Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02698 and BPUM_1562
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:19
# Commandline: needle
# -asequence dna-align/BSNT_02698___ylxS.1.24716.seq
# -bsequence dna-align/BPUM_1562___ylxS.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02698___ylxS-BPUM_1562___ylxS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02698___ylxS-BPUM_1562___ylxS.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02698___ylxS
# 2: BPUM_1562___ylxS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 485
# Identity: 387/485 (79.8%)
# Similarity: 387/485 (79.8%)
# Gaps: 25/485 ( 5.2%)
# Score: 1545.0
#
#
#=======================================
BSNT_02698___ 1 ATGAGCAAAAAAGTGACT-GACACCGTTCAA--GAAATGGCTCAGCCAAT 47
|||||||||||||| |.| ||...||| || |||||||..||||||||
BPUM_1562___y 1 ATGAGCAAAAAAGT-AGTGGATGTCGT--AAGCGAAATGGTGCAGCCAAT 47
BSNT_02698___ 48 CGTAGACAGCCTTCAGCTGGAACTCGTTGACATTGAATTTGTCAAAGAGG 97
..||||..||.|.|||||.|||||||||||..||||||||||||||||||
BPUM_1562___y 48 TTTAGATGGCTTACAGCTTGAACTCGTTGATGTTGAATTTGTCAAAGAGG 97
BSNT_02698___ 98 GCCAAAGCTGGTTCCTTCGCGTGTTTATTGATTCCGATGACGGTGTGGAT 147
|.||||.||||||||||||||||||||||||.||.|||.|.||.||.|||
BPUM_1562___y 98 GTCAAAACTGGTTCCTTCGCGTGTTTATTGACTCTGATAAAGGCGTCGAT 147
BSNT_02698___ 148 ATTGAGGAATGTGCCAAAGTAAGCGAAGCTTTAAGCGAAAAGCTTGATGA 197
||.||.||||||||||||||.||||||||.||.|||||||||||||||||
BPUM_1562___y 148 ATCGAAGAATGTGCCAAAGTGAGCGAAGCCTTGAGCGAAAAGCTTGATGA 197
BSNT_02698___ 198 GGCAGACCCAATCAGCCAAAATTACTTTCTTGAAGTCTCATCTCCAGGAG 247
||||||.||.||.||||||||.||||||||||||||.||.|||||.||||
BPUM_1562___y 198 GGCAGATCCGATTAGCCAAAACTACTTTCTTGAAGTGTCCTCTCCTGGAG 247
BSNT_02698___ 248 CTGAGCGTCCGCTAAAGAAAAAAGCCGATTTCGAAAAATCACTAGGAAAA 297
|.|||||.||..|||||||||||||.|||||.||||||.||||.||||||
BPUM_1562___y 248 CGGAGCGCCCATTAAAGAAAAAAGCTGATTTTGAAAAAGCACTTGGAAAA 297
BSNT_02698___ 298 AACGTATACATTAAGACGTATGAGCCTATTGACGGCGTAAAAGTGTTTGA 347
||.||.|.|||.||.||.|||||.||.|||||.||.|.|||||..|||||
BPUM_1562___y 298 AATGTTTTCATGAAAACATATGAACCAATTGATGGTGAAAAAGCATTTGA 347
BSNT_02698___ 348 AGGTGAACTGGCTGAA--TTTGATGGACA------AACAGTGACAGTTGA 389
||||||.||..| || ||||||||..| |||||||||||
BPUM_1562___y 348 AGGTGAGCTTAC--AAGCTTTGATGGTGAGATTGCAACAGTGACAG---- 391
BSNT_02698___ 390 GATCACGATCAAAACAAGAAAGAAACGGATCAATATTCCGTATGAAAAGA 439
|.|.||||||.||||||||||||..||||||||||||.||.|||||.|
BPUM_1562___y 392 --TGAAGATCAAGACAAGAAAGAAAGAGATCAATATTCCATACGAAAAAA 439
BSNT_02698___ 440 TAGCTAATGCAAGATTAGCTGTTACATTC---TAA 471
|||||||.|||||||||||.|||.|.||| |||
BPUM_1562___y 440 TAGCTAACGCAAGATTAGCAGTTTCGTTCAATTAA 474
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