Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02712 and BPUM_1576

See Amino acid alignment / Visit BSNT_02712 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:21
# Commandline: needle
#    -asequence dna-align/BSNT_02712___ymxH.1.24716.seq
#    -bsequence dna-align/BPUM_1576___ymxH.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02712___ymxH-BPUM_1576___ymxH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02712___ymxH-BPUM_1576___ymxH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02712___ymxH
# 2: BPUM_1576___ymxH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 274
# Identity:     203/274 (74.1%)
# Similarity:   203/274 (74.1%)
# Gaps:          17/274 ( 6.2%)
# Score: 752.5
# 
#
#=======================================

BSNT_02712___      1 ATGCGGCTCAGTGAATTATCAGGAAAGGAAATTGTAGACATCAAAAGAGC     50
                     .||.||||.|||||..|.||||||||.||.||.||.||.|||||||||||
BPUM_1576___y      1 TTGAGGCTAAGTGAGCTGTCAGGAAAAGAGATCGTCGATATCAAAAGAGC     50

BSNT_02712___     51 TGAACGGCTCGGAGTGCTCGGCCAGACCGATTTGGAAATCAATGAACAGG    100
                     .||||||||.||.|||||.||.||.|||||..|.||||||||||||||||
BPUM_1576___y     51 GGAACGGCTTGGCGTGCTTGGACAAACCGACCTTGAAATCAATGAACAGG    100

BSNT_02712___    101 ATGGACAGATTACAGCACTCCTCATTCCCACAGTTAAGTGGTTTGGTTTG    150
                     |.||.||.||.|||||||||.|.||.||..|.||.||||||||||||||.
BPUM_1576___y    101 ACGGTCAAATCACAGCACTCATTATACCTTCGGTGAAGTGGTTTGGTTTT    150

BSNT_02712___    151 AGAAAGCAAGGTCATGACATTCGTGTCCCATGGCACCATATTCAAAAGAT    200
                     .||||||||||..|||||||.||.|||||.|||.|.||.||||||||.||
BPUM_1576___y    151 CGAAAGCAAGGAAATGACATCCGCGTCCCGTGGAATCACATTCAAAAAAT    200

BSNT_02712___    201 CGGTTCAGATATGATTATATTAGATGTACCTGAGGAAAT---GCCTCCTC    247
                     .||.|||||||||||.||..|.|||||.|||||.|.|.|   |||.|| |
BPUM_1576___y    201 AGGATCAGATATGATCATTCTCGATGTGCCTGAAGCACTTCAGCCGCC-C    249

BSNT_02712___    248 G----ACAAGAG---------TAA    258
                     |    |.|||||         |||
BPUM_1576___y    250 GGGGAAAAAGAGCATCCATCATAA    273


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