGAGAGCTTGGTCATTTAAAAGCATT---- 389
BSNT_02749___ 397 AAAA-----ACAATCCCGATCTAATTTTAGGCGTGTGCGGCTGTATGTCC 441
||| |.||.||.|||.||||||||||.||.|||||.||||||||.
BPUM_1605___y 390 -AAAGCGTGAAAAGCCAGATTTAATTTTAGGTGTCTGCGGATGTATGTCG 438
BSNT_02749___ 442 CAAGAGGAATCAGTCGTGAACCGTATTTTGAAAAAACATCCGTTTGTCGA 491
|||||||||||.|||||.||||||||||||||.||||||||.|||||.||
BPUM_1605___y 439 CAAGAGGAATCTGTCGTCAACCGTATTTTGAAGAAACATCCATTTGTTGA 488
BSNT_02749___ 492 TATGATTTTCGGAACGCATAACATTCATCGCCTGCCGGAGCTTTTGTCAG 541
|.||||||||||.||.||.||||||||.|||.|.||.|||.|.||.||.|
BPUM_1605___y 489 TTTGATTTTCGGTACACACAACATTCACCGCTTACCAGAGTTGTTATCTG 538
BSNT_02749___ 542 AA-GCATACCTTTCAAAAGAAATGGTTGTAGAAGTTTGGTCTAAGGAAGG 590
|| || ||.|||||||||||||||||..|.||.||||||||.||.|||||
BPUM_1605___y 539 AATGC-TATCTTTCAAAAGAAATGGTCATTGAGGTTTGGTCAAAAGAAGG 587
BSNT_02749___ 591 GGACGTTATTGAAAACCTTCCGAAAGTCCGAAATGGAAAAATTAAGGGCT 640
.||.||.||||||||||||||||.||.|||..|.||||||||||||||||
BPUM_1605___y 588 CGATGTCATTGAAAACCTTCCGAGAGCCCGCCAAGGAAAAATTAAGGGCT 637
BSNT_02749___ 641 GGGTCAATATCATGTACGGCTGTGACAAATTCTGTACGTATTGCATTGTG 690
||||.|||||.||||||||||||||.|||||||||||.||.||.||.||.
BPUM_1605___y 638 GGGTGAATATTATGTACGGCTGTGATAAATTCTGTACATACTGTATCGTC 687
BSNT_02749___ 691 CCTTACACACGCGGAAAAGAAAGAAGCCGCCGCCCTGAGGATATCATTCA 740
||||||||.|||||.|||||||||||||||||||||||.||.||.|||||
BPUM_1605___y 688 CCTTACACGCGCGGTAAAGAAAGAAGCCGCCGCCCTGACGAAATTATTCA 737
BSNT_02749___ 741 GGAAGTGAGAAGGCTT-----GCAAGTGAAGGCTATAAGGAAATTACACT 785
.||.||.|||.| || ||| |||||.|||||||||||.||.||
BPUM_1605___y 738 AGAGGTCAGACG--TTTAGCGGCA---GAAGGATATAAGGAAATAACCCT 782
BSNT_02749___ 786 GTTAGGCCAAAATGTAAACGCGTATGGAAAAGACTTTGAAGATATGACTT 835
..|.||.|||||.||.||.||||||||||||||.||||||||.|||...|
BPUM_1605___y 783 TCTTGGTCAAAACGTGAATGCGTATGGAAAAGATTTTGAAGACATGGAAT 832
BSNT_02749___ 836 ACGGACTTGGTGATTTGATGGATGAACTGAGAAAAATCGATATCCCGAGA 885
|.||.|||||..|.|||||||||||.|||.|.|||||||||||.|||.|.
BPUM_1605___y 833 ATGGTCTTGGACACTTGATGGATGAGCTGCGTAAAATCGATATTCCGCGT 882
BSNT_02749___ 886 ATCCGTTTTACAACGAGTCATCCGCGCGACTTTGACGACCGCCTCATTGA 935
||||||||||||||.||.||.|||||.||||||||.||.|.|.|.|||||
BPUM_1605___y 883 ATCCGTTTTACAACAAGCCACCCGCGTGACTTTGATGATCACTTAATTGA 932
BSNT_02749___ 936 AGTGCTTGCAAAAGGCGGAAATCTGCTTGATCACATTCATCTTCCGGTTC 985
||||.|.||.||.||.||.||.||.||.|||||.||||||.|.||.||||
BPUM_1605___y 933 AGTGTTAGCTAAGGGTGGGAACCTTCTCGATCATATTCATTTGCCAGTTC 982
BSNT_02749___ 986 AATCAGGAAGCTCAGAAGTTC-----TGAAGCTGATGGCCCGCAAATATG 1030
||||.||.||.|| ||| ||||.||.|||||..|.|||||||
BPUM_1605___y 983 AATCCGGTAGTTC-----TTCTGTCTTGAAACTTATGGCGAGAAAATATG 1027
BSNT_02749___ 1031 ACAGAGAGCGTTACATGGAGCTGGTGCGAAAAAT-AAAGACAGCGATGCC 1079
||.|.|||||||||.|.||.||.|||||.||||| ||||| |||.|||||
BPUM_1605___y 1028 ACCGTGAGCGTTACCTTGATCTTGTGCGCAAAATCAAAGA-AGCCATGCC 1076
BSNT_02749___ 1080 AAACGCTTCTTTGACAACGGACATTATCGTCGGATTTCCAAATGAAACGG 1129
|||.|||||.||.||||||||.|||||.||.||.||.||||||||.||.|
BPUM_1605___y 1077 AAATGCTTCATTAACAACGGATATTATTGTTGGGTTCCCAAATGAGACAG 1126
BSNT_02749___ 1130 ACGAACAGTTTGAAGAAACGCTTTCTCTATACCGTGAAGTGGAGTTTGA- 1178
|.||.||||||||.|||||.|||||.||.||.||.||.||.||||||||
BPUM_1605___y 1127 ATGAGCAGTTTGAGGAAACACTTTCCCTCTATCGCGAGGTTGAGTTTGAT 1176
BSNT_02749___ 1179 -CAGCGCCTATACGTTCATTTACTCTCCGCGTGAGGGCACTCCGGCTGCT 1227
|| ||.||||||||||||||||||||..|.||.||.||.||.||.||.
BPUM_1605___y 1177 GCA--GCTTATACGTTCATTTACTCTCCAAGAGAAGGAACACCAGCAGCG 1224
BSNT_02749___ 1228 AAGATGAAAGATAATGTACCGATGCGTGTGAAAAAAGAACGCCTGCAGCG 1277
||.|||.||||.||.||||||||||.|||||||||||||||.||.|||||
BPUM_1605___y 1225 AAAATGCAAGACAACGTACCGATGCATGTGAAAAAAGAACGTCTACAGCG 1274
BSNT_02749___ 1278 TCTAAACGCACTGGTGAATGAAATTTCTGCTAAAAAAATGAAGGAATACG 1327
.||.||.||.||.|||||||||||||||||.|||||||||||||||||.|
BPUM_1605___y 1275 CCTGAATGCCCTCGTGAATGAAATTTCTGCGAAAAAAATGAAGGAATATG 1324
BSNT_02749___ 1328 AAGGCAAGGTTGTCGAAGTATTAGTTGAGGGTGAAAGCAAAAATAACCCT 1377
||||..||..|||||||||||||||.|||||||||||.||||||||||||
BPUM_1605___y 1325 AAGGGCAGACTGTCGAAGTATTAGTAGAGGGTGAAAGTAAAAATAACCCT 1374
BSNT_02749___ 1378 GATATTCTTGCCGGCTATACGGAA--AAAAGCAAGCTTGTCAATTTCAAA 1425
||.||.||.|||||.||||| || ||||||||||||||.|||||.|||
BPUM_1605___y 1375 GAAATCCTAGCCGGATATAC--AAGTAAAAGCAAGCTTGTGAATTTTAAA 1422
BSNT_02749___ 1426 GGGCCGAAGGAAGCCATCGGCAAAATCGTCCGCGTGAAAATC-CAGCAAG 1474
|..||.||.|||||.||.|||||.||||||...||||||||| || ||||
BPUM_1605___y 1423 GCACCAAAAGAAGCGATTGGCAACATCGTCAAAGTGAAAATCACA-CAAG 1471
BSNT_02749___ 1475 CGAAAACATGGTCGCTTGACGGAGAAATGGTAGGAGAAGCAATCGAGGTG 1524
|.|||||.|||||.|||||||||||||||||.||||||||.|||||||||
BPUM_1605___y 1472 CCAAAACTTGGTCTCTTGACGGAGAAATGGTTGGAGAAGCTATCGAGGTG 1521
BSNT_02749___ 1525 AAATAA 1530
||.|||
BPUM_1605___y 1522 AATTAA 1527
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