Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02744 and BPUM_1600

See Amino acid alignment / Visit BSNT_02744 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:24
# Commandline: needle
#    -asequence dna-align/BSNT_02744___ymdB.1.24716.seq
#    -bsequence dna-align/BPUM_1600___ymdB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02744___ymdB-BPUM_1600___ymdB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02744___ymdB-BPUM_1600___ymdB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02744___ymdB
# 2: BPUM_1600___ymdB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 805
# Identity:     603/805 (74.9%)
# Similarity:   603/805 (74.9%)
# Gaps:          20/805 ( 2.5%)
# Score: 2201.0
# 
#
#=======================================

BSNT_02744___      1 ATGAGAATTTTATTTATCGGAGATGTTGTCGGTTCACCGGGCCGTGACAT     50
                     ||||.|||.||||||.|.||||||.|||||||||||||.||.||.||||.
BPUM_1600___y      1 ATGAAAATATTATTTGTTGGAGATATTGTCGGTTCACCTGGACGAGACAC     50

BSNT_02744___     51 GGTCAAAGAATATGTACCAAAGCTAAAAACAAAATATAAGCCTCACTTTA    100
                     ..|.||||||||..|.|||||.||.||.|..||||||.||||||||||||
BPUM_1600___y     51 ACTGAAAGAATACTTGCCAAAACTTAAGAAGAAATATCAGCCTCACTTTA    100

BSNT_02744___    101 CCATTATTAATGGTGAAAACGCCGCACATGGAAAAGGCCTGACGGAAAAA    150
                     |||||.|.|||||.|||||.||.||.|||||||||||..|.||.||||||
BPUM_1600___y    101 CCATTGTGAATGGAGAAAATGCTGCTCATGGAAAAGGAATAACTGAAAAA    150

BSNT_02744___    151 ATTTATCACAGATTAA-----TCCAGTCCGGCGCAGA--TGCAATCACAA    193
                     ||.|||||     |.|     |.||..|.||.||.||  |||  ||||||
BPUM_1600___y    151 ATCTATCA-----TGAGCTGCTGCAAGCAGGAGCTGACGTGC--TCACAA    193

BSNT_02744___    194 TGGGGAACCATACATGGGACAAAAAAGAAATATTTGATTTTATAGATGAC    243
                     ||||.||||||||||||||.||||.|||.||.|||||||||||.|||||.
BPUM_1600___y    194 TGGGCAACCATACATGGGATAAAAGAGACATTTTTGATTTTATCGATGAT    243

BSNT_02744___    244 GTTCCGAACTTGGTTCGCCCGGCAAACTTTCCTGAAGGAACACCGGGGAA    293
                     |...|..||.|||||||.|||||.|||||.||.|||||.|||||.||.||
BPUM_1600___y    244 GCAGCCCACATGGTTCGTCCGGCGAACTTCCCAGAAGGCACACCTGGTAA    293

BSNT_02744___    294 AGGGATCACATATGTGAAAGCAAAC--GGCAAAGAACTAGCAGTCATTAA    341
                     |||..|.||.|.|.|.|||  ||||  ||.||||||.||||.|||||.||
BPUM_1600___y    294 AGGTCTGACGTTTATCAAA--AAACAAGGGAAAGAATTAGCCGTCATCAA    341

BSNT_02744___    342 TTTGCAGGGACGTACGTTTTTGCCGCCGCTTGA-TGACCCGTTTTTAAAA    390
                     |.||||.||||||||.|||||.||.||.||||| || |||.|||..||||
BPUM_1600___y    342 TCTGCAAGGACGTACTTTTTTACCCCCACTTGACTG-CCCATTTCAAAAA    390

BSNT_02744___    391 GCGGATGAATTGATCGCAGAAGCTGCGAAAAGAACACCGTACATTTTTAT    440
                     |..||.||.||.||.||.|||||..|.|||.|.||.||||.|||||||||
BPUM_1600___y    391 GTAGACGAGTTAATTGCGGAAGCATCCAAACGTACTCCGTTCATTTTTAT    440

BSNT_02744___    441 CGACTTTCATGCCGAAGCGACAAGTGAAAAGCTCGCACTTGGCTGGTACA    490
                     .||.|||||||..|||||.||||||||||||||.||..|.||||||||.|
BPUM_1600___y    441 TGATTTTCATGGTGAAGCCACAAGTGAAAAGCTAGCGATGGGCTGGTATA    490

BSNT_02744___    491 CGGATGGGAGGGCGTCGGCTGTAGTAGGAACTCATACACACGTGCAAACG    540
                     |.||.||..|.||.||...|||.||.|||||.||||||||.||.|||||.
BPUM_1600___y    491 CAGACGGCCGTGCATCATGTGTGGTTGGAACGCATACACATGTTCAAACA    540

BSNT_02744___    541 GCGGATAACCGCATTTTGCCGAAGGGAACGGCATATATTACTGATGTGGG    590
                     ||.|||||||||.|||||||.||.|||||.||.||||||.|.||||||||
BPUM_1600___y    541 GCAGATAACCGCGTTTTGCCAAAAGGAACTGCGTATATTTCAGATGTGGG    590

BSNT_02744___    591 AATGACTGGCCCATATGACGGTATACTGGGGATGGACAGAGAGACGATTA    640
                     ||||||.||.||.|||||.||.||..|.||..|.||..|.|||||.||||
BPUM_1600___y    591 AATGACAGGACCTTATGATGGCATTTTAGGTGTTGATCGGGAGACAATTA    640

BSNT_02744___    641 TTAAGCGATTCAAAACGAACCTTCCAGTCCGGTTTACTGTCGCTGAAGGA    690
                     ||||.|||||||||||.|..|||||.|||||.|||....|.||.||||||
BPUM_1600___y    641 TTAAACGATTCAAAACAAGTCTTCCCGTCCGTTTTGAGATTGCAGAAGGA    690

BSNT_02744___    691 AAAACAACGCTCAGCGGAGTTGTGATTGACATTGACGATCAAACGAAAAA    740
                     ...||.||..|.||.|.|||..|..|.||.||||||||.||..|||||||
BPUM_1600___y    691 CCTACGACATTAAGTGCAGTCATCGTAGAAATTGACGAACAGTCGAAAAA    740

BSNT_02744___    741 AGCCGTGAAAATTGAGCGTATTTTAATCAACGATGATCACATGTTCTTTG    790
                     |||.||.||||||||.||.|||||.||.||.|||||.||.||.|||||||
BPUM_1600___y    741 AGCTGTCAAAATTGATCGAATTTTGATAAATGATGACCATATTTTCTTTG    790

BSNT_02744___    791 AATAG    795
                     ||||.
BPUM_1600___y    791 AATAA    795


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