Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02710 and BPUM_1573
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:21
# Commandline: needle
# -asequence dna-align/BSNT_02710___ylxY.1.24716.seq
# -bsequence dna-align/BPUM_1573___ylxY.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02710___ylxY-BPUM_1573___ylxY.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02710___ylxY-BPUM_1573___ylxY.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02710___ylxY
# 2: BPUM_1573___ylxY
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1009
# Identity: 658/1009 (65.2%)
# Similarity: 658/1009 (65.2%)
# Gaps: 104/1009 (10.3%)
# Score: 1969.0
#
#
#=======================================
BSNT_02710___ 1 ATGTACAAAAAATTTGTACCGTTTGCCGTTTTTTTATTTCTTTTTTTTGT 50
|..||||||....||||.||....||.|||.|||||.|..|..|.||
BPUM_1573___y 1 ---TTGAAAAAAACGTTACCATTCATTGTGTTTGTATTTTTACTGCTCGT 47
BSNT_02710___ 51 CTCATTTGAGATGATGGAAAATCCGCATGCACTTGATTATATAGGGGCAA 100
.||||.|.|.|..|||.|..|.|||..|||..||...|||||.|...|||
BPUM_1573___y 48 GTCATATCAAACAATGAAGCAGCCGGCTGCTGTTACATATATTGAATCAA 97
BSNT_02710___ 101 TGAAAAAAGATACGGTGA--------CTGTCACGGCGTCAAAAGACCAAT 142
|||||.|..|| |.||| |||| .||||||||....|
BPUM_1573___y 98 TGAAAGAGCAT--GCTGAGGTTGCATCTGT------TTCAAAAGATATTT 139
BSNT_02710___ 143 TATATGAAGA-ATTGCTTCAAAAAG-CGCCGGAGTACGAAGTTAAGCCCC 190
|||||.|||| ||||..|| .||| |..|.||.||.|||||.|||.|.|
BPUM_1573___y 140 TATATCAAGAGATTGAATC--GAAGTCTTCTGACTATGAAGTGAAGGCGC 187
BSNT_02710___ 191 AGAATGC-AAGAATTGATAAAGTGTGGAAAAGCATTCCAGG-CTACAATG 238
|.||||| ||| |||||||||||||||||||..||.||.|| ||| ||||
BPUM_1573___y 188 AAAATGCTAAG-ATTGATAAAGTGTGGAAAAAGATGCCTGGTCTA-AATG 235
BSNT_02710___ 239 GATTAAAGGTCAATATTGAACAATCATATAAAAAAATGAAAAAGCAT-GG 287
||...|.|||||||||.||....||.|||.||||||||||||||||| ||
BPUM_1573___y 236 GACAGACGGTCAATATCGATGCCTCTTATGAAAAAATGAAAAAGCATGGG 285
BSNT_02710___ 288 TGAGTTTCGGGA--AAAAGAT--TTGGTGTACAGTCAAGTAAAACCAAGT 333
|.|.|| || |||||.| || ||.|.||.|.||..||||||...|
BPUM_1573___y 286 TCATTT----GATGAAAAGCTGCTT-GTTTTCAATGAAACAAAACCTTCT 330
BSNT_02710___ 334 GTTCAT---CTTGAGTCACTTCAGCCTGAGCCTATTTATAAAGGAAATCC 380
.||||| |.||| ||||....|||||||||||||.||.|||.||||
BPUM_1573___y 331 ATTCATTTACATGA---ACTTGGTGCTGAGCCTATTTACAAGGGACATCC 377
BSNT_02710___ 381 TGACAAACCGATGGTGGCTTTTTTAATCAATGTGGCATGGGGAAATGAGT 430
.||||||...|||...|||||..|.||.||.|||||.|||||..|.|||.
BPUM_1573___y 378 AGACAAAAAAATGAATGCTTTCCTCATTAACGTGGCTTGGGGTGACGAGC 427
BSNT_02710___ 431 ATTTGGAA--AAAATGCTCCCTATT-------CTGCAAAAGCACCAGGTT 471
|||| || ||.||| || |||.|||||||.||.||.
BPUM_1573___y 428 ATTT--AATCAAGATG-------TTAAAGACACTGGAAAAGCATCAAGTG 468
BSNT_02710___ 472 AAAGCTACGTTCTTTTTAGAAGGCAATTGGGTGAGAAACAATGAAAAG-- 519
||.||.||.||.||.|||||.|||||.|||||||.| |||||
BPUM_1573___y 469 AAGGCGACCTTTTTCTTAGAGGGCAAATGGGTGAAA-------AAAAGCA 511
BSNT_02710___ 520 -----CTCGCTAAGAAGATTGCAAAAGACGGACATGAAATCGGAAATCAT 564
||.|||||.|||||.|....|||.||.||||||||.|||||.|||
BPUM_1573___y 512 CGGATCTTGCTAAAAAGATCGTGGCAGATGGTCATGAAATTGGAAACCAT 561
BSNT_02710___ 565 TCATACAATCATCCGGATATGAGCAAACTGACTACAGGA--AGAATTTCC 612
|||||||||||.|||||||||.|||.||||||.|.||.| ||.||| .
BPUM_1573___y 562 TCATACAATCACCCGGATATGCGCACACTGACAAGAGAACGAGCATT--A 609
BSNT_02710___ 613 GAGCAGCTCGACAAGACTAATGAACAAATAGAACAAACGATCGGCGTTAA 662
||||||.|...|||.||.|||...|||||.|||.||.|..|.||....||
BPUM_1573___y 610 GAGCAGATTACCAAAACGAATCGTCAAATTGAAGAATCCCTTGGAAAAAA 659
BSNT_02710___ 663 GCCAAAGTGGTTCGCTCCGCCAAGCGGAAGTTTCAGAAAAGCGGTTATCG 712
.||.|||||||||||.||.||||||||.|||||.|.|.||| ..
BPUM_1573___y 660 ACCGAAGTGGTTCGCCCCTCCAAGCGGTAGTTTTAAAGAAG-------AA 702
BSNT_02710___ 713 ACATTGCAGC--------AGAGAAACAGATGGGAACAGTCATGTGGACAG 754
|||.||.||| |.||||..| ||||.|||..|.||||||||.|
BPUM_1573___y 703 ACAGTGAAGCTAGCCGCAAAAGAAGGA-ATGGAAACCATTATGTGGACGG 751
BSNT_02710___ 755 TTGATACAATCGATTGGCAAAAGCCGGCTCCGTCTGTACTTCAGACGAGA 804
|.||.||.||.||.||||||||.|||.|.||.....||.|.||.|...|.
BPUM_1573___y 752 TAGACACCATTGACTGGCAAAAACCGTCACCAAACATATTACAAAAACGG 801
BSNT_02710___ 805 GTGTTAAGCAAGATACATAATGGTGCCATGATTTTAATGCATCCGACTGA 854
||..||.|.||.||.||.|||||.||.|||||.|||||||||||.||.||
BPUM_1573___y 802 GTACTAGGGAAAATTCACAATGGGGCGATGATATTAATGCATCCAACAGA 851
BSNT_02710___ 855 CCCTACGGCGGAAAGTCTTGAAGCGCTGATTACACAGATAAAAGACAAAG 904
..|.||||||.||||||||||.||.||.||.||.||.||.||.||.|.||
BPUM_1573___y 852 TTCGACGGCGAAAAGTCTTGACGCACTTATCACTCAAATCAAGGAAAGAG 901
BSNT_02710___ 905 GATATGCGCTTGGAACAGTCACTGAACTAATGGATGAAACAAGACTAT-- 952
|.||||...|.|||||.||..||||.||..|...|||||.||||| ||
BPUM_1573___y 902 GTTATGAATTAGGAACGGTTTCTGACCTCCTAAGTGAAAAAAGAC-ATCC 950
BSNT_02710___ 953 -TGAAGTAA 960
|||
BPUM_1573___y 951 GTGA----- 954
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