Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02681 and BPUM_1544
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:17
# Commandline: needle
# -asequence dna-align/BSNT_02681.1.24716.seq
# -bsequence dna-align/BPUM_1544___cheC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02681-BPUM_1544___cheC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02681-BPUM_1544___cheC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02681
# 2: BPUM_1544___cheC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 642
# Identity: 214/642 (33.3%)
# Similarity: 214/642 (33.3%)
# Gaps: 357/642 (55.6%)
# Score: 697.5
#
#
#=======================================
BSNT_02681 0 -------------------------------------------------- 0
BPUM_1544___c 1 ATGAGCATTTTCAATGAAATAAAAGATGAACAGCTGGATGTATTAAGAGA 50
BSNT_02681 0 -------------------------------------------------- 0
BPUM_1544___c 51 GGTTGGGAATATTGGAGCAGGCCACGCCGCGTCTGCTCTTGCCAGCCTAT 100
BSNT_02681 0 -------------------------------------------------- 0
BPUM_1544___c 101 TGGATCGCAAAATAGATATGGCTGTTCCATTTGTCAAGGTTCTCTCGTTT 150
BSNT_02681 0 -------------------------------------------------- 0
BPUM_1544___c 151 GAAGAGTTAATGGAATTCTTTGGCGGTGCAGACCTCCCAGTTGCAAGCAT 200
BSNT_02681 0 -------------------------------------------------- 0
BPUM_1544___c 201 TTTCCTGCGAATGGAAGGAGATTTATCTGGCTCAATCTTTTTCATTATGC 250
BSNT_02681 0 -------------------------------------------------- 0
BPUM_1544___c 251 CCTTTGAGCAAGCAGAGCAGTTTGTAAGAGAGCTTGTACGAGATCCGGCA 300
BSNT_02681 1 ------------------------------ATGAGCTCATCCGCTTTGCA 20
|||.|..|.||.||..|.||
BPUM_1544___c 301 TTTGATATTGATACTATTCACGAGCATGTGATGGGGACTTCAGCACTTCA 350
BSNT_02681 21 TGAACTGGGCAATATTTTAGCGGGGTCATATTTAACAGCTTTGGCGGATT 70
.||.|||||.|||||||||||.||.||.||||||.||||..|.||.||||
BPUM_1544___c 351 CGAGCTGGGAAATATTTTAGCAGGCTCTTATTTATCAGCCCTTGCCGATT 400
BSNT_02681 71 TGACGAAACTCCAGCTCTATCCAAGTGTTCCTGAAGT----CTCTTTGGA 116
|.||.|||.|.|||||..|.|||||||||||.||.|| ||| ||
BPUM_1544___c 401 TAACAAAATTGCAGCTTCACCCAAGTGTTCCAGATGTTACGCTC----GA 446
BSNT_02681 117 CATGTTCGGAGCAGTGATCAGCGAAGGGCTGATGGAGCTCAGTC----AG 162
.|||||||||||.||.||.||||||||..|.|||.|..|.|||| ||
BPUM_1544___c 447 TATGTTCGGAGCTGTCATTAGCGAAGGATTAATGCAATTTAGTCCTTTAG 496
BSNT_02681 163 GTTGGAGAACACGCCATTGTTGTCGACACGTCAATTTT---TGACCAAAG 209
|| ||.||.||.|||||..|.||.||.||.||||| |||.||||
BPUM_1544___c 497 GT----GATCAGGCAATTGTGATTGATACATCGATTTTTGATGATCAAA- 541
BSNT_02681 210 CCATCAGCAGGAGCTGAAAGCGCATATGTTTATGCTGCCGGACTATGATT 259
||.||||.||||||||||...||||||||.|..|.||.||||.|||.|
BPUM_1544___c 542 --ATAAGCAAGAGCTGAAAGGAAATATGTTTCTATTACCAGACTTTGAAT 589
BSNT_02681 260 CATTTGAAAAGCTCTTTGTCGCCTTAGGTGCATCAT-TATGA 300
|.||||||||.||.||.|..||.|||||| |.|.| ||.
BPUM_1544___c 590 CGTTTGAAAAACTATTCGAAGCATTAGGT--AACCTGTAA-- 627
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