Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02682 and BPUM_1545

See Amino acid alignment / Visit BSNT_02682 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:17
# Commandline: needle
#    -asequence dna-align/BSNT_02682___cheD.1.24716.seq
#    -bsequence dna-align/BPUM_1545___cheD.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02682___cheD-BPUM_1545___cheD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02682___cheD-BPUM_1545___cheD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02682___cheD
# 2: BPUM_1545___cheD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 538
# Identity:     352/538 (65.4%)
# Similarity:   352/538 (65.4%)
# Gaps:          74/538 (13.8%)
# Score: 1085.0
# 
#
#=======================================

BSNT_02682___      1 ATGA--GTACA-ACTGAGGCTGTTGTTATAAAGGTTGGGATTGCTGACGT     47
                     ||||  ||.|| |.|..|||.||||   ||||||||||.||.||.||.||
BPUM_1545___c      1 ATGAACGTTCAGATTCCGGCAGTTG---TAAAGGTTGGTATAGCGGATGT     47

BSNT_02682___     48 GAAGATCGCCCGCTT--------CCCGGATACCATCCGGACCTCTGGTTT     89
                             .|.||||        .|||||...|||.|||||.||.||..|
BPUM_1545___c     48 --------TCAGCTTGTGAAAACACCGGACCGCATTCGGACATCCGGACT     89

BSNT_02682___     90 GGGCTCATGTGTGGGGCTGGTGCTTTATGATAAAGAAAAGCAAAC-GGCG    138
                     .||.||.|||||.||.||.||.||.|.||||.||||||| .|||| |||.
BPUM_1545___c     90 TGGTTCTTGTGTAGGACTTGTTCTGTTTGATCAAGAAAA-AAAACTGGCA    138

BSNT_02682___    139 GGTCTTGTTCATGTCATGCTTCCGGATTCGACGTTATC-----GAAAA--    181
                     |||||||||||||||||||||||.||.||      |||     .||||  
BPUM_1545___c    139 GGTCTTGTTCATGTCATGCTTCCAGACTC------ATCCCTTGCAAAAGG    182

BSNT_02682___    182 --CTGCCGAGCTCAACCGGGCTAAGTACGCTGACACCGCCGTACAGACCA    229
                       |.|..|||   |||..||||||.||.||.||.||.|..||..||...|
BPUM_1545___c    183 GGCAGTGGAG---AACTTGGCTAAATATGCAGATACAGGTGTCAAGCATA    229

BSNT_02682___    230 CGATTGATATGCTGATAGAAGCGGGATGC-CGGAAATTTGCATTAAAAGC    278
                     |.||||||.|.||..|..|||..||| || ||.|||..|||..||||.||
BPUM_1545___c    230 CAATTGATCTTCTCCTTAAAGAAGGA-GCGCGCAAACATGCGCTAAAGGC    278

BSNT_02682___    279 AAAGCTGGCCGGCGGATCAGAGATGTTTAAATTTAAATCGACAAATGATT    328
                     |||.||.||.||.||..||||.||||||||||||||.||.||.||||||.
BPUM_1545___c    279 AAAACTTGCTGGTGGCGCAGAAATGTTTAAATTTAAGTCAACCAATGATC    328

BSNT_02682___    329 TGATGAAGATCGGACCGAGAAATGTATTAGCGATAAAAGAACAGCTGTCT    378
                     |.||||..||.|||||.||||||||||.|||..|.||||||||.||||||
BPUM_1545___c    329 TCATGAGAATTGGACCTAGAAATGTATCAGCTGTTAAAGAACATCTGTCT    378

BSNT_02682___    379 TTATTTAATATTCCTATTATTAGTGAAGATACGGGC-GGCTCAAGCGGCC    427
                     .|.|.|...||.||.||.||||||||.||||||||| ||..||| .||.|
BPUM_1545___c    379 CTTTATCGCATCCCGATCATTAGTGAGGATACGGGCGGGAACAA-TGGTC    427

BSNT_02682___    428 GGACGATAGAATTTGAACCGAAGTCCT---------GCATGCTGCATATT    468
                     |.|||||.||||||||.|||     ||         ||.||    |.||.
BPUM_1545___c    428 GTACGATTGAATTTGATCCG-----CTTACGACAGAGCTTG----AGATC    468

BSNT_02682___    469 CGAACTGTTAAACAAGG-----TGAAAAAACGATTTAA    501
                     ||.|||||.||.|||||     ||||     |||.|||
BPUM_1545___c    469 CGCACTGTGAAGCAAGGCATTATGAA-----GATATAA    501


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