Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02728 and BPUM_1586
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:22
# Commandline: needle
# -asequence dna-align/BSNT_02728___ymfC.1.24716.seq
# -bsequence dna-align/BPUM_1586___ymfC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02728___ymfC-BPUM_1586___ymfC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02728___ymfC-BPUM_1586___ymfC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02728___ymfC
# 2: BPUM_1586___ymfC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 750
# Identity: 528/750 (70.4%)
# Similarity: 528/750 (70.4%)
# Gaps: 48/750 ( 6.4%)
# Score: 1749.0
#
#
#=======================================
BSNT_02728___ 1 ATGTCTACAAAAGCTGATAATCGGCACTTGTATTTGAAAGTAATTGAACG 50
|||||.||.|||.|.||.|||||.||.||.|||||||||||.|||||.||
BPUM_1586___y 1 ATGTCGACCAAAACAGACAATCGCCATTTATATTTGAAAGTGATTGACCG 50
BSNT_02728___ 51 AATTAAAGAGGATATAAAAAATGGGATCTACACTGAGAAGGAAAAGCTGC 100
.||||||||.||||||.||...||..|.|||.|.||.||.|||||.||||
BPUM_1586___y 51 TATTAAAGAAGATATACAATCAGGCGTATACGCCGAAAAAGAAAAACTGC 100
BSNT_02728___ 101 CTTCTGAATTTGAGCTTTCCAAAAAGCTT---GGTGTCAGCAGAGCGACG 147
||||||||||||||||.|| ||||||| ||.||.||.||||||||.
BPUM_1586___y 101 CTTCTGAATTTGAGCTCTC---AAAGCTTTTAGGCGTGAGTAGAGCGACA 147
BSNT_02728___ 148 CTAAGAGAAGCCTTGCGGATACTGGAAGAAGAG---CATGTGATTATCAG 194
||..|.||||||.|.||.|||.|.||||||||| .||.|.||| ||
BPUM_1586___y 148 CTGCGTGAAGCCCTTCGTATATTAGAAGAAGAGAAATATTTAATT---AG 194
BSNT_02728___ 195 AAGGCATGGTGTAGGCACTTTTGTCCATTCTAAG-CCGTTATTTCTTT-- 241
||||||||||||.||.||.||||||.|..| ||| || ..|||||
BPUM_1586___y 195 AAGGCATGGTGTGGGGACATTTGTCAACAC-AAGACC----ACTCTTTTC 239
BSNT_02728___ 242 --CGGGCATTGAACAGCTGAACAGTGTAACCAAGATGATAGAACAGGCGA 289
|.|||||.|||||||||...|||||.||.||.||||||||.||||..|
BPUM_1586___y 240 AACAGGCATAGAACAGCTGGCAAGTGTGACAAAAATGATAGAGCAGGTCA 289
BSNT_02728___ 290 ATATGACCCCTGGCACGATTTTTCTATCATCACAAGTGCTTA-----TGC 334
|||||||.|||||.||.||.|||.||||.||.|||| | |.|
BPUM_1586___y 290 ATATGACGCCTGGTACCATCTTTTTATCCTCGCAAG-----AAGGGGTAC 334
BSNT_02728___ 335 CGTCTGAAGATGATACGAAGAGATTTCATTTGGCAGAAGGGCAAGAACTT 384
|..|.||..|||||..||...|.|||||.|..|..|||....|.||..||
BPUM_1586___y 335 CAACAGAGAATGATGTGATTCGTTTTCAGTGTGATGAATCTGATGAGATT 384
BSNT_02728___ 385 TTTTACCTTGAACGAGTCAGGACAGCTGACGGACAGCCGATTGTGTATTG 434
||||...|.||.||.||..|.||.||.||.||||||||..|.||.||.||
BPUM_1586___y 385 TTTTCAATGGAGCGCGTTCGAACGGCAGATGGACAGCCCGTGGTTTACTG 434
BSNT_02728___ 435 TATAGACAAAATTCCGATGAA-TATTTTGCCGAATTCTTTTTCTCATCAG 483
|.||||.|||||||||.|.|| .||.||.||| .|||||||.|.|||.|.
BPUM_1586___y 435 TTTAGATAAAATTCCGGTCAAGCATCTTCCCG-CTTCTTTTACACATGAA 483
BSNT_02728___ 484 CAAGAATCTATGTTTGACCTTCTT----GAGAAAAATTCAGGCTCCGTAA 529
.||||.||..|.|||||.||..|| |||||..|..||| ||..|
BPUM_1586___y 484 GAAGAGTCGCTTTTTGAGCTGTTTGGAAGAGAACCACACAG----CGGGA 529
BSNT_02728___ 530 TCAGCTATGCAGTAACTGATATAGAACCGATCGGCTATCACGATACCA-- 577
|.|..||||||||..||||.||.|||||.||||||||.|||||| ||
BPUM_1586___y 530 TTAAATATGCAGTTGCTGACATTGAACCAATCGGCTACCACGAT--CAGG 577
BSNT_02728___ 578 TTTCTCCAGTACTTGAATGCGATCCGGAAACAGCCCTTTTGCTGTTAAAA 627
||||.||..||||.|||||.||.||.||||||||..|.||..|..|||||
BPUM_1586___y 578 TTTCACCGATACTAGAATGTGACCCTGAAACAGCATTATTATTACTAAAA 627
BSNT_02728___ 628 CAAACCCATTACGATCAGCACGATAAACCGGTGCTT-TATTCTTTAAATT 676
||||..||.||.||||||.|.|||.|.||||| ||| ||.||..|.||||
BPUM_1586___y 628 CAAATGCACTATGATCAGGATGATCAGCCGGT-CTTATACTCGCTTAATT 676
BSNT_02728___ 677 ATTTTAGAGCGGATAAATTCAGATTTCATGTTTTGCGTAAACGATTCTAA 726
|||||.||||||||||||||||.||||||||..|.|||||||||||.|||
BPUM_1586___y 677 ATTTTCGAGCGGATAAATTCAGCTTTCATGTGATACGTAAACGATTTTAA 726
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