Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02707 and BPUM_1569

See Amino acid alignment / Visit BSNT_02707 in genome browser / Return to Orthologue table 
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:20
# Commandline: needle
#    -asequence dna-align/BSNT_02707___truB.1.24716.seq
#    -bsequence dna-align/BPUM_1569___truB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02707___truB-BPUM_1569___truB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02707___truB-BPUM_1569___truB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02707___truB
# 2: BPUM_1569___truB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 989
# Identity:     645/989 (65.2%)
# Similarity:   645/989 (65.2%)
# Gaps:         118/989 (11.9%)
# Score: 1978.5
# 
#
#=======================================

BSNT_02707___      1 ATGGTTAACGGAGTTCTCCTTTTACATAAACCTGTTGGCATGACATCGCA     50
                     |||.|.||.||.|||||..|.|||||||||......||.|||||.||.||
BPUM_1569___t      1 ATGATAAATGGTGTTCTTTTATTACATAAAGAAAGAGGGATGACCTCTCA     50

BSNT_02707___     51 CGACTGTGTCATGAAGATCCGAAAGCTGTTAAAAACAAAAAAAGTAGGAC    100
                     |||||||||..|.||..|..|||||.|.||..|.|||||||||||.||||
BPUM_1569___t     51 CGACTGTGTGTTCAAAGTGAGAAAGATATTGCATACAAAAAAAGTGGGAC    100

BSNT_02707___    101 ATACAGGAACGCTCGATCCGGAAGTGTCAGGCGTGCTTCCGATTTGTGTA    150
                     |||||||.||.||||||||.||.||.|||||.||.||.||.||||||.|.
BPUM_1569___t    101 ATACAGGTACACTCGATCCCGAGGTATCAGGTGTTCTGCCTATTTGTATC    150

BSNT_02707___    151 GGAAGAGCGACAAAAATAGTCGAATACTTAACTGAAAAATCTAAAACGTA    200
                     ||.|||||.||.||.||.||||||||.|||||.||.|||||.||||||||
BPUM_1569___t    151 GGGAGAGCAACGAAGATTGTCGAATATTTAACAGATAAATCGAAAACGTA    200

BSNT_02707___    201 TGATGCAGAAATAACGCTTGGCTTTTCAACCACTACAGAGGATCAAACCG    250
                     ||||||||||||.|||.||||.|||||.||.||.|||||.||.|||||.|
BPUM_1569___t    201 TGATGCAGAAATCACGATTGGTTTTTCTACAACAACAGAAGACCAAACAG    250

BSNT_02707___    251 GAGAAACGGT---GGAAATAAAG-----------CCTGTCA-ATCACGAC    285
                     |.||||..||   .||||.||||           |.|.||| |..|.||.
BPUM_1569___t    251 GTGAAATCGTAGAAGAAAAAAAGGTGCAAAACCCCATCTCAGAAGAAGAA    300

BSNT_02707___    286 ATTGATAAAGCGGATGTAGAAAAGGTTTTAAACAGTTTAAAGGGGAAACA    335
                     ||||||...|||              ||.|||||||||.||||   |||.
BPUM_1569___t    301 ATTGATGCTGCG--------------TTGAAACAGTTTCAAGG---AACC    333

BSNT_02707___    336 A--GAACAAATTCCGCCCATGTATTCCGCTGTAAAAGTAAACGGCAAAAA    383
                     |  |||||||||||.||.||||.|||.||.||.|||.|...|||.|||||
BPUM_1569___t    334 ATTGAACAAATTCCACCTATGTTTTCGGCAGTGAAAATTGGCGGAAAAAA    383

BSNT_02707___    384 ATTATACGAATACGCAAGAGCAGGGATTGAAGTAGAACGTCCGAAACGT-    432
                     |.|.||.|||||.|||||||.|||.||||||.|.||.||.||||..||| 
BPUM_1569___t    384 ACTCTATGAATATGCAAGAGAAGGCATTGAAATTGAGCGACCGAGCCGTG    433

BSNT_02707___    433 --AT---GA-TAACCATTGAAGACATTGCCCTGACGACA-----------    465
                       ||   || |.|||.|       ||.|..|.|||.|||           
BPUM_1569___t    434 AAATTTCGATTCACCGT-------ATCGAGCGGACAACACCTGCTTTATT    476

BSNT_02707___    466 --GAGATTAAAC---ATCATGGAGAAACCGCAAGCTT--CCGGTTTACAG    508
                       .|.||..|||   |||||..|||          ||  |||.||||   
BPUM_1569___t    477 TGAAAATGGAACAGTATCATTTAGA----------TTTACCGTTTTA---    513

BSNT_02707___    509 TGACTTGCTCCAAAGGGACCTATGTAAGGACGCTGGCGGTCATG--ATCG    556
                          ||.||.|||||.||.|||||.||.||..|.|||||  ||  ||.|
BPUM_1569___t    514 -----TGTTCAAAAGGAACGTATGTCAGAACCTTAGCGGT--TGATATTG    556

BSNT_02707___    557 GAGAAAAGCTCGGATATCCGGCTCATATGTCTCATTTAATCCGTACGGCA    606
                     ||.|.||.||.||.|.|||.|||||||||||.||..|.||.||.||.|..
BPUM_1569___t    557 GAAAGAAACTAGGTTTTCCAGCTCATATGTCACACCTCATTCGCACTGGT    606

BSNT_02707___    607 TCCGGAGATTTTTCTCTCGACGAATGCTTTACTTTTGATGAGCT-CG---    652
                     ||.||.||||||.|.||.||.||.|||.|.||..|||||||||| ||   
BPUM_1569___t    607 TCAGGTGATTTTACACTAGATGAGTGCATCACCCTTGATGAGCTGCGAGA    656

BSNT_02707___    653 ---AAGCACAGGCCCAATCCGGAACCGTGGAAGAGCATACAGTTCCTATT    699
                        ||||..||    ||   ||.||.||.||.|||||....||.||.||.
BPUM_1569___t    657 TATAAGCGAAG----AA---GGCACAGTAGATGAGCACCTTGTCCCGATC    699

BSNT_02707___    700 GAACGTGCGCTCAATCATTTGCCGAAATGGATCATAAGTGATACATTAGC    749
                     ||.|||||||||||||||||||||||||||...||||.||||||||||||
BPUM_1569___t    700 GAGCGTGCGCTCAATCATTTGCCGAAATGGGAGATAAATGATACATTAGC    749

BSNT_02707___    750 TAAG-AAAGTAGAAAATGGGGCTTTGCTTGAGACGCCCGAGCAGTTTTCT    798
                      ||| |||||.|||||.||.||..|.||....|.|||.||..|.||..||
BPUM_1569___t    750 -AAGTAAAGTGGAAAACGGTGCAGTCCTGCCAATGCCTGATGAATTCGCT    798

BSNT_02707___    799 GAAATGACA-AGTGAAGACCGTATCGCCGTCTTTACTGAATCTGGAACC-    846
                     .|..|..|| || |||||.|||.||||.||||||.||...||.||  || 
BPUM_1569___t    799 CATTTCGCAGAG-GAAGATCGTGTCGCTGTCTTTGCTCCTTCAGG--CCG    845

BSNT_02707___    847 -TGTTTGGCGATCTATTTCCCTCATCCTGCAAAAAAAGGGCTGTTAAAGC    895
                      |||.|||||||.|||.|....||.||..|.|||.|.....||.|.||||
BPUM_1569___t    846 GTGTATGGCGATATATATGAAGCACCCGACCAAACAGAATTTGATGAAGC    895

BSNT_02707___    896 CGGCAAAAGTATTGATGCAA--AAAAGCGAAC--AATAG    930
                     ||||.||..|.|| ||...|  |.||||.|.|  ||   
BPUM_1569___t    896 CGGCGAAGATCTT-ATCTCAGGACAAGCAATCTTAA---    930


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