Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00975 and BPUM_1591
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:38
# Commandline: needle
# -asequence dna-align/BSNT_00975___ydgH.1.24716.seq
# -bsequence dna-align/BPUM_1591___ydgH.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00975___ydgH-BPUM_1591___ydgH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00975___ydgH-BPUM_1591___ydgH.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00975___ydgH
# 2: BPUM_1591___ydgH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 3489
# Identity: 1741/3489 (49.9%)
# Similarity: 1741/3489 (49.9%)
# Gaps: 1200/3489 (34.4%)
# Score: 3671.0
#
#
#=======================================
BSNT_00975___ 1 ATGAGAGCAATCATCAA------AT------TCAAGTGGGCAATTGCAGC 38
||||||||||||||.|| || ||| |.|||..|..
BPUM_1591___y 1 ATGAGAGCAATCATAAAGGGTAGATGGCTGATCA------CGATTTTATG 44
BSNT_00975___ 39 CATAGTATTAGC---------ACTTACCGTCGTTTTGAGTTTGTTTTCTC 79
.||.|||||||| |||||.|..|| |||
BPUM_1591___y 45 GATCGTATTAGCGGCAGTGTTACTTATCACCG---------------CTC 79
BSNT_00975___ 80 CGAACTTAACGGAGCTGGC-CAAT---CAAAAGGGGCAGGCCCAGCTTCC 125
|.|| || |||| |||| ||||||....|||.|.|..||
BPUM_1591___y 80 CTAA--TA-------TGGCGCAATTAACAAAAGAAAAAGGACAAATTT-- 118
BSNT_00975___ 126 CGCTGATGCTGTTTCAGA-------AAG--------GGCAAACGCCATTT 160
|.||..|||| ||| .||||| .||.||
BPUM_1591___y 119 --------CAGTACCAGACGGCTATAAGTCCTCATATGCAAA--TCAGTT 158
BSNT_00975___ 161 ------TAAAA------CAAGCGG-GAGA-AGACAA--TAATTCGATCAG 194
||||| .||.||| ||.| |||.|| .|||| .|||
BPUM_1591___y 159 ATTAAATAAAATGTCTGAAAACGGTGATACAGAAAAATCAATT--GTCA- 205
BSNT_00975___ 195 TGTTGTCTTTACATTAGACAACGCTAT----AAAGAA--AGAAACA---- 234
||||||||..|..|.|.||| || |||||| |||||||
BPUM_1591___y 206 --TTGTCTTTCAAGAAAAGAAC---ATCGTCAAAGAAAGAGAAACATCTT 250
BSNT_00975___ 235 GAGAATCAGCTCCGGATAATGATT---GATAAA--ATCAAAAAGATCGAC 279
.|.||..|||...||| |||| || ||| ||| ||||||.||
BPUM_1591___y 251 TAAAAAAAGCAATGGA----GATTTTAGA-AAAGGATC---AAGATCTAC 292
BSNT_00975___ 280 GGTGTAGAAGAGGTAACATCTCCTC------TGTCAGCGGAAAAAGAAGT 323
.||||||.| |||||.|.|| ||.| ||..|.|||||..|
BPUM_1591___y 293 -ATGTAGAGG-----ACATCACTTCGTATTTTGAC-GCCAATAAAGATAT 335
BSNT_00975___ 324 CAAAGACCAGTTGATGTCGAAAGA--CAAGAAAACCGTTCTCATGCCTGT 371
.|||.|.|||.||.|.||.||||| .||..|.|| ||||..|.||.||
BPUM_1591___y 336 TAAAAAACAGATGCTCTCTAAAGATCGAACGACAC--TTCTTGTTCCAGT 383
BSNT_00975___ 372 ---------------CACGATTACAGGTTCTG-------ATAAAAAGGC- 398
||..||.|.||.|||.| |.||||||.|
BPUM_1591___y 384 TACATATGACTCAAACAAAATCAAAGCTTCCGTTTTTAAAGAAAAAGTCA 433
BSNT_00975___ 399 -GGAAAAAATCGCGGACGAGATTTATCAAATCGTTCCTGATGATTTGACG 447
.|||||| |.||.|||.|| ||||| ||||.
BPUM_1591___y 434 ATGAAAAA----CTGAAGAGTTT----AAATC-------------TGACA 462
BSNT_00975___ 448 GCTTATATTACGGGAGCTTCCCTT-ATCAACCAGGATTTCGCTCAC-AGC 495
..|.|.||.||.||| |..||.|| ||..|..|.|||.| |.|||| |||
BPUM_1591___y 463 TATGAAATGACAGGA-CAGCCGTTAATTGATGATGATGT-GATCACAAGC 510
BSNT_00975___ 496 TCAGAGGAAGGGCTTAAGAAAACGGAAGTGATCACAGTCTGCCTGATCAT 545
|||.|.||.||.||.||||||||.||..|.||.|| ||| |
BPUM_1591___y 511 TCACAAGAGGGTCTAAAGAAAACAGAGTTCATTAC---------GAT--T 549
BSNT_00975___ 546 CGGTTTACTGTTGATCGTGT----TCC---------GATCTGTTGTGACG 582
.|||||| |..|.||||| | ||| ||||.|.||||.|.
BPUM_1591___y 550 GGGTTTA-TTCTCATCGT-TCTAGTCCTTGTCTTTAGATCAGCTGTGGCA 597
BSNT_00975___ 583 CCTTTTATCCCGATTGTGGTTGTCGGTTTTTCTTATCTGATCAGTCAATC 632
|||||..|.|||.|.||.|..||.|.|.|.|||||..||.|.||||||||
BPUM_1591___y 598 CCTTTCGTTCCGTTAGTCGCAGTAGCTCTATCTTACTTGGTGAGTCAATC 647
BSNT_00975___ 633 CATACTGGGCATCCTTGTATACAATGTT---------GATTTTCCTATCT 673
|||..||| |||.|.|| ||| ||.||.||..|||
BPUM_1591___y 648 CATCGTGG-----CTTATTTA----GTTAAATATCTCGACTTCCCGCTCT 688
BSNT_00975___ 674 CGACGTTTACGCAAACCTTCTTAGTTGCGATCCTGTTCGGCATTGGAACA 723
|.||.|||||.||||.||||.|.||.||||||.||||.||.||.|||||.
BPUM_1591___y 689 CAACCTTTACCCAAATCTTCATGGTCGCGATCATGTTTGGTATAGGAACG 738
BSNT_00975___ 724 GATTACTGCATACTGCTTCTTACACGGTTCCGTGAAGAATTGGCAAACGG 773
||.||||||||.||||||||.|..||.||....|||||..|.|||.||||
BPUM_1591___y 739 GACTACTGCATTCTGCTTCTCAGCCGCTTTAAAGAAGAGATCGCACACGG 788
BSNT_00975___ 774 GCATGATAAAAAAGAAGCGGCGCTTATCGCTTACCGT-----ACAGGGGG 818
..|.|||||||..|| ||||.||.|| .||| ||| ||||..||
BPUM_1591___y 789 TAAAGATAAAATTGA---GGCGATTCTC-ATTA-CGTATAAAACAGCAGG 833
BSNT_00975___ 819 AAAAACCTTATTTA-TCAGCGGATTTGCGGTATTGATCGGATTTTCCGCC 867
|||.| ||..|||| |||||||..|.||.||..|.|||||.|||.|
BPUM_1591___y 834 AAAGA-CTGTTTTATTCAGCGGGATCGCTGTGCTCATCGGTTTTAC---- 878
BSNT_00975___ 868 TTA-GGATTTGCGAAGTTTGCGATTTTCC---------AATCCGCAGTAG 907
| |.|||.|| ||.|||...|||| ||||.||.||.|
BPUM_1591___y 879 --ATGTATTGGC----TTGGCGCAATTCCAGCTCTATAAATCAGCTGTTG 922
BSNT_00975___ 908 GGGTAGCAGTCGGTGTGGGAATCTTAATGATCAT-------CCTCTACAC 950
..||||||||.|||||.| || .||.|||| |.||| |||
BPUM_1591___y 923 CAGTAGCAGTTGGTGTCG----CT--GTGCTCATTGTGGCGCTTCT-CAC 965
BSNT_00975___ 951 ACTGCTGCCATTATTTATGGTGACGCTGGGT-----GAAAAAT--TATTC 993
|.|..|.||.||.||||||| .||| |||||.| ||||.
BPUM_1591___y 966 AATTGTTCCTTTCTTTATGG-------CGGTTTTAGGAAAAGTGCTATTT 1008
BSNT_00975___ 994 TGGCCTTCTAA----GAAAGTGCTGTCA--CACAGTGATAACAAACTATG 1037
|||||...||| ||.|.||| ||| |.||||.| |||.|.||
BPUM_1591___y 1009 TGGCCGATTAAAGGTGATATTGC--TCATCCGCAGTCA----AAAATGTG 1052
BSNT_00975___ 1038 GGCGTTTCTCGGCAGACACTCCGTTGCGCGTCCGTTT------------- 1074
|| |.||| ||..|||..|||
BPUM_1591___y 1053 GG-----------AAACA-------GCAGGTCGCTTTTCATTTAAAAAAC 1084
BSNT_00975___ 1075 --CTGTTCATTGTCATAACGGTGG---TGATTACGCTTCCGTTCA-TCTT 1118
||.||.|.|.|..|||..||.| |.||||||||||||..|| ||||
BPUM_1591___y 1085 CACTTTTTAGTTTATTAATCGTAGGAATCATTACGCTTCCGCCCATTCTT 1134
BSNT_00975___ 1119 ----------GA-------CCTAT---------GATG------------- 1129
|| |.||| ||||
BPUM_1591___y 1135 ATGTATAAAGGAACGCTTTCTTATAACAGCTTAGATGAAATTGGTAATAA 1184
BSNT_00975___ 1130 ------ACCAG-------ATTTCATTCGACT-----CAACTGCGGA---- 1157
|.||| |||..||.|||.| |||.|..|||
BPUM_1591___y 1185 ATATGAATCAGTCAATGCATTCAATACGATTTCTGACAAATTTGGACCAG 1234
BSNT_00975___ 1158 ---------AATCAGCAACGATTAT----AAATCTATAAAAGC---TCT- 1190
.|.|.|||||||||.| ||||| ||| |||
BPUM_1591___y 1235 GAGAAGCTCTACCTGCAACGATTGTTGTGAAATC------AGCTGATCTG 1278
BSNT_00975___ 1191 -----CGAGGCCATTAAGGATGGATTCGGGGAAG--GAAAAGCGTTC--C 1231
|.| |.||.|||||..|||| |..| |||||.| || |
BPUM_1591___y 1279 TTAGACAA--CAATAAAGGACTGATT----GCTGTTGAAAAAC--TCAGC 1320
BSNT_00975___ 1232 CGATCAAT----------GTTGTCGTA---AAAG-GAGACAAAGATCTTA 1267
||..|||| |.||.|||| |||| ||| ||| |.
BPUM_1591___y 1321 CGTGCAATTGAACAAACAGATGGCGTAAGTAAAGTGAG---AAG----TG 1363
BSNT_00975___ 1268 CAACA-----------------GCTGATACAATCCCTTATCTA----GGA 1296
|.||| ||||| .|.||||| .||
BPUM_1591___y 1364 CGACACGTCCTGTCGGTAAAGGGCTGA--------GTGATCTATACGTGA 1405
BSNT_00975___ 1297 AAT-ATCAGCAAAGCGATCGAGAA-----------AGTTGA------TCA 1328
||| |..|||||| |||| |.|||| |.|
BPUM_1591___y 1406 AATCACAAGCAAA-------AGAACTGAATACCGGACTTGATAAAAGTAA 1448
BSNT_00975___ 1329 TG-----TTGA---------------CTCTG----TTATGA------CCA 1348
|| |||| |.||| ..|||| |||
BPUM_1591___y 1449 TGAAGGCTTGAAAAAAATACAAGATGCACTGACGACAATGAGTCAATCCA 1498
BSNT_00975___ 1349 TT---------ACGCAGCCGACTGGTGAAA--AAATC-------AAAG-- 1378
|| ||.|.|| ||| ||||| ||||
BPUM_1591___y 1499 TTGAGGATCAAACACCGC---------AAATCAAATCATCTGGAAAAGGC 1539
BSNT_00975___ 1379 ATTTATATATTGAT-----------AACCAGCT------AGG-------- 1403
|||.|.|.|||||| ||.||| | |||
BPUM_1591___y 1540 ATTAACAAATTGATTTCTGGGACAGAATCAG-TGAAAACAGGCATTCAAA 1588
BSNT_00975___ 1404 ----------ATCGGTTTCAG---ACGG----GCTGAAT----------- 1425
|||| ||.|| ||.| ||.||||
BPUM_1591___y 1589 ACATCGAAAAATCG--TTAAGAGAACTGCAAAGCGGAATCGATCAAAACA 1636
BSNT_00975___ 1426 ---------------------AAGACA-------------GTAAAAGGGA 1441
||||.| |.||||||.|
BPUM_1591___y 1637 AAAACGGTGTTGCACAGATTAAAGAAAAAATTAAAGGTGCGAAAAAGGAA 1686
BSNT_00975___ 1442 TT----GCCGATGTC-CA-AAGCGGATTAAC------GGATATAGAAAAC 1479
|| ||..|.||| || |||.|.||.||| .|.||||.||||
BPUM_1591___y 1687 TTAACAGCTCAAGTCGCACAAGTGAATCAACAAGTGTCGCTATATAAAA- 1735
BSNT_00975___ 1480 GGACT------GAATCAAATGGCAGGGCAAACCGGCTCGGCCTCAAATGG 1523
|.|.| ||||.||| |||| ||| |..|| |
BPUM_1591___y 1736 GCATTTCCAAAGAATTAAA-GGCA--GCA-------TTAGC--------G 1767
BSNT_00975___ 1524 AGGGTCTGG---CGGTTCA----CTGGGCGATGCGGCAGATGGCTTGGGC 1566
|.|| ||| || ||| || |.|||.||.||| |.
BPUM_1591___y 1768 AAGG--TGGATACG--TCATCTTCT----GCTGCAGCGGAT-------GT 1802
BSNT_00975___ 1567 AAA---ATCAATCAGCAGCTGCAGCTCGTGAGCA----AACAGATTT--- 1606
||| ||.||||| || || |||| |||| ||||
BPUM_1591___y 1803 AAAAGCATTAATCA-CA----CA-------AGCAAATCAACA-ATTTAGT 1839
BSNT_00975___ 1607 -CCC-----AAACCGGCAATACCGCA-------------CAGACCGTGCA 1637
|.| |||| .|||.||||| || |.||| |
BPUM_1591___y 1840 ACACTTGAAAAAC---AAATTCCGCAGGTGAAAGAAAATCA-ATCGT--A 1883
BSNT_00975___ 1638 GCAGCTTACGGCAATCAGCGGACAGCTTGGCC--------AGATTCAAAC 1679
.|| .||.||| |.||||| || |..|||.|
BPUM_1591___y 1884 TCA------AGCCATC-----AAAGCTT--CCTATAATGAACTTTCTA-- 1918
BSNT_00975___ 1680 CGGCCTTG-AACAA---GCGAACCA-----ACAGCTCTCAGGCCAGCAGG 1720
||.||||| ||.|| ||.||.|| |||||| |.||||
BPUM_1591___y 1919 CGACCTTGCAAGAAGGCGCAAAACAGGCAGACAGCT---ATGCCA----- 1960
BSNT_00975___ 1721 CACAAGCCGGAACGCTGACAGAA---AGCCTAAAAAAGC---------TG 1758
.|||||| |||.|..|..|||| |||.|.||..||| |.
BPUM_1591___y 1961 AACAAGC--GAAAGAAGCTAGAAAACAGCTTGAAGCAGCGGATGCCTTTA 2008
BSNT_00975___ 1759 TC-CGAAGGCGTGAGGAGC-GCAAATCAGGGCCTGACGA---AAGTCTCT 1803
|| |.||.||| .|.|||| ||||| |.|.|.|.|||| ||.||..|
BPUM_1591___y 2009 TCGCAAAAGCG-AAAGAGCAGCAAA--AAGTCTTAACGAGTCAAATCGAT 2055
BSNT_00975___ 1804 GACGGT-ATTAC------AGCTTCCAGTGATA-TG--TT----------- 1832
|| |.| |||.| ||.|.|.|.|||.| || ||
BPUM_1591___y 2056 GA-GCTCATTGCTGGCTTAGATGCAATTGAAACTGGATTGGATAAAACGT 2104
BSNT_00975___ 1833 --AGAGGACATGAGCAAA-AGT----------CCAA---CTGTAAGAGAT 1866
|.|||.||.|.||||| ||| |||| .||.||..|.|
BPUM_1591___y 2105 CGAAAGGCCAAGGGCAAATAGTTGATAATATGCCAAAGCTTGCAAATGGT 2154
BSNT_00975___ 1867 ACA-GGCATATTCATTCCTGGTC---AAGTAATGAAGGACAAAGA----- 1907
.|| |||| |.|||||..||||| ||..||||||.|| |||||
BPUM_1591___y 2155 GCAGGGCA-AGTCATTGATGGTCAAAAACAAATGAAAGA-AAAGATTGGC 2202
BSNT_00975___ 1908 --CTTT------------------------------------AAGA---- 1915
|||| ||||
BPUM_1591___y 2203 GGCTTTGGTGATAATCTGACTAAACTAACTGATGGGCTGAACAAGAGCGT 2252
BSNT_00975___ 1916 -----------AGTCAATT----------------GACCAG--TATTCCT 1936
||..|||| |..||| .|.|.||
BPUM_1591___y 2253 CGATGGCTTGGAGAAAATTTCAAGCGGATTAATGGGTGCAGGTGACTACT 2302
BSNT_00975___ 1937 T------------------TGCAGA------------CGGC--------- 1947
| |.|||| ||||
BPUM_1591___y 2303 TAGACGAACTGAAAAATGCTCCAGATCAAGACATGGCCGGCTGGTTTATC 2352
BSNT_00975___ 1948 ---AAAGGTGTTC-----AATTAAGTGTCGTTC----------TGGATTC 1979
||||.|||.| |||.||| |.||| |.|||||
BPUM_1591___y 2353 CCAAAAGATGTACTGAAAAATAAAG---CATTCAAGCAAGTATTTGATTC 2399
BSNT_00975___ 1980 AAATCCGTAC---TCAGA-----ACAAGCT-------ATTG--------- 2005
| ||| ||.|| .||||.| ||||
BPUM_1591___y 2400 A------TACATGTCGGATGACCGCAAGATGACAAAGATTGATGTCATTT 2443
BSNT_00975___ 2006 -CGACAATAAACCAAAT--TAAAAAAGC--GGTCG-----CAAACGAAGT 2045
.||.||.||.|||.|| |||..|||| .|||| ||||| ||||
BPUM_1591___y 2444 TAGAAAAAAATCCATATGGTAATGAAGCCTTGTCGACGATCAAAC-AAGT 2492
BSNT_00975___ 2046 TGA--------------CGGCACTCC----------TTTGGAGGATGCA- 2070
.|| .||||||.| |||..|.||||||
BPUM_1591___y 2493 AGAAGCATCTGTCGAGCGGGCACTTCCTGAAACAAATTTAAAAGATGCAT 2542
BSNT_00975___ 2071 CAGATCGTAT---ACGGCGGGGTCACGAGTATGAATGCGGACTTAAAAGA 2117
||..|.||.| | ||.||..|.|||||||||||.||.||||||.|
BPUM_1591___y 2543 CATTTGGTGTTTCA----GGTGTATCAAGTATGAATGCTGATTTAAAACA 2588
BSNT_00975___ 2118 GCTATCCA---CAACGGACTTCTCCAGAACA--ATGGTGATT---ATGAT 2159
||| |.|| ||| ||.||| ||.| |.|||..|| |||||
BPUM_1591___y 2589 GCT-TTCAGACCAA--GATTTC-----AATAAGACGGTTCTTTACATGAT 2630
BSNT_00975___ 2160 TATAGGCCTGTTT-----AT-CGTGTTAACCATTTTGTTCCGCTCAATGA 2203
.||.|| |.||| || |.|||.|.|| |||||||.||..|..
BPUM_1591___y 2631 GATCGG--TATTTTCCTCATCCTTGTGATCC----TGTTCCGTTCGCTTG 2674
BSNT_00975___ 2204 TCATGCCGATTTATATGATCGCGTCATTGCTGCTGACGTACTATACGTCG 2253
|.|||||..|.||..||.|.|..|||.|..|..||||.||||.||| .|
BPUM_1591___y 2675 TGATGCCACTGTACTTGGTAGGTTCACTTATTTTGACCTACTTTAC--AG 2722
BSNT_00975___ 2254 ATATC--CATAACAGAATTAATTTT------TGTAAACGGCTTAGGAAAC 2295
.|||| .||.||||||||.||.|| |.| |||.||..|.
BPUM_1591___y 2723 CTATCGGAATGACAGAATTTATCTTCACTCATTT------CTTCGGTTAT 2766
BSNT_00975___ 2296 GCCGGCGTCAGCTGGGCAGTGCCATTCTTCAGCTTTGTCATCTTGATCGC 2345
.|.|||.|.|.||||||.||.||||||||..||||||||||.||.||.||
BPUM_1591___y 2767 CCGGGCATTAACTGGGCGGTTCCATTCTTTGGCTTTGTCATATTAATGGC 2816
BSNT_00975___ 2346 GTTAGGGGTAGATTATTCGATCTTCTTGCTGGATCGATTTAAGG------ 2389
|.|.||.||.||.||||||||.|||||..||||..|.||.||.|
BPUM_1591___y 2817 GCTCGGAGTCGACTATTCGATTTTCTTAATGGAGAGGTTCAATGAATACA 2866
BSNT_00975___ 2390 ------AAGAGGTGCACCTTGGCATTGAGC-AAGGTGTCGTCAGGTCAAT 2432
||||..|.|| .||.||..|||.| || |||||
BPUM_1591___y 2867 AAACAAAAGACATTCA-GTTTGCGATGACCGAA------------TCAAT 2903
BSNT_00975___ 2433 GAGCAAAATGGGATCTGTCATTATTACAGCTGCCATTATATTGGCCGGTA 2482
||..||.|||||.|||||||||||..|.|||||..||||.|||||.||.|
BPUM_1591___y 2904 GAAGAATATGGGCTCTGTCATTATGTCTGCTGCTGTTATTTTGGCAGGAA 2953
BSNT_00975___ 2483 CGTTCGCGGCGATGATGCCTTCAGG-----TGTCAATACACTGATGCAGG 2527
|.||.||.||.|||.|.|||||||| ||| |.||..|.|||.
BPUM_1591___y 2954 CATTTGCAGCCATGCTTCCTTCAGGAGTGCTGT-----CTCTCTTACAGA 2998
BSNT_00975___ 2528 TGGCAA---GTGTTATCATCATCGGGCTCTTGCTTTACGGCCTTGTTATA 2574
|.|||| ..|||.||| || ||.||.|||||.||||..||.|||.|.
BPUM_1591___y 2999 TTGCAACACTCGTTCTCA-CA--GGACTTTTGCTATACGCACTCGTTGTG 3045
BSNT_00975___ 2575 CTTCCGCTCTTCATCCCGGCAAT-----CATTGCGACCTTTGGAGAAGGA 2619
||.||..|.|||.|.||.|..|| .|||| ||.|||..||..
BPUM_1591___y 3046 CTACCATTGTTCGTACCTGTGATGGTGAAATTG-----TTCGGATCAGCG 3090
BSNT_00975___ 2620 AACTGGTGGCCGTTCGGCAGGAAGAAAGGAAAAGAGTAA 2658
|||||||..||.|| .|||.|.|||||.||.
BPUM_1591___y 3091 AACTGGTTCCCATT---------TAAACGGAAAGAATAG 3120
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