Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02738 and BPUM_1596

See Amino acid alignment / Visit BSNT_02738 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:23
# Commandline: needle
#    -asequence dna-align/BSNT_02738___pgsA.1.24716.seq
#    -bsequence dna-align/BPUM_1596___pgsA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02738___pgsA-BPUM_1596___pgsA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02738___pgsA-BPUM_1596___pgsA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02738___pgsA
# 2: BPUM_1596___pgsA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 594
# Identity:     447/594 (75.3%)
# Similarity:   447/594 (75.3%)
# Gaps:          24/594 ( 4.0%)
# Score: 1626.5
# 
#
#=======================================

BSNT_02738___      1 ATGTTTAACTTACCAAATAAAATCACACTAGCTAGAATCGCATTAATCCC     50
                     ||||||||||||||.||||||||.||.||..||||.|||||.||.|||||
BPUM_1596___p      1 ATGTTTAACTTACCGAATAAAATAACTCTTTCTAGGATCGCCTTGATCCC     50

BSNT_02738___     51 AATCTTCATGATTATCATGCTGGCGCCGTTTGACTGGGGCAG--GCTCGA     98
                     ..|.||.||||||||.|||||.||.||.||.||.||||| ||  ||||| 
BPUM_1596___p     51 TGTTTTTATGATTATTATGCTTGCACCCTTAGATTGGGG-AGTTGCTCG-     98

BSNT_02738___     99 AGTTGGAGAC----GAATCGATCCCGGTCGCACAT----TTGGCGGGGGC    140
                     ..||||..||    |.|||||    .||..|.|||    |||||    ||
BPUM_1596___p     99 TTTTGGTCACGTCAGCATCGA----AGTGACGCATCTTGTTGGC----GC    140

BSNT_02738___    141 CATTCTATTTATTATTGCATCTACAACAGACTGGGTGGACGGGTATTATG    190
                     .||.||.||||||.||||.||.|||||.||||||.|.||.|||||.||||
BPUM_1596___p    141 AATCCTGTTTATTGTTGCTTCGACAACGGACTGGATTGATGGGTACTATG    190

BSNT_02738___    191 CCCGAAAATTGAATCTCGTAACAAACTTCGGGAAATTTCTTGATCCGCTT    240
                     |.||.|||.||||..|.||.||.||.||.||.||||||.|.|||||||||
BPUM_1596___p    191 CGCGTAAACTGAACTTAGTGACGAATTTTGGTAAATTTTTAGATCCGCTT    240

BSNT_02738___    241 GCGGACAAACTGCTGGTATCCGCAGCGTTAATTATCCTTGTTCAATTTGA    290
                     ||.||.|||.||||.||.||.||.||.||||||||.||||||||.|...|
BPUM_1596___p    241 GCAGATAAATTGCTTGTTTCAGCTGCTTTAATTATACTTGTTCAGTACAA    290

BSNT_02738___    291 TCTCACTCCAGCTTGGATGGTCATTGTGATTATCAGCAGGGAGTTTGCCG    340
                     .|||||.||.||.|||||||..||||||||.||.|||.|.||.|||||.|
BPUM_1596___p    291 CCTCACGCCGGCATGGATGGCGATTGTGATCATTAGCCGTGAATTTGCTG    340

BSNT_02738___    341 TGACAGGTTTAAGGCTTGTCTTAGCCGGAACAGGAGAAGTCGTAGCTGCT    390
                     |.||.|||.||||||||||..||||||||...||.|||||.|||||.|||
BPUM_1596___p    341 TAACTGGTCTAAGGCTTGTACTAGCCGGAGGCGGTGAAGTGGTAGCAGCT    390

BSNT_02738___    391 AACATGCTTGGTAAAATCAAAACCTGGGCACAGATTATTGCGGTATCCGC    440
                     ||.||||||||.|||.|.|||||.|||||.||.||.||||||.|.||.||
BPUM_1596___p    391 AATATGCTTGGAAAAGTGAAAACATGGGCGCAAATCATTGCGATTTCAGC    440

BSNT_02738___    441 ATTGCTTCTT-CATAATCTTCCATTTGAACTTGTGTCATTCCCGTTTGCA    489
                     ..|.| |||| |||||.||.||.|||||||||||.|||||||||||||..
BPUM_1596___p    441 CCTTC-TCTTGCATAACCTGCCGTTTGAACTTGTATCATTCCCGTTTGGT    489

BSNT_02738___    490 GACTTGGCACTGTGGGTAGCCGTCTTCTTTACTGTCGTCTCAGGCTGGGA    539
                     |||.|.||..||||||||||.||.|||||.|||||.||.|||||||||||
BPUM_1596___p    490 GACCTTGCGATGTGGGTAGCAGTGTTCTTCACTGTTGTGTCAGGCTGGGA    539

BSNT_02738___    540 ATA-TTTCTCTAAAAACTGGGAAGCGTTAAAAACATCTAACTAA    582
                     .|| |||.| .||||||||||||||.|||||.|..|||||||||
BPUM_1596___p    540 TTACTTTGT-GAAAAACTGGGAAGCTTTAAAGAATTCTAACTAA    582


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