Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02708 and BPUM_1570
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:20
# Commandline: needle
# -asequence dna-align/BSNT_02708___ribC.1.24716.seq
# -bsequence dna-align/BPUM_1570___ribC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02708___ribC-BPUM_1570___ribC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02708___ribC-BPUM_1570___ribC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02708___ribC
# 2: BPUM_1570___ribC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1026
# Identity: 685/1026 (66.8%)
# Similarity: 685/1026 (66.8%)
# Gaps: 135/1026 (13.2%)
# Score: 2161.0
#
#
#=======================================
BSNT_02708___ 1 GTGAAGACGATACATATTACACATCCTCAT-CATTTAATAAAAGAGGAGC 49
||||||||.|||||||||.||||.||.||| ||||.|||.||| ||||
BPUM_1570___r 1 GTGAAGACTATACATATTTCACACCCACATACATTGAATCAAA-AGGA-- 47
BSNT_02708___ 50 AGGCAAAA----TCAGTGATGGCGTTAGGATATTTTGACGGCGTTCATCT 95
.|||.| ||.||.|||||.|||||.|||||||||||.|||||.||
BPUM_1570___r 48 --TCAAGACCCGTCTGTTATGGCTTTAGGGTATTTTGACGGTGTTCACCT 95
BSNT_02708___ 96 CGGGCATCAAAAGGTAATCTGCACAGCGAAGCAAATAGC----CGAAGAA 141
|||.||||||||.||||| || .||.||||||.||| | |||||
BPUM_1570___r 96 CGGACATCAAAAAGTAAT-TG----ACGCAGCAAAAAGCATTGC-AAGAA 139
BSNT_02708___ 142 A--AAGGTCTGACATTGGCTGTGATGACCTTTCATCCCCATCCTTCTCAC 189
| ||||.|||.|.||.||.||.||||||||||||||.||.||.||.|||
BPUM_1570___r 140 AAGAAGGGCTGGCTTTAGCGGTCATGACCTTTCATCCGCACCCATCACAC 189
BSNT_02708___ 190 GTGTTGGGCAGAGATAAG-----GAACCTAAGGATCTGATTACGCCTCTT 234
||.|| ||| |.||| |||||.|||||..|.|||||.||.|||
BPUM_1570___r 190 GTTTT--GCA---AAAAGCACGTGAACCCAAGGACTTAATTACACCGCTT 234
BSNT_02708___ 235 GAAGACAAAATAAATCAAATTGAACAATTAGGTACAGAAGTTCTGTAT-- 282
||.||.|||||..||...||.|||||..|.||..|.|| .|.|||||
BPUM_1570___r 235 GAGGATAAAATCGATTTCATCGAACAGCTGGGCGCTGA--CTATGTATAC 282
BSNT_02708___ 283 GTCGTTAAATTTAATGAAGTGTTTGCTTCTCTTTCTCCT-AAGCAGTTTA 331
.|.||..|.||.|.||||...|||||..|..|.|||||| ||| |||||.
BPUM_1570___r 283 ATTGTGCAGTTCAGTGAAAGCTTTGCAGCATTATCTCCTCAAG-AGTTTG 331
BSNT_02708___ 332 TAGACCAGTATAT-TATCGGCCTTAATGTGCAGCACGCAGTGGCAGGCTT 380
|.||.||.|||.| .|| |..||.|||||..||||||||||.||.||.||
BPUM_1570___r 332 TCGATCAATATCTGGAT-GAGCTGAATGTAAAGCACGCAGTAGCCGGTTT 380
BSNT_02708___ 381 TGACTTTACGTACGGCAAATACG-------GCAAGGGAACAATGAAGACC 423
|||.|||||||.|||| || ||| ||.||||||.|.|||
BPUM_1570___r 381 TGATTTTACGTTCGGC-----CGTTTTGGTGCA--GGCACAATGGAAACC 423
BSNT_02708___ 424 ATGCCGGATGATTTAGACGGAAAAG-----CTG--GGTGCACAATGGTAG 466
.| .|||||.| ||||||||| .|| || .|||.||.||..
BPUM_1570___r 424 TT---CGATGAGT---ACGGAAAAGGACGTATGACGG-CCACCATCGTTC 466
BSNT_02708___ 467 AAAAATTAACGGAGCAGGATAAAAAAATCAGTTC----TTCGTATATCCG 512
..||.||..|..|.||.||...||||.||||.|| .|| ||.||
BPUM_1570___r 467 CTAAGTTGTCCAATCAAGACCGAAAAGTCAGCTCAACACTC----ATACG 512
BSNT_02708___ 513 TACTGCGCTTCAAAACGGAGATGTTGAATTGGCGAATGTCTTGCTT---G 559
..||||..|..||||.||.||||||||||..|.||.|| .|||| |
BPUM_1570___r 513 ATCTGCATTGAAAAATGGGGATGTTGAATATGTGAGTG---AGCTTTTAG 559
BSNT_02708___ 560 GACAACCTTATTTTATTAAA-------GGAATTGTCATTCATGGTGATAA 602
||.|||||||| .| ||.||||||||||||||||||||
BPUM_1570___r 560 GAAAACCTTAT-------CAGCTGCGCGGTATTGTCATTCATGGTGATAA 602
BSNT_02708___ 603 AAGAGGGCGGACCATCGGGTTTCCGACAGCGAATGTCGGTTTAAATAACA 652
|.||||.|||||.|||||.||||||||.||.|||||||||| ||.|.
BPUM_1570___r 603 ACGAGGACGGACGATCGGCTTTCCGACTGCCAATGTCGGTT----TATCT 648
BSNT_02708___ 653 GC----TATATCGTTCCGCCCACAGGTGTATATGCCGTAAAAGCGGAAGT 698
|| ||||||.|||||||.|||||.||.|||||.||||.|||.|||||
BPUM_1570___r 649 GCTGAGTATATCATTCCGCCAACAGGGGTTTATGCGGTAAGAGCAGAAGT 698
BSNT_02708___ 699 GAACGGCGAAGTTTACAATGGCGTTTGCAATATTGGCTATAAGCCGACGT 748
|||.|||.||.|.||..|.||.|||||.|||.||||||||||.||.||.|
BPUM_1570___r 699 GAAAGGCAAAATGTATGACGGTGTTTGTAATGTTGGCTATAAACCAACCT 748
BSNT_02708___ 749 TTTATGAAAAGCGCCCTGAGCAGCCTTCCATCGAGGTCAATCTGTTTGAT 798
||||||||||.||||||||.||||||.||||.||.||.|||||.||||.|
BPUM_1570___r 749 TTTATGAAAAACGCCCTGATCAGCCTGCCATTGAAGTAAATCTCTTTGGT 798
BSNT_02708___ 799 TTCGATCAAGAGGTATAT--GGAGCCGCTATAAAAATCGAATGGTACAAA 846
||..|..||||..|.||| |||.||| ||.|||.|..|.||||.|||.
BPUM_1570___r 799 TTTAACGAAGAAATCTATGGGGAACCG--ATTAAATTACAGTGGTTCAAG 846
BSNT_02708___ 847 CGGATTCGGAGCGAGCGGAAATTCAATGGTATCAAAGAATTAACAGAGCA 896
||.|||||.||.||||..|||||.||.||.|||.|.||.|||||.|..||
BPUM_1570___r 847 CGCATTCGCAGTGAGCAAAAATTTAACGGAATCCAGGAGTTAACGGCTCA 896
BSNT_02708___ 897 AAT-----TGAGAAAGATAAGCAGGAAGCCA-TCCGTTATTTCAGCAATT 940
||| | ||||||..|.|||||.| ||..||.|||||.| ||.
BPUM_1570___r 897 AATCAGTCT-----AGATAAAGAAGAAGCGATTCAATTTTTTCAAC-ATC 940
BSNT_02708___ 941 TGCGGAAATAA--------------- 951
.|||.||..||
BPUM_1570___r 941 AGCGAAAGCAAACAAAAAATTCATAG 966
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