Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02722 and BPUM_1582
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:22
# Commandline: needle
# -asequence dna-align/BSNT_02722___ymfA.1.24716.seq
# -bsequence dna-align/BPUM_1582.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02722___ymfA-BPUM_1582.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02722___ymfA-BPUM_1582.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02722___ymfA
# 2: BPUM_1582
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1692
# Identity: 1265/1692 (74.8%)
# Similarity: 1265/1692 (74.8%)
# Gaps: 48/1692 ( 2.8%)
# Score: 4585.5
#
#
#=======================================
BSNT_02722___ 1 TTGAAAAAGAAAAATACAGAAAACGTTAGAATTATCGCCCTTGGCGGTGT 50
||||||||||||||||||||.|||||.||||||||.||.||.||.||.||
BPUM_1582 1 TTGAAAAAGAAAAATACAGAGAACGTAAGAATTATTGCACTGGGAGGCGT 50
BSNT_02722___ 51 CGGAGAGATTGGGAAGAACCTTTATGTCATTGAAATTGACTCAGACATAT 100
.|||||.||.|||||.|||.|.|||||||||||||||||.||.|||||||
BPUM_1582 51 TGGAGAAATCGGGAAAAACTTATATGTCATTGAAATTGATTCCGACATAT 100
BSNT_02722___ 101 TTGTCGTTGATGCCGGCCTTATGCATCCAGAAAACGAAATGCTCGGTATT 150
.|||.||.|||||.|||.|.|||||||||||||||||||||||.||.|||
BPUM_1582 101 ATGTGGTGGATGCAGGCTTGATGCATCCAGAAAACGAAATGCTAGGCATT 150
BSNT_02722___ 151 GATGTAGTGATTCCTGACATATCATATTTGATTGAACGGGCTGACCGCGT 200
||.||.||.||||||||.||.||.|||||.|..|||||.|||||.||.||
BPUM_1582 151 GACGTCGTTATTCCTGATATCTCTTATTTAACAGAACGTGCTGATCGGGT 200
BSNT_02722___ 201 CAAGGCAATCTTTTTAACGCACGGGCACGATGAAAATATCGGCGGCGTTT 250
.||.|||||.|||.|.||.|||||.||.||||||...|||||.|||||.|
BPUM_1582 201 GAAAGCAATTTTTCTTACCCACGGACATGATGAAGCAATCGGAGGCGTAT 250
BSNT_02722___ 251 TTTACTTATTAAACAAGCTGTCCGTTCCAGTGTACGGAACAAAACTGACG 300
|..|.|..||||.|||..||||.||.|||||.||||||||.||.|||||.
BPUM_1582 251 TCCATTGCTTAAGCAAATTGTCTGTACCAGTTTACGGAACGAAGCTGACC 300
BSNT_02722___ 301 CTTGCACTGTTA---AGAGAGAAATTAAAACAATACGGACAT-AACCGAA 346
||||| |||| .||||.||||||||||||||.|| |.| ||.|.||
BPUM_1582 301 CTTGC---GTTACTTCGAGAAAAATTAAAACAATATGG-CTTCAATCAAA 346
BSNT_02722___ 347 AAACTGATTTAAGAGAAATTCACTCAAAATCTGTCATTACATTTGAATCA 396
||.||||.||..|.||..||||..|||||||.||||||||.||||||.||
BPUM_1582 347 AAGCTGACTTGCGTGAGGTTCATGCAAAATCAGTCATTACGTTTGAAACA 396
BSNT_02722___ 397 ACAAAAGTATCGTTCTTTAGAACGATTCACAGCATTCCTGATTCTGTAGG 446
|||||.|||||.|||||||||||||.|||||||||.||||||||.||.||
BPUM_1582 397 ACAAAGGTATCATTCTTTAGAACGAATCACAGCATCCCTGATTCAGTTGG 446
BSNT_02722___ 447 TGTGAGCTTTAAAACATCACTTGGATCTATTGTATGCACGGGAGACTTCA 496
..|.|||||.|||||.||.|||||.||.||.||||||||.||.||.||.|
BPUM_1582 447 GATCAGCTTCAAAACCTCTCTTGGTTCAATCGTATGCACAGGTGATTTTA 496
BSNT_02722___ 497 AATTTGACCAAACACCTGCACTTAATCAGACGTGCGACATTGGCGAGATC 546
|||||||.|||||.||.||.|||||.||..|.||.|||||.||.|||||.
BPUM_1582 497 AATTTGATCAAACCCCAGCGCTTAACCAAGCCTGTGACATCGGAGAGATT 546
BSNT_02722___ 547 GCCAAGATCGGCAATAGCGGCGTGCTCGCTCTGCTTTCTGACAGTGCAAA 596
||.||.||.||.||.|..||||||.|.||.||.|||||.||||||||.||
BPUM_1582 547 GCGAAAATTGGAAACAATGGCGTGTTAGCACTTCTTTCAGACAGTGCCAA 596
BSNT_02722___ 597 TGCGGAACGGCCGGGTTACACCCCTTCGGAAGCGGCT-GTCAGCGGAGAA 645
|||.|||...||.|||||.||.|||||.||.|| ||| |||...|..|||
BPUM_1582 597 TGCTGAAAAACCAGGTTATACACCTTCTGAGGC-GCTCGTCCAAGACGAA 645
BSNT_02722___ 646 ATTTCGGATGCGCTGTATAATTCACAGAACCGGGTGATTATTGCTGTTTT 695
||.||..|||||.||||.|||.|..|.||.||.||.|||.|.|||||.|.
BPUM_1582 646 ATCTCAAATGCGATGTACAATGCTGAAAATCGTGTCATTGTGGCTGTATC 695
BSNT_02722___ 696 CGCATCCAATATTAACCGGATTCAGCAAGTCATTCATGCAGCGGCTCAAA 745
..||||.||.||||||||..|.|||||..|||||.|||||.|...|||||
BPUM_1582 696 TTCATCTAACATTAACCGAGTGCAGCAGATCATTAATGCAACAAATCAAA 745
BSNT_02722___ 746 ATGGCAGAAAGATTGCCGTAGCCGGAAAAAATCT----TCAATCTGTCCT 791
|||||.|.|||.||||||||||.|||||.|||.| .||| || ||
BPUM_1582 746 ATGGCCGTAAGCTTGCCGTAGCAGGAAAGAATATGATGACAA-CT---CT 791
BSNT_02722___ 792 GCAGCTGGCGAGAAA-----GTTAGGATACATTGAAGCAGATGATGAATT 836
.||||||||||..|| ||||.|..|| ||||||.||.|||||
BPUM_1582 792 TCAGCTGGCGATCAAACTTGGTTATGTCAC-----AGCAGACGAAGAATT 836
BSNT_02722___ 837 GTTTATTTCTGTACAGGATGTCAA-AAAATATCCGAAGCGCGAAGTGGCC 885
.|||.|..|.||.||.||.||.|| ||||| ..||||...|||.||||.|
BPUM_1582 837 ATTTGTACCAGTTCAAGAAGTGAAGAAAAT-GGCGAAAAACGATGTGGTC 885
BSNT_02722___ 886 ATTATTACAGCCGGAAGCCAAGGTGAACCATTAGCTGCTTTGACAAGAAT 935
||..|.|||||.||||||||.||.||.||..|.|||||.||.||.|.|||
BPUM_1582 886 ATCCTGACAGCTGGAAGCCACGGAGAGCCTCTTGCTGCGTTAACCAAAAT 935
BSNT_02722___ 936 GGC-AAACAAAGCTCACAAACAGCTGAACATTGAAGAAGGGGATACGGTG 984
||| ||||||| .||||||||||||..|.||||||.|||..||||||||.
BPUM_1582 936 GGCAAAACAAA-ATCACAAACAGCTTCATATTGAAAAAGATGATACGGTT 984
BSNT_02722___ 985 GTCATTGCGTCAACTCCGATTCCCGGGCAGGAACTCATTTACTCTAAAAC 1034
||.|||||.||.||.||..||||.||.||.|||||||..||.||.|||||
BPUM_1582 985 GTGATTGCATCTACACCTCTTCCTGGCCAAGAACTCACCTATTCAAAAAC 1034
BSNT_02722___ 1035 AGTAGATCTTCTTGCGAGAGCCGGTGCACAAGTCATCTTTGCCCAAAAGC 1084
|||.|||.|.|||.|.|||..|||.|||||||||||.|||||.|||||.|
BPUM_1582 1035 AGTGGATTTCCTTACAAGAAGCGGCGCACAAGTCATTTTTGCACAAAAAC 1084
BSNT_02722___ 1085 GTGTTCATGTATCAGGACACGGCTCACAAGAAGAGTTAAAGCTGATGATC 1134
||||.|||||.||.||||||||.|..|||||.|||||||||||.|||.|.
BPUM_1582 1085 GTGTGCATGTTTCTGGACACGGGTGCCAAGAGGAGTTAAAGCTTATGCTG 1134
BSNT_02722___ 1135 AACCTGCTTAAACCAAAATATTTGATTCCTGTAAACGGCGAATACAGAAT 1184
|||.|.||.||.||.||.|||||.|||||.||.||.||||||||..|.||
BPUM_1582 1135 AACTTACTAAAGCCGAAGTATTTAATTCCGGTGAATGGCGAATATCGTAT 1184
BSNT_02722___ 1185 GCAAAAAGCTCATTCAAAAATCGCTGAAGAAACCGGCATGAAGCGCAGTG 1234
|||||||||.|||||....||.||.||||||...||.|||||.|||||||
BPUM_1582 1185 GCAAAAAGCACATTCTCGTATTGCAGAAGAAGTGGGAATGAAACGCAGTG 1234
BSNT_02722___ 1235 ACATCTTCTTAATTGAAAAAGGCGACGTCGTTGAATTCCGCGGCCAAAAC 1284
||||.|||||.|||||.|||||.||.||.||.||.||..|.||.||.|||
BPUM_1582 1235 ACATTTTCTTGATTGATAAAGGAGATGTTGTCGAGTTTAGAGGACAGAAC 1284
BSNT_02722___ 1285 GTAAAAATTGGGGATAAAGTTCCTTACGGCAATATTTTAATTGATGGTTT 1334
||.||.|||||.||.|||||||...|.|||||||||||.||.||||||.|
BPUM_1582 1285 GTCAAGATTGGTGAAAAAGTTCACCAAGGCAATATTTTGATCGATGGTCT 1334
BSNT_02722___ 1335 AGGTGTCGGTGATATCGGCAATATCGTATT----GAGAGACCGCCGCTTG 1380
.||.||.|||||||||||.||.||.||.|| ||.||| |||.|.
BPUM_1582 1335 TGGCGTTGGTGATATCGGGAACATTGTGTTACGCGATAGA----CGCCTA 1380
BSNT_02722___ 1381 CTTTCACAGGACGGAATTTTAATCGTTGTCATTACACTTGATAAACAAAA 1430
||.||.||.|||||.||.|||||.||.||||||||.||.||.||||||||
BPUM_1582 1381 CTGTCTCAAGACGGTATCTTAATTGTCGTCATTACGCTCGACAAACAAAA 1430
BSNT_02722___ 1431 GAAACATCTTGTGTCAGGACCAGAAATTATCACTCGCGGCTTTGTTTATG 1480
||||||..|..|.||.|||||.|||||.|||||..|.||.|||||.||||
BPUM_1582 1431 GAAACAATTAATTTCTGGACCTGAAATCATCACAAGAGGATTTGTGTATG 1480
BSNT_02722___ 1481 TAAGAGAGTCTGAAGGTCTAATCGTACAGGCTACTGAGCTCGTC---CGG 1527
|.|||||.|||||||..||.||.||..|.||.||.||..|.||| .||
BPUM_1582 1481 TCAGAGAATCTGAAGAACTGATTGTGAAAGCGACAGAAATGGTCAAAGGG 1530
BSNT_02722___ 1528 TCCATCGTGACAGAAGC-GACTGAAACATCAAATGTCGAATGGTCAACGC 1576
||.||.|.|| ||| .||.||||..||||.|||.|||||||||||..
BPUM_1582 1531 ---ATTGTCAAAG-AGCAAACGGAAAACTCAATTGTTGAATGGTCAACAT 1576
BSNT_02722___ 1577 TGAAGCAGGCAATGCGGGATGCTTTGAACCAATTCCTTTATGAAAAAACG 1626
|||||||..|.|||||.||.|...|.||.||||||||.|||||||||||.
BPUM_1582 1577 TGAAGCAATCCATGCGCGACGTACTCAATCAATTCCTATATGAAAAAACA 1626
BSNT_02722___ 1627 AAACGTAAACCGATGATCATCCCAATTATTATGGAAGTATAA 1668
||||||||.||.||||||||.|||||||||||||||||||.|
BPUM_1582 1627 AAACGTAAGCCAATGATCATTCCAATTATTATGGAAGTATGA 1668
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