Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02701 and BPUM_1564

See Amino acid alignment / Visit BSNT_02701 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:20
# Commandline: needle
#    -asequence dna-align/BSNT_02701___ylxR.1.24716.seq
#    -bsequence dna-align/BPUM_1564___ylxR.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02701___ylxR-BPUM_1564___ylxR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02701___ylxR-BPUM_1564___ylxR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02701___ylxR
# 2: BPUM_1564___ylxR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 304
# Identity:     212/304 (69.7%)
# Similarity:   212/304 (69.7%)
# Gaps:          32/304 (10.5%)
# Score: 759.0
# 
#
#=======================================

BSNT_02701___      1 ---------GTGAATAAACACAAAAAGATCCC-ATTACGCAAATGTGTAG     40
                              |||||||..|..|||||.||||| .||| |.||||||||.|
BPUM_1564___y      1 ATGTATAAGGTGAATAGCCGAAAAAAAATCCCGCTTA-GAAAATGTGTCG     49

BSNT_02701___     41 TGACTGGTGAAATGAAGCCTAAAAAGGAACTGATCCGAGTTGTACGGTCG     90
                     ||||.||.||||||||.||.||.||.|||||||||||.|||||.||.||.
BPUM_1564___y     50 TGACGGGAGAAATGAAACCAAAGAAAGAACTGATCCGTGTTGTTCGTTCT     99

BSNT_02701___     91 AAAGAAGGCGAAATCTCAGTAGACCCGACCGGAAAAAAGAATGGGCGGGG    140
                     ||||||||.|||.|.||.||.|||.|.||||||||||||||.||.||.||
BPUM_1564___y    100 AAAGAAGGTGAAGTGTCTGTTGACGCAACCGGAAAAAAGAACGGACGCGG    149

BSNT_02701___    141 TGCTTA--TTTAACGCTGGATAAAGAGTGCA-TCTTAGCAGCAAAAAAGA    187
                     .|||||  |||  |.||.||||||||...|| |||| ||.|||||.||.|
BPUM_1564___y    150 GGCTTACCTTT--CTCTCGATAAAGAAACCATTCTT-GCGGCAAAGAACA    196

BSNT_02701___    188 AAAACACTTTGCAAAATCAATTTCAATCACAAATCGATGACCAGATTTTC    237
                     ||..||.|||.||..|.||||||||..||||.||.||.||.||.||.||.
BPUM_1564___y    197 AACGCAGTTTACAGCAGCAATTTCAGACACAGATTGACGAACACATATTT    246

BSNT_02701___    238 GATGAATTGCTGGAACTGGCGGAAAAGGTGAAAAAATAA-----------    276
                     ||.|||||.||.|||||.||.|||||||||||||||..|           
BPUM_1564___y    247 GAAGAATTACTAGAACTAGCTGAAAAGGTGAAAAAACCAAATGAATCAAT    296

BSNT_02701___    276 ----    276
                         
BPUM_1564___y    297 CTGA    300


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