Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02740 and BPUM_1598
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:23
# Commandline: needle
# -asequence dna-align/BSNT_02740___recA.1.24716.seq
# -bsequence dna-align/BPUM_1598___recA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02740___recA-BPUM_1598___recA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02740___recA-BPUM_1598___recA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02740___recA
# 2: BPUM_1598___recA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1048
# Identity: 853/1048 (81.4%)
# Similarity: 853/1048 (81.4%)
# Gaps: 8/1048 ( 0.8%)
# Score: 3497.0
#
#
#=======================================
BSNT_02740___ 1 ATGAGTGATCGTCAGGCAGCCTTAGATATGGCTCTTAAACAAATAGAAAA 50
||||||||||||||.|||||||||||||||||||||||||||||||||||
BPUM_1598___r 1 ATGAGTGATCGTCAAGCAGCCTTAGATATGGCTCTTAAACAAATAGAAAA 50
BSNT_02740___ 51 ACAGTTCGGCAAAGGTTCCATTATGAAACTGGGAGAAAAGACAGATACAA 100
||||||.||.|||||.||.|||||||||||.|||||..|.|||||||||.
BPUM_1598___r 51 ACAGTTTGGTAAAGGCTCTATTATGAAACTAGGAGAGCAAACAGATACAC 100
BSNT_02740___ 101 GAATTTCTACTGTCCCAAGCGGCTCCCTCGCTCTTGATACAGCACTGGGA 150
|.|||||.||.||.||.||.||.||..|.||.||||||||.|||||||||
BPUM_1598___r 101 GTATTTCAACAGTACCGAGTGGTTCGTTAGCACTTGATACTGCACTGGGA 150
BSNT_02740___ 151 ATTGGCGGATATCCTCGCGGACGGATTATTGAAGTATACGGTCCTGAAAG 200
||.|||||||||||||||||.||.||||||||||||||.|||||.||.||
BPUM_1598___r 151 ATAGGCGGATATCCTCGCGGGCGTATTATTGAAGTATATGGTCCAGAGAG 200
BSNT_02740___ 201 CTCAGGTAAAACAACTGTGGCGCTTCATGCGATTGCTGAAGTTCAGCAGC 250
.||.||||||||.||.||.||.||||||||.||||||||.||||||||||
BPUM_1598___r 201 TTCTGGTAAAACGACAGTAGCACTTCATGCCATTGCTGAGGTTCAGCAGC 250
BSNT_02740___ 251 AGGGCGGACAAGCCGCGTTTATCGATGCGGAGCATGCGTTAGATCCGGTA 300
||||.||||||||.||.|||||||||||.||||||||..|.|||||.||.
BPUM_1598___r 251 AGGGAGGACAAGCTGCATTTATCGATGCAGAGCATGCACTTGATCCAGTT 300
BSNT_02740___ 301 TACGCGCAAAAGCTCGGTGTTAACATCGAGGAGCTTTTACTGTCTCAGCC 350
||.||.|||||.||.|||||.||.||.||.|||.|.|||||.||||||||
BPUM_1598___r 301 TATGCTCAAAAACTAGGTGTCAATATTGATGAGTTGTTACTTTCTCAGCC 350
BSNT_02740___ 351 TGACACAGGCGAGCAGGCGCTTGAAATTGCGGAAGCATTGGTTCGAAGCG 400
|||||||||.|||||.||.|||||||||||.|||||..|.||.||.||.|
BPUM_1598___r 351 TGACACAGGAGAGCAAGCACTTGAAATTGCAGAAGCGCTTGTCCGCAGTG 400
BSNT_02740___ 401 GGGCAGTTGACATTGTCGTTGTCGACTCTGTAGCCGCTCTCGTTCCGAAA 450
|.||||||||.|||||.|||.|.|||||.|||||.|||||.||.||.|||
BPUM_1598___r 401 GTGCAGTTGATATTGTTGTTATTGACTCAGTAGCTGCTCTTGTACCAAAA 450
BSNT_02740___ 451 GCGGAAATTGAAGGCGACATGGGAGATTCTCATGTCGGTTTACAAGCACG 500
||.||.||||||||.||||||||.|||||.||.||.|||.||||||||||
BPUM_1598___r 451 GCAGAGATTGAAGGAGACATGGGTGATTCACACGTTGGTCTACAAGCACG 500
BSNT_02740___ 501 CTTAATGTCTCAAGCGCTTCGTAAGCTTTCAGGGGCCATTAACAAATCGA 550
.||.|||||.|||||.||||||||.||.||.||.||||||||.|||||.|
BPUM_1598___r 501 TTTGATGTCCCAAGCACTTCGTAAACTATCTGGTGCCATTAATAAATCAA 550
BSNT_02740___ 551 AGACAATCGCGATTTTCATTAACCAAATTCGTGAAAAAGTCGGCGTTATG 600
|.||.||.||.||.||.|||||||||||||||||||||||.||.||.|||
BPUM_1598___r 551 AAACCATTGCCATCTTTATTAACCAAATTCGTGAAAAAGTTGGGGTCATG 600
BSNT_02740___ 601 TTCGGGAACCCGGAAACAACTCCTGGCGGCCGTGCGTTGAAATTCTACTC 650
|||||.|||||.||||||||.|||||.||.||||||.||||.|||||.||
BPUM_1598___r 601 TTCGGTAACCCTGAAACAACGCCTGGTGGACGTGCGCTGAAGTTCTATTC 650
BSNT_02740___ 651 TTCCGTGCGTCTTGAAGTGCGCCGTGCTGAACAGCTGAAACAAGGCAACG 700
.||.||.|||.|.|||||||||||||||||||||||||||||.||.||.|
BPUM_1598___r 651 ATCTGTTCGTTTAGAAGTGCGCCGTGCTGAACAGCTGAAACAGGGAAATG 700
BSNT_02740___ 701 ACGTAATGGGGAACAAAACGAAAATCAAAGTCGTGAAAAACAAGGTGGCT 750
||.|.||||||||.|||||||.|||.|||||.|||||||||||.||.||.
BPUM_1598___r 701 ACATTATGGGGAATAAAACGAGAATTAAAGTGGTGAAAAACAAAGTAGCA 750
BSNT_02740___ 751 CCGCCGTTCCGTACAGCCGAGGTTGACATTATGTACGGAGAAGGCATTTC 800
|||||.|||||||..||.||.||.||.|||||||||||.|||||.||.||
BPUM_1598___r 751 CCGCCTTTCCGTATTGCAGAAGTAGATATTATGTACGGTGAAGGAATCTC 800
BSNT_02740___ 801 AAAAGAAGGCGAAATCATTGATCTAGGAACTGAACTTGATATCGTGCAAA 850
||||||.|||||.||||||||.||.||||..|||||.||||||||.||||
BPUM_1598___r 801 AAAAGAGGGCGAGATCATTGACCTTGGAAGCGAACTAGATATCGTACAAA 850
BSNT_02740___ 851 AAAGCGGTTCATGGTACTCTTATGAAGAAGAGCGTCTTGGCCAAGGCCGT 900
|.||||||.|.|||||.|||||..||||.||.||||||||.||||||||.
BPUM_1598___r 851 AGAGCGGTGCTTGGTATTCTTACCAAGAGGAACGTCTTGGACAAGGCCGC 900
BSNT_02740___ 901 GAAAATGCAAAACAATTCCTGAAAGAAAATAAAGATATCATGCTGATGAT 950
||||||||.|||||.|||||.||||||||.||||||||..|.||.|||||
BPUM_1598___r 901 GAAAATGCGAAACAGTTCCTTAAAGAAAACAAAGATATTCTTCTCATGAT 950
BSNT_02740___ 951 CCAGGAGCAAATTCGCGAACATTACGGCTTGGATAATAACGGAGT-AGTG 999
.||.||.||||||.|.||.||.|||||.|||||||..|||||||| |..|
BPUM_1598___r 951 TCAAGAACAAATTAGAGAGCACTACGGTTTGGATACAAACGGAGTGAAAG 1000
BSNT_02740___ 1000 CAGCAGCAAGCTGAAGAGACACAAGAAGAACTCGAATTTGAAGAATAA 1047
||.|.| |||.||||||....|||||.|||.|.||||||.||
BPUM_1598___r 1001 CACCTG-AAGATGAAGAAGGTCAAGAGGAATTGGAATTTTAA------ 1041
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