Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02691 and BPUM_1553

See Amino acid alignment / Visit BSNT_02691 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:18
# Commandline: needle
#    -asequence dna-align/BSNT_02691___cdsA.1.24716.seq
#    -bsequence dna-align/BPUM_1553___cdsA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02691___cdsA-BPUM_1553___cdsA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02691___cdsA-BPUM_1553___cdsA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02691___cdsA
# 2: BPUM_1553___cdsA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 859
# Identity:     476/859 (55.4%)
# Similarity:   476/859 (55.4%)
# Gaps:         218/859 (25.4%)
# Score: 1383.5
# 
#
#=======================================

BSNT_02691___      1 ATGAAACAAAGAATTTTGACAGGTGTTCTGGCAGCAATTGTATTTTTATT     50
                                                                       
BPUM_1553___c      0 --------------------------------------------------      0

BSNT_02691___     51 TTTGGTTATTGTCGGGAAATTGCCGTTCACCATATTAATTTATGCTATGG    100
                                                                   ||||
BPUM_1553___c      1 ----------------------------------------------ATGG      4

BSNT_02691___    101 GCAGTGTGGCGCTTTTTGAACTTTTACGGATGAAAAAGCTGAAGCTGGTT    150
                     |.||.||.||.||.|||||.|||.||.|.|||||||||.|  |.|...||
BPUM_1553___c      5 GAAGCGTCGCTCTCTTTGAGCTTCTAAGAATGAAAAAGAT--ATCGATTT     52

BSNT_02691___    151 TCACTGCCGGGTTTGATCGGTCTT------TTATTATTG---TGGATGTT    191
                     |||       ||.|...||||.||      |||.|||||   |||.|.||
BPUM_1553___c     53 TCA-------GTATTCCCGGTATTGTCAGCTTAATATTGCTTTGGCTTTT     95

BSNT_02691___    192 ------------------CTTATTGCCAAGCCAGTATTCGTTTTTTGAAG    223
                                       |||.||.||.|.|  |||              
BPUM_1553___c     96 AATGGGCGGAGAGAACAGCTTCTTCCCGAAC--GTA--------------    129

BSNT_02691___    224 CGGACGGAATTTCCAAAATGGAAATCGCTTTATTTGCGG---TACTGCTA    270
                       ||||.|   ||.||||||.|.||.||||||||.||.|   ||.|.||.
BPUM_1553___c    130 --GACGCA---TCAAAAATGCAGATTGCTTTATTCGCAGTCTTAATTCTT    174

BSNT_02691___    271 TTGCTGACTTACACAGTGTTGGTCAAGAACACCTTTACTTTTGATGAAGT    320
                     |   |.|||||.|||||||||..|||.|||.|.||.||.||.|||||.||
BPUM_1553___c    175 T---TAACTTATACAGTGTTGAGCAAAAACTCTTTCACATTCGATGAGGT    221

BSNT_02691___    321 CGGGTTTATTACGCTT-GCAGCAATTTACATCGGAATGTGTTTTCATTAT    369
                     .|..|||.|.| .||| ||..||.|.||.||.||..|..||||..|||||
BPUM_1553___c    222 TGCTTTTGTGA-TCTTAGCGACATTATATATTGGCGTCAGTTTCTATTAT    270

BSNT_02691___    370 TTTATCGAAATCAGAAATCTTGACCAATACGGATTAACAT-----ACATT    414
                     ||||||.||||.|||      |.|..|||.||     |||     ..||.
BPUM_1553___c    271 TTTATCCAAATTAGA------GGCTTATATGG-----CATGAGTGCGATC    309

BSNT_02691___    415 TTTTATGC----GTGTGTTGTCATTTGGTCCACCGATTCCGGTGCCTATT    460
                     ||.|..||    |||    .|.|||||||||||.||.||.||||||||||
BPUM_1553___c    310 TTCTTCGCAGCAGTG----ATTATTTGGTCCACTGACTCAGGTGCCTATT    355

BSNT_02691___    461 TTGTCGGTAAATCGCTTGGGAAGCGGAAACTGTGGCCTGAAATCAGTCCG    510
                     |..|.||.||||||.|.|||||.||.||.||.|||||.||.||.||.||.
BPUM_1553___c    356 TCATTGGGAAATCGATGGGGAAACGAAAGCTCTGGCCAGAGATTAGCCCA    405

BSNT_02691___    511 AATAAAACAGTGGAAGGGTTTGCAGGCGGAATTGTCATCGCACTTGTATT    560
                     ||.||||||||.|||||.|||...||.|||||.||||..||..|.||.||
BPUM_1553___c    406 AACAAAACAGTAGAAGGATTTATCGGTGGAATCGTCACAGCGGTCGTGTT    455

BSNT_02691___    561 GGCGACGATT----TTTCAGCTTGTTGCACAACTTCCGATCCCGTATATC    606
                     |.|    |||    ||||||...|||.||..|.||   .|.||    |||
BPUM_1553___c    456 GTC----ATTTGTGTTTCAGGCGGTTACAGGATTT---TTGCC----ATC    494

BSNT_02691___    607 -TATCTGC------TGTTGATCACGCTGTTTTTG-TCTGT---TTTCGGA    645
                      |||||||      ||||.||.||||   ||||| ||.||   ||| ||.
BPUM_1553___c    495 ATATCTGCTTGTTATGTTTATTACGC---TTTTGCTCAGTATCTTT-GGG    540

BSNT_02691___    646 CAACTTGGAGATTTAGTGGAATCCGCCTTGAAAAGACATTACGATGTAAA    695
                     ||.|||||.||..|.||||||||.||.||.|||.|.||||||||.||.||
BPUM_1553___c    541 CAGCTTGGCGACCTTGTGGAATCTGCTTTAAAACGTCATTACGACGTGAA    590

BSNT_02691___    696 GGATTCTGGGAAAATTCTTCCCGGGCATGGCGGTATATTAGACCGTTTTG    745
                     .|||||.||||.|||.||.||.||.|||||||||||.||.|||.|.||||
BPUM_1553___c    591 AGATTCAGGGACAATCCTCCCTGGACATGGCGGTATTTTGGACAGGTTTG    640

BSNT_02691___    746 ACAGTTTCTTGTTTGTCATGCCTTTCTTGTACTTTCTGCTTGC-CCTTTT    794
                     |.||.||.||.||.||..||||.||.||.||.||.|||||.|| .|.|||
BPUM_1553___c    641 ATAGCTTTTTATTCGTTCTGCCGTTTTTATATTTACTGCTCGCAACGTTT    690

BSNT_02691___    795 TTCA--TAA    801
                     ..||  |||
BPUM_1553___c    691 GCCAGCTAA    699


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_02691 and BPUM_1553

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
