Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02739 and BPUM_1597
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:23
# Commandline: needle
# -asequence dna-align/BSNT_02739___cinA.1.24716.seq
# -bsequence dna-align/BPUM_1597___cinA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02739___cinA-BPUM_1597___cinA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02739___cinA-BPUM_1597___cinA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02739___cinA
# 2: BPUM_1597___cinA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1312
# Identity: 908/1312 (69.2%)
# Similarity: 908/1312 (69.2%)
# Gaps: 122/1312 ( 9.3%)
# Score: 2990.5
#
#
#=======================================
BSNT_02739___ 1 ATGGAATTTCCA---AAAAAAGCAGAAATAATTGCAGTCGGTTCAGAGCT 47
|.|||.| || |.||||||||||||.||||||||||||||.||.||
BPUM_1597___c 1 -TTGAAGT--CAGAGAGAAAAGCAGAAATTATTGCAGTCGGTTCCGAACT 47
BSNT_02739___ 48 GCTGCTTGGCCAAATCGCCAATACAAATGCTCAATTTATCAGCAAACAGC 97
..||||.||.|||||..|.|||||.|||||.|||||.|||||||||||||
BPUM_1597___c 48 TTTGCTAGGGCAAATTACGAATACGAATGCACAATTCATCAGCAAACAGC 97
BSNT_02739___ 98 TCGCTGAAATCGGGGTCAACGTATTTTATCATACAGCGGTCGGAGATAAC 147
|.||||||||.||.||.||.||.|.|||.||||||||.||.||.||.||.
BPUM_1597___c 98 TAGCTGAAATTGGTGTGAATGTTTATTACCATACAGCAGTTGGTGACAAT 147
BSNT_02739___ 148 CCGGAGCGGCTGAAGCAG-GTCATCCGCATTGCTGAAGAACGCTCTGACT 196
||.|||| |.|.||..|| |.|||.|...|.||..|.|||.|.||..|.|
BPUM_1597___c 148 CCAGAGC-GTTTAAAAAGAGCCATTCAAGTGGCGCAGGAAAGATCGAATT 196
BSNT_02739___ 197 TCATTATTTTTTCAGGAGGGCTTGGACCCACAAAAGATGATCTGACGAAA 246
|.|||||.||.|||||.||.||||||||.||||||||||||.|.||.|||
BPUM_1597___c 197 TTATTATCTTCTCAGGTGGTCTTGGACCAACAAAAGATGATTTAACAAAA 246
BSNT_02739___ 247 GAAACGATTGCAAATACGCTGGGACGTCCGCTTGTGTTAAATGATGAGGC 296
|||||.|||||.|..|||||.|||.....|||||||.|||||||.||.||
BPUM_1597___c 247 GAAACCATTGCGAGCACGCTCGGAAAAGAGCTTGTGCTAAATGAAGAAGC 296
BSNT_02739___ 297 ATTCCAATCCATTGAGGACTA-TTTCAAACGA----ACAAAACGCACGAT 341
|||..||||||||.|.||.|| ||||.||.|| ||.|.|| ||
BPUM_1597___c 297 ATTTGAATCCATTCAAGAATACTTTCGAAAGACTGGACGAGAC-----AT 341
BSNT_02739___ 342 GTCACCTAATAACCGAAAACAGGCGCTTGTGATCGAAGGCTCTGACGTGC 391
||||||.|||||||||||||||||.||.||..|.|||||.|||||.||||
BPUM_1597___c 342 GTCACCGAATAACCGAAAACAGGCACTCGTTCTAGAAGGATCTGATGTGC 391
BSNT_02739___ 392 TGGCGAATCACTTTGGAATGGCCCCGGGAATGCTCA---CAGAGCATGAA 438
|.|.|||.|..|||||.|||||.|||||.|||.||| .|||..|.||.
BPUM_1597___c 392 TCGTGAACCGGTTTGGGATGGCTCCGGGTATGTTCATTCAAGAAAACGAT 441
BSNT_02739___ 439 TCGCGCTATTATATGCTTCTTCCTGGACCGCCGAGCGAATTGCGTCCAAT 488
.|| |.|||||||||||||||.||.|||||.||.|||.|||.|||.||
BPUM_1597___c 442 ACG---TTTTATATGCTTCTTCCAGGCCCGCCAAGTGAACTGCATCCGAT 488
BSNT_02739___ 489 GTTTGAAAACGAGGCAAAGC--CTCTTCTGCTGAAAAAGATGGGTTCAAA 536
||||||.|||||||||||.| |||.|.| ||||.||| .||||||.|||
BPUM_1597___c 489 GTTTGAGAACGAGGCAAAACCGCTCATAT-CTGAGAAA-CTGGGTTTAAA 536
BSNT_02739___ 537 TGAAAAAATTGTGTCAACCGTTCTTCGCTTTTTCGGTATCGGTGAATCTC 586
.||||||||.|||||....|||||.||.||.||.||.||.||||||||.|
BPUM_1597___c 537 GGAAAAAATCGTGTCTGTTGTTCTCCGTTTCTTTGGAATTGGTGAATCAC 586
BSNT_02739___ 587 AGCTTGAAGCCGATTTGGAAGATATTATTGATGCGCAAACCAATCCGACA 636
||||||||.|.||..|.||||||.|.||||||||.|||||||||||.||.
BPUM_1597___c 587 AGCTTGAAACAGACCTAGAAGATTTAATTGATGCTCAAACCAATCCAACG 636
BSNT_02739___ 637 ATTGCGCCTTTGGCGGCTGATGGAGAGGTGACGCTGCGTCTGACAGCCAA 686
|||||.|||.|.||..||||.||.||.|||||.||..|.||.||.||.||
BPUM_1597___c 637 ATTGCACCTCTTGCATCTGACGGTGAAGTGACACTTAGGCTCACGGCTAA 686
BSNT_02739___ 687 ACACGCCGATGAAAAGGAAACAGAGCGTCTGTTAAAAGAAACAGAGGCCG 736
.||.|..||||||||.|||||.|||||||||||||||||.||.||.||..
BPUM_1597___c 687 GCATGAGGATGAAAAAGAAACGGAGCGTCTGTTAAAAGAGACGGAAGCGA 736
BSNT_02739___ 737 TTATCTTAGAGCGTGTCGGTGAATTTTTCTATGGTTACGATGATACTTCT 786
..||.||||.|||.||.||.||.|..|||||.||.||.|.|||.||.||.
BPUM_1597___c 737 AAATTTTAGCGCGAGTAGGAGAGTACTTCTACGGGTATGGTGAGACATCA 786
BSNT_02739___ 787 CTTGT-----AAAAGAGCTATCTA-----TAGCGTG--CAAGGAAAAA-- 822
||||| | |||| ||.| |.|||.| ||.||.||||
BPUM_1597___c 787 CTTGTCCGCGA----AGCT-TCCAAGGCCTTGCGCGATCACGGGAAAACA 831
BSNT_02739___ 823 --GGCATTACAATTTCTGCGGCAGAAAGCTTTACCGGAGGGCTGTTTTCT 870
|||| |||||.||.|||.|.||.||.||..||||||||
BPUM_1597___c 832 GTGGCA-----------GCGGCTGAGAGCCTAACAGGCGGAATGTTTTCT 870
BSNT_02739___ 871 GAATGGCTGACGGATCATAGCGGTGCCTCAAAATT--ATTT---GCCGGG 915
|||||||||||.||||.|...|||||.|| .| |||| | |||.
BPUM_1597___c 871 GAATGGCTGACAGATCTTGAAGGTGCGTC----GTCGATTTTAAG-CGGC 915
BSNT_02739___ 916 GGCGTTGTTTGCTATACAAACGACGTGAAGCAGAATGTGCTTGG-TGTCA 964
.|..|.|||||.|||||||||.|.||.||.|||.|.|||||||| || |.
BPUM_1597___c 916 AGTATCGTTTGTTATACAAACCAAGTCAAACAGCAGGTGCTTGGCTG-CC 964
BSNT_02739___ 965 AGAAGGAAACATTAGATCGTTT--TGGGGCGGTCAGCAAGGAGTGCGCAT 1012
.|.|||||||||| .||.|.| |||.||.||||||||.|||||.||.|
BPUM_1597___c 965 GGGAGGAAACATT--GTCCTCTCATGGTGCTGTCAGCAAAGAGTGTGCTT 1012
BSNT_02739___ 1013 CCGAACTGGCTAAGGGTGTTCAAAAACTCACTGGCAGCGATATCGGCATC 1062
..||.||.|||.|.||||||..|||.|||||.||.||.|||||.|||||.
BPUM_1597___c 1013 TAGAGCTTGCTGAAGGTGTTAGAAAGCTCACGGGAAGTGATATTGGCATT 1062
BSNT_02739___ 1063 AGCTTTACTGGTGTAGCAGGACCTGATGCTCAAGAAGGGCATGAGCCTGG 1112
||||||||.|||||||||||.||||||.|.||.||.||.| |||| ||
BPUM_1597___c 1063 AGCTTTACGGGTGTAGCAGGCCCTGATACCCACGAGGGAC---AGCC-GG 1108
BSNT_02739___ 1113 GC----ATGTGTTTATCGG--CATTTCCGCAAATGGTAAAGA----AGAG 1152
.| |.|||||.||||| .||.|.|| ||||| |.||
BPUM_1597___c 1109 TCGGAAAAGTGTTCATCGGGCTATCTACG--------AAAGACCATACAG 1150
BSNT_02739___ 1153 GTTCACGAGTTTCA------CTTTGCGGGCTCCAGAACGGGGATCAGAAA 1196
|||.||||.| .|||.|.||...|.|..||||.||..|.||
BPUM_1597___c 1151 ----ACGTGTTTGAATGGATGTTTACTGGAAGCCGGTCGGGCATTCGCAA 1196
BSNT_02739___ 1197 ACGCGGCGCTAAATACGGCTGCCAT-------TTAATCTTAAAGCTTTTA 1239
|||||..|..||||||||.|..||| |.||| ||| |||
BPUM_1597___c 1197 ACGCGCTGTGAAATACGGTTTGCATCACTTGCTCAAT-TTA------TTA 1239
BSNT_02739___ 1240 GAGCAAAAATAA 1251
.|..|||..|||
BPUM_1597___c 1240 AAAGAAAGTTAA 1251
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