Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02710 and BPUM_1573

See Amino acid alignment / Visit BSNT_02710 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:21
# Commandline: needle
#    -asequence dna-align/BSNT_02710___ylxY.1.24716.seq
#    -bsequence dna-align/BPUM_1573___ylxY.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02710___ylxY-BPUM_1573___ylxY.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02710___ylxY-BPUM_1573___ylxY.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02710___ylxY
# 2: BPUM_1573___ylxY
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1009
# Identity:     658/1009 (65.2%)
# Similarity:   658/1009 (65.2%)
# Gaps:         104/1009 (10.3%)
# Score: 1969.0
# 
#
#=======================================

BSNT_02710___      1 ATGTACAAAAAATTTGTACCGTTTGCCGTTTTTTTATTTCTTTTTTTTGT     50
                        |..||||||....||||.||....||.|||.|||||.|..|..|.||
BPUM_1573___y      1 ---TTGAAAAAAACGTTACCATTCATTGTGTTTGTATTTTTACTGCTCGT     47

BSNT_02710___     51 CTCATTTGAGATGATGGAAAATCCGCATGCACTTGATTATATAGGGGCAA    100
                     .||||.|.|.|..|||.|..|.|||..|||..||...|||||.|...|||
BPUM_1573___y     48 GTCATATCAAACAATGAAGCAGCCGGCTGCTGTTACATATATTGAATCAA     97

BSNT_02710___    101 TGAAAAAAGATACGGTGA--------CTGTCACGGCGTCAAAAGACCAAT    142
                     |||||.|..||  |.|||        ||||      .||||||||....|
BPUM_1573___y     98 TGAAAGAGCAT--GCTGAGGTTGCATCTGT------TTCAAAAGATATTT    139

BSNT_02710___    143 TATATGAAGA-ATTGCTTCAAAAAG-CGCCGGAGTACGAAGTTAAGCCCC    190
                     |||||.|||| ||||..||  .||| |..|.||.||.|||||.|||.|.|
BPUM_1573___y    140 TATATCAAGAGATTGAATC--GAAGTCTTCTGACTATGAAGTGAAGGCGC    187

BSNT_02710___    191 AGAATGC-AAGAATTGATAAAGTGTGGAAAAGCATTCCAGG-CTACAATG    238
                     |.||||| ||| |||||||||||||||||||..||.||.|| ||| ||||
BPUM_1573___y    188 AAAATGCTAAG-ATTGATAAAGTGTGGAAAAAGATGCCTGGTCTA-AATG    235

BSNT_02710___    239 GATTAAAGGTCAATATTGAACAATCATATAAAAAAATGAAAAAGCAT-GG    287
                     ||...|.|||||||||.||....||.|||.||||||||||||||||| ||
BPUM_1573___y    236 GACAGACGGTCAATATCGATGCCTCTTATGAAAAAATGAAAAAGCATGGG    285

BSNT_02710___    288 TGAGTTTCGGGA--AAAAGAT--TTGGTGTACAGTCAAGTAAAACCAAGT    333
                     |.|.||    ||  |||||.|  || ||.|.||.|.||..||||||...|
BPUM_1573___y    286 TCATTT----GATGAAAAGCTGCTT-GTTTTCAATGAAACAAAACCTTCT    330

BSNT_02710___    334 GTTCAT---CTTGAGTCACTTCAGCCTGAGCCTATTTATAAAGGAAATCC    380
                     .|||||   |.|||   ||||....|||||||||||||.||.|||.||||
BPUM_1573___y    331 ATTCATTTACATGA---ACTTGGTGCTGAGCCTATTTACAAGGGACATCC    377

BSNT_02710___    381 TGACAAACCGATGGTGGCTTTTTTAATCAATGTGGCATGGGGAAATGAGT    430
                     .||||||...|||...|||||..|.||.||.|||||.|||||..|.|||.
BPUM_1573___y    378 AGACAAAAAAATGAATGCTTTCCTCATTAACGTGGCTTGGGGTGACGAGC    427

BSNT_02710___    431 ATTTGGAA--AAAATGCTCCCTATT-------CTGCAAAAGCACCAGGTT    471
                     ||||  ||  ||.|||       ||       |||.|||||||.||.||.
BPUM_1573___y    428 ATTT--AATCAAGATG-------TTAAAGACACTGGAAAAGCATCAAGTG    468

BSNT_02710___    472 AAAGCTACGTTCTTTTTAGAAGGCAATTGGGTGAGAAACAATGAAAAG--    519
                     ||.||.||.||.||.|||||.|||||.|||||||.|       |||||  
BPUM_1573___y    469 AAGGCGACCTTTTTCTTAGAGGGCAAATGGGTGAAA-------AAAAGCA    511

BSNT_02710___    520 -----CTCGCTAAGAAGATTGCAAAAGACGGACATGAAATCGGAAATCAT    564
                          ||.|||||.|||||.|....|||.||.||||||||.|||||.|||
BPUM_1573___y    512 CGGATCTTGCTAAAAAGATCGTGGCAGATGGTCATGAAATTGGAAACCAT    561

BSNT_02710___    565 TCATACAATCATCCGGATATGAGCAAACTGACTACAGGA--AGAATTTCC    612
                     |||||||||||.|||||||||.|||.||||||.|.||.|  ||.|||  .
BPUM_1573___y    562 TCATACAATCACCCGGATATGCGCACACTGACAAGAGAACGAGCATT--A    609

BSNT_02710___    613 GAGCAGCTCGACAAGACTAATGAACAAATAGAACAAACGATCGGCGTTAA    662
                     ||||||.|...|||.||.|||...|||||.|||.||.|..|.||....||
BPUM_1573___y    610 GAGCAGATTACCAAAACGAATCGTCAAATTGAAGAATCCCTTGGAAAAAA    659

BSNT_02710___    663 GCCAAAGTGGTTCGCTCCGCCAAGCGGAAGTTTCAGAAAAGCGGTTATCG    712
                     .||.|||||||||||.||.||||||||.|||||.|.|.|||       ..
BPUM_1573___y    660 ACCGAAGTGGTTCGCCCCTCCAAGCGGTAGTTTTAAAGAAG-------AA    702

BSNT_02710___    713 ACATTGCAGC--------AGAGAAACAGATGGGAACAGTCATGTGGACAG    754
                     |||.||.|||        |.||||..| ||||.|||..|.||||||||.|
BPUM_1573___y    703 ACAGTGAAGCTAGCCGCAAAAGAAGGA-ATGGAAACCATTATGTGGACGG    751

BSNT_02710___    755 TTGATACAATCGATTGGCAAAAGCCGGCTCCGTCTGTACTTCAGACGAGA    804
                     |.||.||.||.||.||||||||.|||.|.||.....||.|.||.|...|.
BPUM_1573___y    752 TAGACACCATTGACTGGCAAAAACCGTCACCAAACATATTACAAAAACGG    801

BSNT_02710___    805 GTGTTAAGCAAGATACATAATGGTGCCATGATTTTAATGCATCCGACTGA    854
                     ||..||.|.||.||.||.|||||.||.|||||.|||||||||||.||.||
BPUM_1573___y    802 GTACTAGGGAAAATTCACAATGGGGCGATGATATTAATGCATCCAACAGA    851

BSNT_02710___    855 CCCTACGGCGGAAAGTCTTGAAGCGCTGATTACACAGATAAAAGACAAAG    904
                     ..|.||||||.||||||||||.||.||.||.||.||.||.||.||.|.||
BPUM_1573___y    852 TTCGACGGCGAAAAGTCTTGACGCACTTATCACTCAAATCAAGGAAAGAG    901

BSNT_02710___    905 GATATGCGCTTGGAACAGTCACTGAACTAATGGATGAAACAAGACTAT--    952
                     |.||||...|.|||||.||..||||.||..|...|||||.||||| ||  
BPUM_1573___y    902 GTTATGAATTAGGAACGGTTTCTGACCTCCTAAGTGAAAAAAGAC-ATCC    950

BSNT_02710___    953 -TGAAGTAA    960
                      |||     
BPUM_1573___y    951 GTGA-----    954


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